AMCG00016840


Basic Information

Item Value
gene id AMCG00016840
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32210141 ~ 32216323 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016840
ATCAGGCAGAGCAACACCAGCTGATTTGTACATCGTGTGAGAGCACACTGTGGTCCTCCAAGGCTTTGAGGTTCTCCACTCCGGCCTCTTCTGCAGAGCTGTGCTCATATGTTTTGGGCTCCCACCCTctggctgctgtgctgtgtcgcCTGTCTCCCTGTTTTCCAGTGACTGGTGGATTGGATCTGGGTTGAGTGTGGTGAATGATGGCCAAGACTGTGGTGCTCATTACCGGCTGTTCCTCAGGGATCGGGCTGAGTCTGGCGGTGCGTCTGGCCTCCGACCCCTCTAAAGCCTACAAGGTCTATGCCACGATGCGTAATTTGGCCAAGAAGGAACGTCTTCTGGACTGTGTGAAGGGCTTATATCAGGACACCCTGGACATTCTCCAGCTGGATGTCACTGACCAGCAGTCCATTCTGGATGCCAAGGATAAGATAGAAGAGAAGAGGTTGGACATCTTAGTGTGCAATGCTGGGGTTGGGCTAATGGGTCCCCTGGAAGTCCTGTCCTGCGAGACCATGCAGCAGATTTTGGATGTCAATCTTTTTGGCACTGTTCGTACCATCCAGACATTCCTGCCTGGGATGAAGGCCAGGAGAACGGGCAGGATCCTGGTGACTGGCAGCATTGGTGGTCTGCAGGGTTTGCCCTTCAATGAGGTGTACTGTGCCAGTAAGTTTGCTGTGGAAGGAGTCTGTGAGAGCCTGGCCATCCTGCTACAGCACTTTGACATACACCTCAGCCTGATTGAATGCGGTCCAGTCAACAGCAATTTCGTCAGCAATCTGCAGTGCACGGACCCTGAGAGCTCGTCCATGCAGCACGTTGATGCGCAGACACGGGCTCTGTACCGGACATACCTGAGACACTGCAGCACCATCTTCCAGACCGCAGCGCAGGACAGCGAGGATATCGTGCAGGTCTTCATGGATGCTATTGGGGCTCCCTCCCCAGCTCTGCGCTATTACACAAACACCGCCCTGCAGCCCCTGACTGCTCTCAAACTGCCCTTCCACGACGGGTCCCACTACATCCGCAACATCAACAAGTTTATCTTCCCCACTGACCACACAGATGAGGCTTAAAGAGATTCCCGAGGCACGCAAATTCCGATATACCTGGCCCTGCTCATCCAGTTATATCACAGTCTTATTACATAGAAATGCAGCTATGGTCCAAATGTAATCCGTGTTTCGAAGTTTGGTGTTGTTTGGCGATTCTTCAATTATTGAAGAAATAATGAGAATGACATTAGACTTGTTTGTATAAATGAGCGTTGCAGAGTTTGCTGAACACCTGCTTAGCCTAACCTGAACTGAACTGATTGAACTGAGGCAGATTTCTAAGACAAGGTCcaaagtttgttatttttctctaggctgaatcagtgttcaacaaactcataataatcatattgaTGATAAACAAGTATAGCTGGATGATCAATGTTTTTGACTGAAAGAACCTCTAAATAACGTGGTCCCAAATGAAGGGGATGGCTAATCCTTTAGACTCAAATTGTAGAGCTTATTCCAGGGCACCAAACAGCTGTACCTTCCTATCTGTTTCTGGTCACAGAACATCTCTGCTTAGCTTGAAtggaatttgtgttttatatcttgcgttttcattatattatgtttGGACTATTGCTGGCAGTTGTAGCCCAGTGTATAAGCGTAACTGAACATTCTGTAATATTTGCACTTATTGTGTTCATTAAATTAGAATAAGAAACCCCTTCTGTATCTATATTGACGTCACAAGATCTATGCGAGTCTTTTTACAAGTTGTGAGTGTTCTCCGGTGGTTGAACAGTAATGTTGTCCACACATTTCACAGGCCCAATTCCTCTTAAATTAAGTTATAGACGGGTCAATTTCTAACATTATTTTACCACACAATCTCGCCACAATGTCATATTCTGTTATCTTCcttgtttttgctgtgtttccACAAATGTCCTTATCAATACAAGTCTAATATGTCATTGGCTTGCTTTCTTGTGTTCTAGAGGTTATATCTAATGAATATCAATTGTAAAGTTCCTGTTCTTACAGTACATTAAGTAGTCTATGTGACATCACTCTTTAGAGGCAGCTCAGACCCCACCCCCTGCACTCAACTCACTCTCTCCCGctgtaaaacaaatgcactCAGGGTTAAAACGTGATGAGGGTGtctgtttaaagtttaaactaAATGACAAATTGAATCCTGGCATAGAATCCTACAAACAACAGGACTGGATTGGAACTTTCTCCTTCCAAATCCTTGAACTTAAGAATGtgatacaacaaaaaaatgccaagtattaatatatatgttgttgttttttttattcaaacacTGCACAGTAAG

Function

GO: NA

KEGG:

id description
K00044 HSD17B1; 17beta-estradiol 17-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016840 True 2364 mRNA 0.45 6 32210141 32216323

Neighbor

gene id symbol gene type direction distance location
AMCG00016839 naglu coding upstream 3267 32198948 ~ 32206874 (+)
AMCG00016842 mpp3,LOC100693772 coding upstream 13912 32171872 ~ 32196229 (+)
AMCG00016844 NA coding upstream 70378 32090034 ~ 32139763 (+)
AMCG00016845 NA coding upstream 125569 32074751 ~ 32084572 (+)
AMCG00016836 NA coding upstream 175150 32025172 ~ 32034991 (+)
AMCG00016843 NA coding downstream 9469 32225792 ~ 32245535 (+)
AMCG00016848 tubg1,LOC106601139,LOC107721485 coding downstream 68433 32284756 ~ 32303469 (+)
AMCG00016851 NA coding downstream 177558 32393881 ~ 32434138 (+)
AMCG00016852 NA coding downstream 264341 32480664 ~ 32481807 (+)
AMCG00016853 NA coding downstream 273590 32489913 ~ 32495747 (+)
G16037 NA non-coding upstream 454714 31755042 ~ 31755427 (+)
G15995 NA non-coding upstream 565626 31615220 ~ 31644515 (+)
G15966 NA non-coding upstream 705589 31504079 ~ 31504552 (+)
G15961 NA non-coding upstream 733923 31475307 ~ 31476218 (+)
G15853 NA non-coding upstream 1176820 31033069 ~ 31033321 (+)
G16169 NA non-coding downstream 45388 32261711 ~ 32262672 (+)
G16211 NA non-coding downstream 221931 32438254 ~ 32442585 (+)
G16290 NA non-coding downstream 641228 32857551 ~ 32859016 (+)
G16323 NA non-coding downstream 765456 32981779 ~ 32982330 (+)
G16350 NA non-coding downstream 963382 33179705 ~ 33179940 (+)
AMCG00016830 NA other upstream 459028 31728556 ~ 31751113 (+)
AMCG00016829 NA other upstream 478695 31701669 ~ 31731446 (+)
AMCG00016820 NA other upstream 717037 31473706 ~ 31493104 (+)
G15855 LOC105013322 other upstream 1148996 31059340 ~ 31061145 (+)
G15659 NA other upstream 1973300 30236454 ~ 30236841 (+)
AMCG00016841 NA other downstream 35485 32251808 ~ 32260627 (+)
AMCG00016854 NA other downstream 282733 32499056 ~ 32503372 (+)
G16289 NA other downstream 640038 32856361 ~ 32857440 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other downstream 1103821 33320144 ~ 33333746 (+)
AMCG00016898 NA other downstream 1413689 33630012 ~ 33650080 (+)

Expression


Co-expression Network