AMCG00016841


Basic Information

Item Value
gene id AMCG00016841
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32251808 ~ 32260627 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016841
CCGTGATGCTTCGGACTGTTTTCCAAGATGACGGACCCCAGCGCCTCGCCGGAGGACCCCTGGATTAAAACGGACCCCTCCTTCAGTGACAATGGATTCGACCCCAGTAAGTACCCTGCTTTCCTTGctggtgtctctgtgtctctgccctCCAGACACCTCAGTCTCCATAGCTGGCACCCCTCTGTTCACACTGCACTGTCAGAGACATGGAAAGGTTATGACGATTTGCAGTCCATAGTCCCCACATGCCAGCAACAGACTGACTTCCCCATAGGATCACAGAAAATGAGCAAAGCCACCGTGCTGCAAAAAACGATTGACTACATCCAGTTTCTGcacaaggagaagaagaaacagGAAGAGGAAGTGACCACGCTGAGGAAGGAAGTGATGGCACTGAAGATAATGAAATCGAACTACGAGCAGATCGTGAAGGCCCACCAGAACAACCCCCAGCAGGGCGAGGAGCAGGTGTCCGACCGGGTGAAGTTCAGCATCTTCCAGAGCATCATGGACTCCCTCTTCCAGTCCTTCAACACCACCATCTCCGTCACCAGCTTCCAGGAGCTGTCGGCCTGCGTCTTCAGGTGGATCGAGGAGCACTGCAAGCCCCAGACTCTGCGGGAGTTCGTGGTGGGCATCCTACAGCAGCTGAACAATCGGCTATACTGACACCAAGCAGATCCTGGAGAGATCTGGACTGGCCTCTTTCCCtggccactttttttttttttaatttgtctccaAATCAGGAAACCGCTTTACTTCACCTGGTCAGTTTTCAAGCTTTCTGCTCTCCTGCACTCTACAGAGAAAACGTCCCATTCTCCCAGGCATGGCACTGTGGCTGTTCCTCACACGCCCTCTTCAGATTTCTGGCGATTTTTCAAGGCTGTCTTGGATCTgttgatggttttattttattccaatagCTTGGCTTTTGGAGCGATAGGCTGTGCACAGGGGAAGTATCGCTTCTTTATGAGATTTGTTAATGACTTCAGTATGAGTTTGTAATGACTATGAGTGAGGGCTTTTTtcagagaaggagaaaaaaaaagtaaagtggATCATTTTGTTTCAGCAATCCACAGCTCGCTCAAGCTACTGTACGATTTCTGAGAAATTCCCGACACTGAGACGTGATTGCTCAGCGAGTCAGTGGTTACTGCTAAATTTTggtggtttattatttttcattttttttctttgctgtatttttttttttttttttttacacaacgTGGGTGTCTTGGTGTTTTCAAAcctttttgtattaaaattgttGTCTTAAAACGACAGTTTTCATGCAGCACAGAAGTGTACTTCAGGCGAACTCTGGAGCACCAGACTCATGGCACACACCACCAAATTGTTTCCGGTTgcactttctttctttacattaACGTTTATTTCGACATTGCAATTTTCAAGTGTGCAAGATTTTAAATAGCATACAGGTACACATCTCACTACTACTTCCACTTTTACAACAGTACCACGGAGCATAGGCTTCATGATTCATTCTGTACTGCCCATGCCCAAGATTTACTGTGGGACTCAAAAGAGGACAATCCTATTAGGTCACTGAcaaaaaagaagggaaaaaatccATTGTCCTTCAGACATGCAGATGTCTAGAAAACAGATGAGTTTTAACTGTTGGTAGGCAGTTCATAGTGTCCAATTCTAGAGTACATTGGAAACCAACTTTACCTTTCTTGTAGTCCGTGTGTGctggttcacacacacacacacacctttccTGTCCCTCCTCTGACCTGTGAGGGCTTTAAGGCTAACAAGAATTCCAGCTTTTCAAATGATTGCAAAGCACAATGATGTATTATTCTCTTTCAGGAGAATCAACTATATAAAGCTCAGCAAGCTTTGTGGTAAATATTGCACTGAAGAGCTGGCATTTCAGTGCGTCCTGGTTTATGACCTTGATATAAAAAAAGGACTTCAACCTGAGAAAATTCTagatttattcttattataaagCACATATAGTGCTCCTGCAATTCAGCACAGCTTTTGCAGCCTGGGAAGGTCtaggtttttttaatttgctgctaAAGACATAATCCTACTAGGTGATCATGATCAAATTATTGCCTTATCCCTTTAAAGACCTGCTGTTTTTGGTGAAGATGTACATAACGCAGGCCCTTTATTATGGACACTATGAAATTGTACTTTGGAGCAATAATGAACTATTAGTCTAGAGGAGTTaactcccccactctctcttcAAGCCGTGAAGTGCATTGAAACGGGTCTTGCTAGTTTACCACAACCATGCATGTGTGTCGCTGATGTAGCAGAACTGTAAAATGCCAAGTTAATCTCCAAATTGGAAAGTGTGCAGAATCCAGAGCGGCGATGTGAGTGTGTTACTGAATTCACATTTCAGTATTAATTCAGATCACTGGGGCATTATTGAGAGACCTTTGCAAActgaaaaactgtattttatttttttaattctgtgatcTTAAGGTTGAGGAGGGGGTTACGCGGCGGGCAAGTTGACAGAGATTTCttgttaatgtatacatttaaaaaatacaaaaatcactttGAAGGTTATGTTCATATGCTTATATAATCTACTCAAATGTAGCCTACGTGgtggatgattttttttttgtcagttgaTCTTATTTCTTTGATTGTAatttcttttatatatacacgTTCTCCAAAGtagcaggaaaacaaatgttgcacATGATATTTTAGGAAATTGACAtgtggttaaaaaaattaaaaaaaatcctactATAATGGCATAACGCTCTGTGTATATGTGAAAACGGCtaacagtttacatttaaaGAGGATTCCCATTTTGTATACTGTGTGAAACTCACAGCACAGATCTGTTATCACTGAG
>TU20089
TGCTTCGGACTGTTTTCCAAGATGACGGACCCCAGCGCCTCGCCGGAGGACCCCTGGATTAAAACGGACCCCTCCTTCAGTGACAATGGATTCGACCCCACTTTCTTTGCAGATAGTGGCAGGAAGGGGAGTGTTGTTTCCAGAGCCAACAGCATCGGCTCCACTAGTGCCTCTTCTGTACCGAATACAGATGACGAGGACAGCGACTACAGACNNNNN

Function

GO: NA

KEGG:

id description
K09113 MLX; MAX-like protein X

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016841 True 2902 mRNA 0.42 6 32251808 32260627
TU20089 False 219 lncRNA 0.53 4 32251814 32253229

Neighbor

gene id symbol gene type direction distance location
AMCG00016843 NA coding upstream 6273 32225792 ~ 32245535 (+)
AMCG00016840 NA coding upstream 35485 32210141 ~ 32216323 (+)
AMCG00016839 naglu coding upstream 44934 32198948 ~ 32206874 (+)
AMCG00016842 mpp3,LOC100693772 coding upstream 55579 32171872 ~ 32196229 (+)
AMCG00016844 NA coding upstream 112045 32090034 ~ 32139763 (+)
AMCG00016848 tubg1,LOC106601139,LOC107721485 coding downstream 24129 32284756 ~ 32303469 (+)
AMCG00016851 NA coding downstream 133254 32393881 ~ 32434138 (+)
AMCG00016852 NA coding downstream 220037 32480664 ~ 32481807 (+)
AMCG00016853 NA coding downstream 229286 32489913 ~ 32495747 (+)
AMCG00016855 NA coding downstream 237255 32497882 ~ 32498508 (+)
G16037 NA non-coding upstream 496381 31755042 ~ 31755427 (+)
G15995 NA non-coding upstream 607293 31615220 ~ 31644515 (+)
G15966 NA non-coding upstream 747256 31504079 ~ 31504552 (+)
G15961 NA non-coding upstream 775590 31475307 ~ 31476218 (+)
G15853 NA non-coding upstream 1218487 31033069 ~ 31033321 (+)
G16169 NA non-coding downstream 1084 32261711 ~ 32262672 (+)
G16211 NA non-coding downstream 177627 32438254 ~ 32442585 (+)
G16290 NA non-coding downstream 596924 32857551 ~ 32859016 (+)
G16323 NA non-coding downstream 721152 32981779 ~ 32982330 (+)
G16350 NA non-coding downstream 919078 33179705 ~ 33179940 (+)
AMCG00016830 NA other upstream 500695 31728556 ~ 31751113 (+)
AMCG00016829 NA other upstream 520362 31701669 ~ 31731446 (+)
AMCG00016820 NA other upstream 758704 31473706 ~ 31493104 (+)
G15855 LOC105013322 other upstream 1190663 31059340 ~ 31061145 (+)
G15659 NA other upstream 2014967 30236454 ~ 30236841 (+)
AMCG00016854 NA other downstream 238429 32499056 ~ 32503372 (+)
G16289 NA other downstream 595734 32856361 ~ 32857440 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other downstream 1059517 33320144 ~ 33333746 (+)
AMCG00016898 NA other downstream 1369385 33630012 ~ 33650080 (+)
AMCG00016901 NA other downstream 1407966 33668593 ~ 33674361 (+)

Expression


Co-expression Network