AMCG00016845


Basic Information

Item Value
gene id AMCG00016845
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32074751 ~ 32084572 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016845
AATATAATCCTGATGATATTTCTATGACTGAGCAAACTCTGACTTGTTCTCTTTTTGAATGAAACCATGCCTTCAGCCACCACAGAGACTTTCACTTCTACACCTACTGCTCAACCCCAAACCAGCGCCAACCAGGCTGACGTTACAACCATTACAGGGGCCGATCAGAGCACTGTAAAGCCTTCAGGCCTCACATCGGCCATGACTACAGGCCCCACCACAGAAACGGTGGCATCGGATCAAGGAACATCAACACCAGGTGCCAATGGGATTTCTACAGCCACGAATAACAGTACAGGAACAGATAACACAGCCATTACCATGACCCAGACTTCCCACACAACCCCATCCAGCACAGTTACTCAATCTCTGAGCGCCTCCATTCCTGTCCTGCCTACCAACCAAACTGAGAGCCCAGACACTACCTACACCACTGTCCAGCCCACTTCCCACAGCTCGTCTCACCCAGTTACTCAATCTGTGAGCGCCTCCACTCCTGTCCTGCCTACCAACAGCACTGAGGACCCAGGCACTACCTACACCACTGTCCACTCCACTGCCCCCAGCTCGTCTACCCCAGGTACCAATTGGACTCCATCATCCCCAGATAGCACTATAAGAACTGATTCCACACCACCTAACGGGACCCAGACTTCCCACACATCCTCTCCCAGCACAGTCACCCACCCTATGAACGACTCCACTCCTGTCCGGCCTACCAACCAAACTGCGAGCACAGACGGTAACCAAACTACTGTCCAGTCCACTCCCCCCAGCACTTCTCCCCCAGGAAAAGTTTTCCCCGGTGTTTTGCATTTGACTAAAATGACGTACAAGACAGATATGTCCAATATTTcatctaaattatttaatgagACCGCAACTACAATAACGGAAGTGTTAAGGGAAATACTAGAAAAGCAAGAGGGCTACGTGGAGTCTGTTGTCCAGAAATTAGAGAGCGGTAGTGTTGTAGCAACTGTACAGAACATATACGATATCAGCTCTAACGTGAACGAGAAGACCGTCAATAGTGCAATTCTTAATAAAATCCAGTCCTGCAATGTGATCTGCGGCGTGTTTGATGGCGCAGAATACCAAGTGTGTCCCAGTGGCTACAAGGCGAGTGGAACCAACTGTGTTaaGTGTCCATTTGGCTATTCCGGATTCAACTGTGATGAATCTTACCTGCTGGCCGTCGTGGTGATCTCCTGCGTCCTTGGAGGCCTGCTCGTGATTGTGACCCTGGCTTTCTGCTGTTTCTGCTGCAGGTCTTCCAAGGACTCTTCCTACAGAAGTCCTTACCCTGCAGAGGACTCCCTGACGTGGCCCAAACAGGAAGTTCCCAGGATCCCTCGCGCCAGCACCAACTGGGACCACCCTCAGATGGAGATGTCAGAGAACGGCAGCACGCACGTCCTGGTCAACAAACCGCAGCAAGGAAATGGGGTGGATGAATCTTATGATCTCGATATTGATGACATGAAGACATTCAAAGGCAAGAACCAATCACGCTACTCCTATCTCTGTCATGGGCAGGAAAATCCTTATTTTGTCGCCGATGATGATAAGAAGGCATCGAAATAGTACcgcagaggaagaggaaaaaatgaaaatcaaatcatagggtttattttctgtttttaaatttgtatttcaaaaaaacacccacaaaaGACATTGTGTATTGCTGTCAGgaatgttgttgctgttgtttttttttgtttgttttttactttgatTCCACGATcaattatttctattttgtttcttctgtatatttataagttgaaatgaaatgtttggtCTGCCTACACTGGATAACCCTGACATAGaaacactgaagaaaacatCTTTGCAAATTCCTGGAAGAGAAAAGGGATGAGGAGTTACACATTTGATCCAGTAGATGTCGCTGTTTTCAACATTATGTATGCTTGAAATAATGACTGCAAGTTTAAGTAGTGGCCTTGAGTTTCTTTACATTATTGTTACTATAGTAGCTTGCTGATTAATAACTTTTCTCGTTTGTCATAGTTACTTCCACtgtctatataaacacaatgatTTGTATTGGACCACTCATTTCAGGATGTTTTTAAAGCTACAATTCAGAATGAAATGTATCCACAACTTGAttagattattataattagattaatttatgAGTTTGTGCATTGTACTGGGGTCTGAATAGCAAGAAATGTCAGATCTGAAAAAGGGCTGGAACCCACATTTAAtcctaatatttaaaaaaaacaaaacattaacctATAAGTAGGGAGGAGTGatgattttaatcattttcaggCAGCTATAATGAGATATAGCTCCTATCAATTGAACCCAGAGTGCCTGTTTAAACTTTTTCAACAAATCCAGAAGGAGTAAATAGGAACCTTTCCAAACCCCTTTTGATTAAAATGATATTACTGATGTGccaatatctatattttttgaattacattgaatgtatgtaaatgtcCTTTTACCTGCCTGTAGTCATgtgtacataaacatatatgtttGATATGAAAGATGCAGCAGcggttttaaattgtaaatactgtttcacatgttttatatatttggagGGTCATGCTTTAGAAGAAAAAGACCACCAgccaaacaaaaatgaaaaataaattaatttaaaacatgactCATGACTGACAAGTCGACTAATTTTATACTGGCCTCCTCACAGTGATTTTCCTTCAGGTACACAGCTGCACTTCCTGCACTTCCTTTAGTCGATACTAAAATGATACGTAATACCAAGtagaaacagacacaaacaacgTACCCCTTTTTATCAGggttatatatttatcaatatatttgcacttatgttgtaagttgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016845 True 2864 mRNA 0.42 11 32074751 32084572

Neighbor

gene id symbol gene type direction distance location
AMCG00016836 NA coding upstream 39760 32025172 ~ 32034991 (+)
AMCG00016827 tmem98 coding upstream 297293 31770926 ~ 31777458 (+)
AMCG00016832 NA coding upstream 373125 31700472 ~ 31701626 (+)
AMCG00016828 NA coding upstream 380000 31687002 ~ 31694751 (+)
AMCG00016825 NA coding upstream 437706 31635059 ~ 31637045 (+)
AMCG00016844 NA coding downstream 5462 32090034 ~ 32139763 (+)
AMCG00016842 mpp3,LOC100693772 coding downstream 87300 32171872 ~ 32196229 (+)
AMCG00016839 naglu coding downstream 114376 32198948 ~ 32206874 (+)
AMCG00016840 NA coding downstream 125569 32210141 ~ 32216323 (+)
AMCG00016843 NA coding downstream 141220 32225792 ~ 32245535 (+)
G16037 NA non-coding upstream 319324 31755042 ~ 31755427 (+)
G15995 NA non-coding upstream 430236 31615220 ~ 31644515 (+)
G15966 NA non-coding upstream 570199 31504079 ~ 31504552 (+)
G15961 NA non-coding upstream 598533 31475307 ~ 31476218 (+)
G15853 NA non-coding upstream 1041430 31033069 ~ 31033321 (+)
G16169 NA non-coding downstream 177139 32261711 ~ 32262672 (+)
G16211 NA non-coding downstream 353682 32438254 ~ 32442585 (+)
G16290 NA non-coding downstream 772979 32857551 ~ 32859016 (+)
G16323 NA non-coding downstream 897207 32981779 ~ 32982330 (+)
G16350 NA non-coding downstream 1095133 33179705 ~ 33179940 (+)
AMCG00016830 NA other upstream 323638 31728556 ~ 31751113 (+)
AMCG00016829 NA other upstream 343305 31701669 ~ 31731446 (+)
AMCG00016820 NA other upstream 581647 31473706 ~ 31493104 (+)
G15855 LOC105013322 other upstream 1013606 31059340 ~ 31061145 (+)
G15659 NA other upstream 1837910 30236454 ~ 30236841 (+)
AMCG00016841 NA other downstream 167236 32251808 ~ 32260627 (+)
AMCG00016854 NA other downstream 414484 32499056 ~ 32503372 (+)
G16289 NA other downstream 771789 32856361 ~ 32857440 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other downstream 1235572 33320144 ~ 33333746 (+)
AMCG00016898 NA other downstream 1545440 33630012 ~ 33650080 (+)

Expression


Co-expression Network