AMCG00016847


Basic Information

Item Value
gene id AMCG00016847
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32261549 ~ 32267968 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016847
CTTCTACGCGCGGGTTTCAATTGCACAGCTGTAAACAACAACCAAACGCACTTTGAGTCGGtgttgctgtttgtgtgtgtgtgtacatatatatatacatatatgtttctcattatacatattaaaatattgtgatgTAGTTTAAACAAGTGTAAAACCAGATATACATAACGAAAACAAAGGAATTGTCGTTTGTCGTTATACAACTATATACCAGACTGCAGATTCACAGGTAGCGAAACAACATTTTTGTGGAGGTCTGAAGATCAGAGAGAGACATGAGCAAATCTAAAGATGCTACGGGTGTTTCTATCATCCTGAATTACCTGAATGAAAAGAACCGGCCGTATAGTGCTCAGGATGTGTTTGGAAACTTGCAGAAACAACACGGATTGGGAAAGACGGCAGTGGTGAAGGCCATGGAGACGCTGGCTCAGCAGGGCAAGATCAAGGAGAAAGTCTATGGCAAGCAGAAGATCTACTTTGCAGACCAGAACATGGACAGCCAGATCTCTGAGCTGAACTCGCAGGTCCAGAGCGTCCAGCAGAACTGCAGGCAGCTGGAGACAGAGCTGAAGGAGCTCACCAGCTCCTTGACAACCGAGGAAATGGTGTCTGAGATCGAAGAGCTGAAGAAGGAGTGTGAGGGCTACAAGCAGAGACTTGAGAAGATCACTTTGGCCACAAACCATATCACGCcccaggagaaggagaagGTGTACAAGGAAAGAAATCGGTACATCAAGGagtggaagaaaagaaagagactgGCAACTGATATGATGGATGCCATTCTGGAGGGATACCCAAAGAGCAAGAAGCAGTTTTTGCCCTACTACCATCTCCTGATTTGGTTCATCAGTAATGATGGCTGCAAACACAATGAGGAGTAG
>TU20119
atatatgtaaatggaccttttttgtgtgtaacgCATCCATTAAGAGAGTGAAAAGGCACCCGTGTTTTTTTTAACGTAATGTGATTTTCAGGCAACAGATACTTCGGTGTTAGTGCATGCTCCTTTTTATGCTGGATCTCGTCACACCCACAACACACAAGATCAATCGCAAGCCTCTCTAAACAGGGCAGGGGTCTATTCATGCCCATTTAATATTGTGAGGCAGGGTCCTCAAACCAGACTCTTGATGAGCTGCTGTCCAGCTGGTCTCCTAATTTTACCCTTAATAAAGACTTGGGAGATGTTCAGTCCTGATCAATGAAGGGAGGGTTTTGGTAAatgcaatcatttattttatttatcaatgctTATTGTCTGTGCCTAGTCTGCAGAAACTCTTGGATTTCTATAAAATTAACCGAGTTGCTGACAAAAACGGATACAGGTGGTGCAAACTCCAGAGTTGAGTTTCTATaggaagtatttatttaaaggctAGATCCCTTACCTGGACAATGTCTTCCTTCATGTTGCATGTCTTCGCGGTCTGGTTAGAGCCTGTTCCTCCTAGTAGGTACTCAAGGTGAGAGAGGCTGTATACCCTGCACCAGCCAACCCCACAGAGGCCTGATGACCAAAGGCAGGGATCACCTGGGTTGAGCCCCCTTACTCCCAGCCCTACTACCATCTCCTGATTTGGTTCATCAGTAATGATGGCTGCAAACACAATGAGGAGTAGATATACACTAGATAAGAGCATTTAAGTAAAACATTGTTGCGACCTAGGAAAGATCAGTGACCCATACTTTACTCCAGCATTACGCCATTGTTGGTCCTTTTAACTTTTTGCCAAAGTCCAATTAAAATGGTTCACTATACCTTTTGGATACTATTCTGGGTATCAAATGTTTAGTGGCTTAAAGATACTTTCTTCCCAAGACAACCCGTGTTCTACTGTATGAATAAATACTAGATGGGTACACCTACACCTCgagtcttattttattattcatataaaaatatttccttCTGAAAACTAAGACTTTTTGGCTACATCAGCAAGCAAAGATTCAAAGTAATGGAACCTCTTGCTGACATCTGATGTGAGTGAACATGCA

Function

GO:

id name namespace
GO:0005694 chromosome cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko05166 Human T-cell leukemia virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016847 False 893 mRNA 0.45 8 32261928 32267968
TU20119 True 1118 lncRNA 0.41 1 32261549 32262666

Neighbor

gene id symbol gene type direction distance location
AMCG00016837 LOC106607518,LOC104946854,LOC106600796,LOC102209712,LOC101480582 coding downstream 259014 31979211 ~ 32002535 (-)
AMCG00016838 NA coding downstream 409430 31844462 ~ 31852119 (-)
AMCG00016834 NA coding downstream 417497 31839831 ~ 31844052 (-)
AMCG00016835 NA coding downstream 443422 31803037 ~ 31818127 (-)
AMCG00016833 NA coding downstream 460297 31777412 ~ 31801252 (-)
AMCG00016846 NA coding upstream 1995 32269963 ~ 32284040 (-)
AMCG00016849 NA coding upstream 36682 32304650 ~ 32325161 (-)
AMCG00016850 NA coding upstream 114715 32382683 ~ 32383195 (-)
AMCG00016856 NA coding upstream 170268 32438236 ~ 32469626 (-)
AMCG00016860 NA coding upstream 201927 32469895 ~ 32470107 (-)
G16153 NA non-coding downstream 53432 32206962 ~ 32208117 (-)
G16154 NA non-coding downstream 54672 32205723 ~ 32206877 (-)
G16069 NA non-coding downstream 490275 31769730 ~ 31771274 (-)
G16043 NA non-coding downstream 541513 31718900 ~ 31720036 (-)
G16026 NA non-coding downstream 562149 31699136 ~ 31699400 (-)
G16244 NA non-coding upstream 125174 32393142 ~ 32393380 (-)
G16245 NA non-coding upstream 148223 32416191 ~ 32416444 (-)
G16248 NA non-coding upstream 157748 32425716 ~ 32425956 (-)
G16249 NA non-coding upstream 159884 32427852 ~ 32428080 (-)
G16250 NA non-coding upstream 166268 32434236 ~ 32436683 (-)
AMCG00016815 NA other downstream 873281 31380547 ~ 31388268 (-)
G15787 NA other downstream 1732049 30526292 ~ 30529500 (-)
G15706 NA other downstream 2059198 30201459 ~ 30202351 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 3035962 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 3476042 28781472 ~ 28785507 (-)
G16247 NA other upstream 155090 32423058 ~ 32423438 (-)
AMCG00016859 NA other upstream 229539 32497507 ~ 32507319 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 908108 33176076 ~ 33178883 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 1123821 33391789 ~ 33434651 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other upstream 1220757 33488725 ~ 33513579 (-)

Expression


Co-expression Network