AMCG00016848 (tubg1,LOC106601139,LOC107721485)


Basic Information

Item Value
gene id AMCG00016848
gene name tubg1,LOC106601139,LOC107721485
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32284756 ~ 32303469 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016848
GGATTTAGCGGTTTCGTAGTGTTGCTAAAGCGGGAGCCAGATCTGTTGACAGAAAACTGTATCCGATTTTCCGCTTCATTCAACCTGCAAAACACCTCGGGAAATCCACGAATGAACGAAGATGCCCCGAGAAATCATCACCCTTCAATTAGGACAGTGTGGCAACCAAATTGGCTTTGAGTTTTGGAAGCAGCTTTGTGCAGAGCATGGCATCAGCCCCGAGGGCATCGTGGAGGAGTTTGCCACAGAAGGCACTGACCGGAAAGATGTCTTTTTCTATCAGGCAGACGATGAGCACTATATCCCCAGGGCCGTGCTGCTAGACCTGGAGCCTAGAGTGATCCACTCCATCCTAAACTCACCCTACGCCAACCTGTACAACCCTGAAAACATCTACCTGTCAGAGCATGGAGGGGGAGCTGGCAATAACTGGGCTAGCGGCTTTTCTCAGGGTGAAAAAATCCATGAAGACATCTTTGACATTATCGATAGAGAGGCAGATGGAAGTGACAGTTTGGAGGGCTTTGTGCTGTGCCACTCCATTGCTGGGGGAACTGGTTCAGGTCTGGGCTCATACCTGCTGGAGAGACTCAATGACAGGTATCCCAAGAAACTGGTCCAGACCTattcagtgtttcccaaccaGGATGAGATGAGTGACGTTGTCGTGCAGCCATACAACTCCCTGCTGACCCTGAAAAGGCTGACTCAAAATGCAGACTGTGTGgtgGTGCTAGATAATACAGCTCTGAACCGCATAGCTACTGACAGACTGCACATTCAGAACCCCTCCTTCTCTCAGATTAACCAACTGGTCTCCACCATCATGTCTGCCAGCACTACCACCCTGCGCTACCCGGGCTACATGAACAACGACCTGATCGGGCTGATCGCGTCCCTCATCCCCACCCCCCGCCTCCACTTCCTAATGACTGGTTACACCCCGCTCACCACCGACCAATCGGTGGCCAGTGTCCGGAAAACCACCGTGTTGGACGTGATGAGGAGACTGCTGCAGCCCAAGAATGTCATGGTGTCCACCGGCAGGGACCGGCAGACCAACCACTGCTACATTGCCATCCTCAACATCATCCAGGGAGAGGTGGACCCCACACAGGTGCACAAAAGCCTGCAGAGGATCCGAGAGAGGAAGCTGGCCAGTTTCATCCCCTGGGGTCCTGCCAGTATCCAGGTGGCTCTGTCCCGGAAGTCTCCCTACCTGCCGTCAGCTCACCGTGTCAGTGGACTGATGATGGCGAACCACACCAGCATCTCCTCTCTGTTCGAGCGCACGTGCCGGCAGTATGACAAGCTGAGGAAGCGGGAGGCCTTCCTGGAGCAATTCCGCAAGGAGGATGTGTTCAAGGACAACTTCGATGAGCTGGACAACTCCAGAGAGGTGGTGCAGCAGCTCATCGACGAGTATGGCGCCGCCACCCGACCCGACTACATCTCCTGGGGGGCTCAGGAACAGtgacgccccccccccccgccttctctctttctcctctccatCTACCATGCCCCCCTCTCCCACTGTGGCATGTGAGCAAGGCAGCCTTTCCTTAGCTAGATCTCTGACTTGCAAAGAGACAGTCGCACCTCCCTTCACTTGGTGGTCAGCAGTGGATGTGGGACCTGAACCGTCCAGAGGGATGTAAAATACTCCTGTAGTCCAGTGGAAATGAATGATATCAGCAGATTAACACACAGTGAGATTTTCCCCATGTGGGGgcctgtttatttatgtttttattttttattgaatctCTTTAAAGGATCtgctcagatttgttttcctaaCCCTGTGTTTCCTATAGTTCCTATAGCTGAGAATCCAGAGTGCTCTGCCACCCTTCACTTATTAATATCATTTGACTATTGGGGGGGTCTTCTGCTAGACAACATGACTTCACATGCCCTTTCTTCTGTCTCGACCCGAAAAACCCGTTCCTTTCTGCAGCCACCCTGCCCTTCGTCTCTTCTGAGCTTCATCCTGCAACCATCCAGTGAGAGAAACCGAAACGCACGTCACAAGCAGGCCGTTGCTGGGCCGGTTTAAAACATGATCTGGTGGGAGATTGCAAACCAAATAACAGGGCAGAAAACGCTGTACTCATTGTTCACCAGTACGCCCCAGGCAGTCAGTAGATAAAAATAAGACTGAAGGGGGGTTAATGTCACACTTCCCCAAAGCGGCAAACAACgcatttcaaagtgttttgtttgtcaaatcGAAGTCTTACAGAATATACTTATTTAAAGTTTGTGTATTAAGCTAAGCTATACATTTATAGTACTGTCTTCAGATTTGTCATCTTGATCTTTGCACATGCATCTCAGCACTGTCAGTGCTCCCTCAACTTAATATATTTGTTCCCAGCACACCACGAAGCCTCCTGGATTCATTCAGGTAACTTGTGTAAATAGTtaaaaatgctacattttaaatactgcttTGAGTGTTTATTTTAGGAAAGAAAGCACAGAGAAGTCCTGTTCTCCAGCCTGTAGTTCAGGTGGCTCTGATGGAGAGAGCAAACCGTTCTTGgcaaatatggaaaatattcaAAGTGTCATGCAGGACTGCACGTGGAAGGTGAATAGGATCATATTGCGAGGGGTTCTGTAAGGGTGACACCTGCACATGGAAACTATTTTCCAGTGTAAGCAGAGTCTGAACTTTTATTTGTCCGAAGGCTGGAAAGGCTGTGTACATCTGTATACACACAGATGTACATGTAAACAGACACGCAGGCTCAGTCCTCACTCATCATACGTACCCGGTCTGGCCTGGCACTGAAATCAGCACTGGAGTTGGTATTGTACAGGGAAAGGTATAGAGTACTGTACCCTGCTGCAGAACTGGTCTGGATAGAAGACTGTAGATGATGAAGGGACATGAAGAGTGACAACCGGATGTGCGtgtctatacacacacacacacacacacacacacccctatgTAACATGGCTAGGTCACTGTAAGTTCCAGTTTGCACAGTGAAATGCACGTGATTTGGAAACTAATCCAGTGTATATAAAGTGTAATGTAAAAGTGCATTGTTCCCAATCCCACAGCAGTTGggcacatttcaaataaatagttttttctatTAATCAGCAGTGTGGTACGTGTGTGTTCGTACGTGTGTTAAAGCATGGCTCAGGCCCATGGTCATTGCTCAGCTCACGTAgttgtgaaaattaaattagatttctGGGAATTTCTCTGCTGGCTGCCGTTTCAATGGAGGTCACAGCTGCTTATGTAACAGACGAGCGTGCATCTGAATGTGCTTGTGTAGTAAATGTTATTCTTTAAGGATAATTGATGCAGTAGCTTTACAGTTTTCCCAGGCCTTGTCCGAAGCAGCGTCTCCCTGGAAGCTGAAAGGCCTGGTGGCTAGTGTAAGACTTTATTTCCATGGCTCAATTTGGGACTTTAGGTGTGAATATTTTGGATTCATGAATTATCCACCACCCTTTCAGAAAAGCCAGTGGCACTGGGAAcatcaaatttaattttatcGCTCCatgttatttatctttattaaataaagggtGATTCTTCCTCCCCTTGCAGTTTTAGTTTCAGAAATGACCTCCAAACAGGTCTTATTTGGTCGGCTTGTAGCTTCTGTGAACGGAAGCTGGTCTTTAAAACCCCTGGGAAGCCCCATGTGTAGGTGCTGTTTGTAGCTTTTCTTCCAGCTTTGGACCAAGCATGGAACTGCATTCAACCTACTGATCAGCTCCAGAACAATAAACTGCACTAGAATAAATAACAAGAAATGTGTCGGTTTTTATAGTCAGCTGTGTACAAATAGGGTCTTCAAATGGGTTTAATCTATGATTGCAGTTCAAGCTACTTAATTTGATCCTTGCCTTGCTCTGGTGGACTTGCAGATTCATAATGGCTCTAGAAGTGTGCTGGCTTTACCatatcattaatttattcagacTTGCCTTCTAAGAGTATTAATGATCTGTGTAGGGATATGCACCCATACATATCTCTTCTTTAaccttttgtattgtttaaatgttttttcacaaaTGTTCAACAAcccttttaaatgcaaatgtttcctGCTCTGCGTGTCTCCGCGGCAGCTGGTTGTGTAACTCACAGGCGTGTTCAAGTGTGTGCAGAGATCCCAGTGTGTCGGTAATAAatgacaacatttttaaaaata

Function

symbol description
tubg1 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic sister chromatid segregation. Predicted to act upstream of or within cytoplasmic microtubule organization. Predicted to be located in cytoskeleton. Predicted to be part of gamma-tubulin complex. Predicted to be active in cytoplasm; microtubule cytoskeleton; and nucleus. Is expressed in blastomere; oocyte stage III; and oocyte stage V. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations 4; inclusion body myositis; and muscular disease. Orthologous to several human genes including TUBG1 (tubulin gamma 1).

NR:

description
PREDICTED: tubulin gamma-1 chain

GO:

id name namespace
GO:0007020 microtubule nucleation biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0000930 gamma-tubulin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K10389 TUBG; tubulin gamma

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016848 True 4199 mRNA 0.47 11 32284756 32303469

Neighbor

gene id symbol gene type direction distance location
AMCG00016843 NA coding upstream 39221 32225792 ~ 32245535 (+)
AMCG00016840 NA coding upstream 68433 32210141 ~ 32216323 (+)
AMCG00016839 naglu coding upstream 77882 32198948 ~ 32206874 (+)
AMCG00016842 mpp3,LOC100693772 coding upstream 88527 32171872 ~ 32196229 (+)
AMCG00016844 NA coding upstream 144993 32090034 ~ 32139763 (+)
AMCG00016851 NA coding downstream 90412 32393881 ~ 32434138 (+)
AMCG00016852 NA coding downstream 177195 32480664 ~ 32481807 (+)
AMCG00016853 NA coding downstream 186444 32489913 ~ 32495747 (+)
AMCG00016855 NA coding downstream 194413 32497882 ~ 32498508 (+)
AMCG00016861 NA coding downstream 287298 32590767 ~ 32607382 (+)
G16169 NA non-coding upstream 22084 32261711 ~ 32262672 (+)
G16037 NA non-coding upstream 529329 31755042 ~ 31755427 (+)
G15995 NA non-coding upstream 640241 31615220 ~ 31644515 (+)
G15966 NA non-coding upstream 780204 31504079 ~ 31504552 (+)
G15961 NA non-coding upstream 808538 31475307 ~ 31476218 (+)
G16211 NA non-coding downstream 134785 32438254 ~ 32442585 (+)
G16290 NA non-coding downstream 554082 32857551 ~ 32859016 (+)
G16323 NA non-coding downstream 678310 32981779 ~ 32982330 (+)
G16350 NA non-coding downstream 876236 33179705 ~ 33179940 (+)
G16351 NA non-coding downstream 876770 33180239 ~ 33180439 (+)
AMCG00016841 NA other upstream 24129 32251808 ~ 32260627 (+)
AMCG00016830 NA other upstream 533643 31728556 ~ 31751113 (+)
AMCG00016829 NA other upstream 553310 31701669 ~ 31731446 (+)
AMCG00016820 NA other upstream 791652 31473706 ~ 31493104 (+)
G15855 LOC105013322 other upstream 1223611 31059340 ~ 31061145 (+)
AMCG00016854 NA other downstream 195587 32499056 ~ 32503372 (+)
G16289 NA other downstream 552892 32856361 ~ 32857440 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other downstream 1016675 33320144 ~ 33333746 (+)
AMCG00016898 NA other downstream 1326543 33630012 ~ 33650080 (+)
AMCG00016901 NA other downstream 1365124 33668593 ~ 33674361 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_06489840_06506540 TUBG1, TUBG1.L, TUBG2 coding CI01000046 null 6489620 ~ 6507607 (+)