AMCG00016854


Basic Information

Item Value
gene id AMCG00016854
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32499056 ~ 32503372 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016854
ATGCACATACTACTTGTCTGGTTCTGCTCTCCTGTTGAAGTTCAAAGTTCACAGGTCGGCTCTGTCTCCTCCTACTCACTCGGAGTAAAGATGGCGGACGAGGGAGCTCAAGGGGACTCGCAGGCCAGTTTCGCCAAAAGGATTGACCCGGTGAAGGAGCCTCTTACCCCGGAGCAGATGCAGTTCATCCATGGCTACACTTTCTACTCGGTGTCCCAGGAGAAGATCCTGGACGAGCTGGACGCAGAAGCCAAGGTCGCAAGAATGAGGGGACCCAAGACTTCAGCCaactgagctgagctgagctgagctgggcACTGGACTGTGGGGGGCTGCatctgtacagagagagagctgggggATAAGAGGAGTGGAAATGTGGGAGTGGTCAGCCTGTTTGAGTGAGGATCAGGGGCTGGTGGGGATTGGGAACAATGGGGACCTGCTTCTGTTTGTATGTTGATTCATCAGGAATTTTCTTGTGCTCATTCTGTAattcttttaataatttaattggaGCCCCTTTGTTGAGTAACTGAAGACACCAGCTGAAGGCACTGGAGTTGACCAGATGAGCCACCCTTCGATCACCAGCTCTCAACTGGACTATCTGAAGTCTCTGGATATTTGTAAATGCTGATTCAAGAGGCACAGACCAGAGCACGCACTACTATTCTCACCCACAGGGGGTTGGATTTTGCAGCTGGTCTGAAACTGATTGTTTATATTTaggaatatacattttatgtgttCTGTAAATTTAAAtctacatgtatattttttgccttcattaaaatggaaaaataagcaACCAAAAAACTTTGTCAAATAGAAATCATGTTCTTAAATTTCTCCGTTTTGTTTTCAGCTCTCAATAAACGGGTTAACATACTTGGTGTAGTCCTAATCTATAACCTTCTACACTGCAGATTTTAGCAATGTAATCCAAGAAATAAgagtttgtttcagtttggtTTGGAGCCTTGGCAGCAAGTGTGAATCTGTACGGAC
>TU20164
TCTTTCAACCGCGCATATAATGTGTTAATACTGCTTCTCATCTACGATCTGAGTTACAGCAAACATACATTAACCAAATAAACACATCTCCTTCACACACGTCTAATATTACACAATGCACATACTACGTGACTGACATATACAAAGTTACAcattacacaataataaaaaagtaaccaCACAGTCGCGGTGTAGTTCCCGTTGGTTCACACGCGTTTCTCCGGAGTGCTGTACATCGGTGCGCTGGTCACGGACAGGAGACACTGGTGTGCACTGGTGGGTCTGGCGGCTGGATACTGGACGCGCACTGGGATTCGTCGGTAGCACTTGTCTGGTTCTGCTCTCCTGTTGAAGTTCAAAGTTCACAGGTCGGCTCTGTCTCCTCCTACTCACTCGGAGTAAAGATGGCGGACGAGGGAGCTCAAGGGGACTCGCAGGCCAGTTTCGCCAAAAGGATTGACCCGGTGAAGGAGCCTCTTACCCCGGAGCAGATGCAGTTCATCCGTAAagtggagctggagcagtggaaGAAGAAAGCCCAGAAACTGCGCGGCCGCAATGTGGCGACGGGGCTGGCCATCGGGGCACTGGTGATGGGGATCTATGGCTACACTTTCTACTCGGTGTCCCAGGAGAAGATCCTGGACGAGCTGGACGCAGAAGCCAAGGTCGCAAGAATGAGGGGACCCAAGACTTCAGCCaactgagctgagctgagctgagctgggcACTGGACTGTGGGGGGCTGCatctgtacagagagagagctgggggATAAGAGGAGTGGAAATGTGGGAGTGGTCAGCCTGTTTGAGTGAGGATCAGGGGCTGGTGGGGATTGGGAACAATGGGGACCTGCTTCTGTTTGTATGTTGATTCATCAGGAATTTTCTTGTGCTCATTCTGTAattcttttaataatttaattggaGCCCCTTTGTTGAGTAACTGAAGACACCAGCTGAAGGCACTGGAGTTGACCAGATGAGCCACCCTTCGATCACCAGCTCTCAACTGGACTATCTGAAGTCTCTGGATATTTGTAAATGCTGATTCAAGAGGCACAGACCAGAGCACGCACTACTATTCTCACCCACAGGGGGTTGGATTTTGCAGCTGGTCTGAAACTGATTGTTTATATTTaggaatatacattttatgtgttCTGTAAATTTAAAtctacatgtatattttttgccttcattaaaatggaaaaataagcaACCAAAAAACTTTGTCAAATAGAAATCATGTTCTTAAATTTCTCCGTTTTGTTTTCAGCTCTCAATAAACGGGTTAACATACTTG
>TU20165
TACGACTCCAGGTTTTGTATTTAACCAAAAGGCCTACAAAGTTCAAAAGTGAGATTTCTACCTCCCAGACAAAACAAGGACGAGAGTGACGTTTAAACACAACCACTGCAGCCCTGAGCGGCACTGAGCGCATCTGGAGACTCTTGTCTAACCAAGTCTTAATTTGTCTGGTTCTGCTCTCCTGTTGAAGTTCAAAGTTCACAGGTCGGCTCTGTCTCCTCCTACTCACTCGGAGTAAAGATGGCGGACGAGGGAGCTCAAGGGGACTCGCAGGCCAGTTTCGCCAAAAGGATTGACCCGGTGAAGGAGCCTCTTACCCCGGAGCAGATGCAGTTCATCCGTAAagtggagctggagcagtggaaGAAGAAAGCCCAGAAACTGCGCGGCCGCAATGTGGCGACGGGGCTGGCCATCGGGGCACTGGTGATGGGGATCTATGGCTACACTTTCTACTCGGTGTCCCAGGAGAAGATCCTGGACGAGCTGGACGCAGAAGCCAAGGTCGCAAGAATGAGGGGACCCAAGACTTCAGCCaactgagctgagctgagctgagctgggcACTGGACTGTGGGGGGCTGCatctgtacagagagagagctgggggATAAGAGGAGTGGAAATGTGGGAGTGGTCAGCCTGTTTGAGTGAGGATCAGGGGCTGGTGGGGATTGGGAACAATGGGGACCTGCTTCTGTTTGTATGTTGATTCATCAGGAATTTTCTTGTGCTCATTCTGTAattcttttaataatttaattggaGCCCCTTTGTTGAGTAACTGAAGACACCAGCTGAAGGCACTGGAGTTGACCAGATGAGCCACCCTTCGATCACCAGCTCTCAACTGGACTATCTGAAGTCTCTGGATATTTGTAAATGCTGATTCAAGAGGCACAGACCAGAGCACGCACTACTATTCTCACCCACAGGGGGTTGGATTTTGCAGCTGGTCTGAAACTGATTGTTTATATTTaggaatatacattttatgtgttCTGTAAATTTAAAtctacatgtatattttttgccttcattaaaatggaaaaataagcaACCAAAAAACTTTGTCAAATAGAAATCATGTTCTTAAATTTCTCCGTTTTGTTTTCAGCTCTCAATAAACGGGTTAACATACTTG
>TU20166
CGCTGGCTCACTCCCCGGCTGTGGGGCAGTGGGTTCAGGGGGCCGCTGCGCTCCAGTTTGCCCAGTTTGCCCAGTCTGTGGTGGTGTCGTCCCCCCAGACTGAACAGACCGCAGTCCCAACACACGAGttacacagtacagtgcagacaCAAGCAGGCGACCGGAGACACAAGGAGCAAACGCAGTTACCATTTGAAAGCGTTTATTTGCATACGGTCGAGATAACATGGTACATGCAACATACAAACAGagtttaaaaacatacttatggcaaacaaaaagccagTATCATTACAATACCATCAATTGGGAACTGCACCTAACGCTTAATAAGTGAATTTCTACATATATGTCAATATTACGGTGTTTGTAAGTACATCACATTATTCTCTGACATTTAGGGACGCGTTGCCTGTGCAATATGCACCTGAATGAACTGACGGCGTTAGTGTATGTTTAATGAAACTGCAATCTTATCTACACAGGCTTGTGACACTTACACAGTGCCATCGTACAACGGTCTTTCAACCGCGCATATAATGTGTTAATACTGCTTCTCATCTACGATCTGAGTTACAGCAAACATACATTAACCAAATAAACACATCTCCTTCACACACGTCTAATATTACACAATGCACATACTACGTGACTGACATATACAAAGTTACAcattacacaataataaaaaagtaaccaCACAGTCGCGGTGTAGTTCCCGTTGGTTCACACGCGTTTCTCCGGAGTGCTGTACATCGGTGCGCTGGTCACGGACAGGAGACACTGGTGTGCACTGGTGGGTCTGGCGGCTGGATACTGGACGCGCACTGGGATTCGTCGGTAGCACGTATGTATCAAGACACCGCATCGCTTACTGGGATGACTGAATACTTGTATATGAAGACTGGTCGCCATACTGTCAGGTCCAGTGTGCAAGTCCTCTGCGCTTGTTTACTTCACACAGGCGACGTGCGTGATCTCGTCCTTCCGAAACATAGTCTTCAACCAGCTTTCAAAACATACTGTCTGTGCAATCTGCCAGCATTTCTCGACACATGATACTGCGCTGGCCTGTGTGTTTCCTATGCAGGTATTTCTTCCTCAGCGCTTTGACTGCACTTTGTCGGGTTTCTTCGCCGCTGCAACCTTCCGTCGAAGTGATTCTAGCACACCCTTCCCTGTTTGGGCAACTCTGTCGATGAAGTCCTTTATTGTCTTCCCGGCCACGTCCACACCGCTCTCGCTCCCCGGAGCTTCATCCCAGAGAAACACAATGGAGCACGGGGGCTGGAAAACCTGAGGCCCCAACATACTGCCCGTATACACAGCTATTCAAGAGCTAACAAACTACTGCAAACGTCGGTGTCTGTGGAACACCGGGCTTCCCGTTTCGTTCGAGAGCAAAGGTCGCGTTCGagttccgcagatctgcgcggctcgTCCAATGGAATGGGTGGgattgcgcagatctgcgccaCAGGAACGCTACCAGACCCCTCCCACGTGTGGCGTGCGGCTGGCAGCAGTTGTAAACAAGCCCAAACCCTCCCGATTGAAAGGGCCGAAGCCGCCGCAAACCAGGCGTGTGGATTGCGCTGCTGGAGTGCCAGACGTGTGCTAATAACCTTAATgtatgcactcgcaccaccgcAGTTGTCTGGTTCTGCTCTCCTGTTGAAGTTCAAAGTTCACAGGTCGGCTCTGTCTCCTCCTACTCACTCGGAGTAAAGATGGCGGACGAGGGAGCTCAAGGGGACTCGCAGGCCAGTTTCGCCAAAAGGATTGACCCGGTGAAGGAGCCTCTTACCCCGGAGCAGATGCAGTTCATCCGTAAagtggagctggagcagtggaaGAAGAAAGCCCAGAAACTGCGCGGCCGCAATGTGGCGACGGGGCTGGCCATCGGGGCACTGGTGATGGGGATCTATGGCTACACTTTCTACTCGGTGTCCCAGGAGAAGATCCTGGACGAGCTGGACGCAGAAGCCAAGGTCGCAAGAATGAGGGGACCCAAGACTTCAGCCaactgagctgagctgagctgagctgggcACTGGACTGTGGGGGGCTGCatctgtacagagagagagctgggggATAAGAGGAGTGGAAATGTGGGAGTGGTCAGCCTGTTTGAGTGAGGATCAGGGGCTGGTGGGGATTGGGAACAATGGGGACCTGCTTCTGTTTGTATGTTGATTCATCAGGAATTTTCTTGTGCTCATTCTGTAattcttttaataatttaattggaGCCCCTTTGTTGAGTAACTGAAGACACCAGCTGAAGGCACTGGAGTTGACCAGATGAGCCACCCTTCGATCACCAGCTCTCAACTGGACTATCTGAAGTCTCTGGATATTTGTAAATGCTGATTCAAGAGGCACAGACCAGAGCACGCACTACTATTCTCACCCACAGGGGGTTGGATTTTGCAGCTGGTCTGAAACTGATTGTTTATATTTaggaatatacattttatgtgttCTGTAAATTTAAAtctacatgtatattttttgccttcattaaaatggaaaaataagcaACCAAAAAACTTTGTCAAATAGAAATCATGTTCTTAAATTTCTCCGTTTTGTTTTCAGCTCTCAATAAACGGGTTAACATACTTG

Function

GO:

id name namespace
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006518 peptide metabolic process biological_process

KEGG:

id description
ko00190 Oxidative phosphorylation
ko03010 Ribosome
ko04714 Thermogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016854 False 1011 mRNA 0.45 3 32499691 32503372
TU20164 False 1308 TUCP 0.47 3 32499576 32503256
TU20165 False 1144 TUCP 0.47 3 32500796 32503256
TU20166 True 2634 TUCP 0.41 3 32499056 32503256

Neighbor

gene id symbol gene type direction distance location
AMCG00016855 NA coding upstream 548 32497882 ~ 32498508 (+)
AMCG00016853 NA coding upstream 3309 32489913 ~ 32495747 (+)
AMCG00016852 NA coding upstream 17249 32480664 ~ 32481807 (+)
AMCG00016851 NA coding upstream 64918 32393881 ~ 32434138 (+)
AMCG00016848 tubg1,LOC106601139,LOC107721485 coding upstream 195587 32284756 ~ 32303469 (+)
AMCG00016861 NA coding downstream 87395 32590767 ~ 32607382 (+)
AMCG00016863 NA coding downstream 269703 32773075 ~ 32777472 (+)
AMCG00016865 NA coding downstream 306713 32810085 ~ 32856301 (+)
AMCG00016866 ace,LOC107598651 coding downstream 392387 32895759 ~ 32921227 (+)
AMCG00016872 LOC101070426,LOC103367899,LOC104923905 coding downstream 483208 32986580 ~ 32989958 (+)
G16211 NA non-coding upstream 56471 32438254 ~ 32442585 (+)
G16169 NA non-coding upstream 236384 32261711 ~ 32262672 (+)
G16037 NA non-coding upstream 743629 31755042 ~ 31755427 (+)
G15995 NA non-coding upstream 854541 31615220 ~ 31644515 (+)
G15966 NA non-coding upstream 994504 31504079 ~ 31504552 (+)
G16290 NA non-coding downstream 354179 32857551 ~ 32859016 (+)
G16323 NA non-coding downstream 478407 32981779 ~ 32982330 (+)
G16350 NA non-coding downstream 676333 33179705 ~ 33179940 (+)
G16351 NA non-coding downstream 676867 33180239 ~ 33180439 (+)
G16395 NA non-coding downstream 821722 33325094 ~ 33328342 (+)
AMCG00016841 NA other upstream 238429 32251808 ~ 32260627 (+)
AMCG00016830 NA other upstream 747943 31728556 ~ 31751113 (+)
AMCG00016829 NA other upstream 767610 31701669 ~ 31731446 (+)
AMCG00016820 NA other upstream 1005952 31473706 ~ 31493104 (+)
G15855 LOC105013322 other upstream 1437911 31059340 ~ 31061145 (+)
G16289 NA other downstream 352989 32856361 ~ 32857440 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other downstream 816772 33320144 ~ 33333746 (+)
AMCG00016898 NA other downstream 1126640 33630012 ~ 33650080 (+)
AMCG00016901 NA other downstream 1165221 33668593 ~ 33674361 (+)
G16546 NA other downstream 1543999 34047371 ~ 34047720 (+)

Expression


Co-expression Network