AMCG00016865


Basic Information

Item Value
gene id AMCG00016865
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32810085 ~ 32856301 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016865
ATGTCCAAAATGGGTAGTGTCTTCCCTCTTCCACACCTGGGGGAGTCAAACCAGGAGCTGGGACCCCCTCCATCTGTGGATGAGGCTGCTAACACCCTGATGACGCGCCTGGGATTCCTGCTGGGAGAGAAAGTGAACGAGGTGCCCCCCGGAGCCCAGTACAGCATGGAGGAGCAGGACGAGAACCAGAGCTCGGCGGTGACCCAGCGCATCAGCCCCTGCTCCACACTGACCAGCAGCACTGCCTCCCCCCCGGCCGGCAGCCCCTGCTCCACCCTCCCCCCCGCCACTGCCGGCAACCCAGGCAACAAGGACTGCGCCTACGGTACTGTCACCAGCCCCACCTCCACCCTGGAGAGCCGGGACAGCGGGATCATCGCCACCCTGACGAGCTACTCGGAGAACATGGACCGGGGAGGCAAATACGGCGAGGGTTCCCGAGGCAACCTGAAGCCCTGGCAATCTCAGAAGTCGGGCATGGACTCTTGCCTGTACCGGGTGGATGAAAACATGACCGCCTCCACCTACAGCCTCAACAAGATCCCAGAGCGCAACCTGGAAACCATCTCCTCGCACTCCGTGCAGTCCATCCCCCTGTACCTCATGCCTCGGCCCAACTCCGTGGCAGCCACCAGTTCCGCCCACCTGGAGGACCTGGCCTACCTGGATGAGCAGAGACACACCCCCCTGCGCACCTCCCTTAGGATGCCGAGGCAGACCATCGGCGCTGGACGCTCTGGCCAGGACCTGCGAGCTTGCACTAACATCCATGCCTGGCACTCTCACTCACTGCGCTTCGCCCCCTACCGGCCCCCCGACATCTCCCTGAAGCCGCTGCTGTTTGAGGTGCCCAGCATCACCATGGACTCGGTGTTCATCGGCCGCGACTGGCTCTTCCAGGAGGTGGAGGGCCAACTGCGCAGTGCCAACTCCAACACCAACCGCGGCGTGGTCATCGTGGGCAACATCGGCTATGGCAAGACCGCCATCGTCTCCCGCCTTGTGGCCATGAGCTGCCACGGCACCCGCATGCGGCAGATCGCCTCTGACAGCCCGCACGCCTCACCCAAACATGGAGATGGGAATAGGGATTTGCCCCTGAGCCAGCCCCAGCCCTCCCATGGCACCCTGGGTGGGGGCAGCTGCCCTGGGACCCCTGAGATGCGTCGGCGGCAGGAGGAGGCTATGAGGCAGACAGCTCTGAACCACACAGAGCCGGCATGGGGTCTCACAGGGGCCACACAGAGCCGGGACGGGGTGGTGGCGTACCACTACTGCCAGGCAGACAATGCCTACACCTGCCTCGTCCCGGAGTTCGTGCACAACGTGGCGGCGTTGCTGTGTCGCTCACCACAGCTTATCGCCTACCGGGAACAGCTGCTGCGAGAGCCCCACCTCCAGAGCATGCTCAGTCTGCGCTCCTGCGTTCAGGACCCCCTGGCCTCCTTCAGGAGAGGCGTACTGGAGCCCCTGGACACCCTGTACAAAGAGAGGAAGATTGCCGATGAAGACCTCATCATCCTGATCGACGGGCTGAACGAGGCAGAGTTCCACAAGCCAGATTACGGCGATACTATTGTCTCCTTCCTGAGCAAGACCATCGGCAAATTCCCGCCTTGGCTGAAGCTGATTGTCACTGTGAGGACCACACTGCAGGAAATCACCAAACTGCTGCCCTTCCACCGGATCTCTCTGGACCGACTGGAGGAGAACGAAGCCATCGACCAGGACCTGCAGGGCTATATCCTGCACCGCATTCACTGCAGCCCCGAGATCCAGAATAACATCTCGCTAAACGGCAAGATGGACAACACCACCTTTGGCAAGCTGAGTGCCCACCTCAAGGCCCTGAGCCAGGGGTCCTACCTCTACCTGAAGCTGACTTTCGACCTCATCGAGAAGGGCTACCTGGTGCTCAAGAGCTCCAGCTACAAGGTGGTGCCGGTGTCCCTGGCCGAGGTCTACCTCCTGCAGTGCAACATGAAGTTCCCCACGCAGTCTTCCTTCGAGCGCGTGCTGCCCCTGCTCAACGTGGCCGTGGCATCCCTGCACCCATTGACCGATGAGCAGATACACCTGGCCATCAACGCGGGCTCCGTCCAGGGCACCCTGGAGTGGGACGACTTCCAGCAACGCATGGACAACCTCTCCATGTTCCTCATCAAGCGGCGCGACGGCACGCGCATGTTCGTTCACCCTTCCTTCCGAGAGTGGCTCATCTGGAGGGAGGAGGGCGAGAAGACCAAGTTCCTCTGTGACCCCAGGAGTGGACACACCCTGCTGGCATTCTGGTTTTCCCGACAGGAAGGGAAGCTTAATCGGCAACAGACCATTGAGCTGGGTCACCACATCCTCAAAGCACACATCTTCAAGGGCCTAAGTAAGAAGGTTGGGGTTTCCTCATCAATCCTGCAGGGACTATGGGTGTCGTACAGCACAGAAGGCCTCTCCACGGCCCTAGCCTCACTGCGCAACCTCTATACACCCAACATTAAGGTAAGCCGGCTGCTGATCCTGGGCGGCGCCAACGTGAACTACCGCACAGAGGTGCTGAACAATGCGCCCATCCTGTGTGTTCATGCCCACCTGGGCTACACCGACACTGTGGGGATGCTGCTGGAGTTCGGTGCCAGTGTGGACTCCAGCTCCGAGAACGGCCTCACTCCCCTGGGCTACGCTGCCGCCGCTGGGCACCTTCCCATCgtgGACCATCTGGACAAGAACGGCCAATGTGCACTGGTACACGCGGCACTGAGAGGTCACCTGGAAGTGGTGAAGTTCCTGATCCAGTGTGACTGGACAATGGCCGGCCAGCAGCAGGGCGTGTTTAACAAGAGCCACGCTATTGTGTCCTACTTGCTGGACCTCCCTGAGAAagatgaggaggaggtggaACGTGCCCAGATCAACAGCTTTGACACCCTATGGGGAGAAACAGCCCTGACGGCAGCTGCAGGCAGAGGGAAGCTCGAGGTGTGCCGGCTGTTACTGGAGCAGGGGGCGGCTGTGTCTCAGCCCAACCGGAGGGGGATCGTGCCGCTATTCAGCGCTGTGCGGCAAGGGCATTGGCAGATCGTTGACCTGCTGCTCACTCACGGGGCCGACGTCAACATGGCAGACAAACAGGGCCGCACCCCTCTGATGATGGCTGCTTCTGAGGGTCACCTGGGGACCGTGGAGTTCCTGCTGGCACAAGGCGCCTCTCTATCTCTGATGGACAAGGAGGGGTTGACGGCTCTGAGCTGGGCCTGTCTCAAAGGCCACCTGGCTGTGGTGCATTCCCTGGTCGAAAGGGGGGCCGCCACTGACCATGCTGACAAGAACGGACGCACGCCACTGGACTTGGCCGCTTTCTATGGCGATGCTGAGGTGgttcAGTTCTTGGTGGATCACGGAGCCATGATTGAGCATGTGGACTACAGTGGGATGCGCCCCTTGGACCGAGCTGTGGGCTGCAGGAACACCTCGGTGGTAGTGACCCTACTTAAGAAAGGAGCCAAGATAGgctgtCAGACCCTGCCCAGTCGGCCAAAAGGTCCAGCTACATGGGCGATGGCCACTTCCAAGCCTGACATCATGATCATTCTGCTGAGCAAACTGATAGAGGAGGGCGACAGCTTCTATAAGAAGGGGAAGGTGAAGGAGGCGGCTCAGAGGTACCAGTACGCCCTGAAGAAATTCCCCAGAGAAGGTTTCAGTGAGGACCTCAAGACTTTCAGAGAACTCAAGGTTTCCCTTCTGCTCAACCTCTCCCGGTGCCGCAGGAAAATGAACGACTTTGGAATGGCTGAGGAGTTTGCCACCAAGGCGCTAGAGTTGAAACCAAAATCATACGAGGCCTATTACGCCAGAGCCCGTGCCAAGCGCAGCAGCAGGCAGTTCCCAGAAGCCCTGGAGGACCTGAATGAGGCCATGAAGCAGTGTCCCAACAACCGCGAGATCCAGCGGCTGCTCCTGCGAGTGGAGGAGGAGTCCGAGGagccccctccacctcctgagCCGCGTCTGGAGGACATGGAGCCCGTGCAGGACCTCTTTGAAGATGAGGACTACCTGGAGCGGGAGATGGAGGGGGTGTCCATGGGCCTGTCACCCGAGCCCAGGGCCAACCCCCCCAGCTTGCCCATCATCCAGAGCCCCCCACAGTCCCCTGCCCACCGCGACTCGGCGTACCTCTCGGGGGGCTCCCCACTGGGCCAGTCCTTTGATTTCCGCCCGAGCCCTCCATCCATGGCCTCCCCGACCCGGCAGGGCTACCAGTCCACCTCGCCGTCCCTCTCGCCCACCCACCAGAACTCCCACTACCGGCCCAGCCCCCCCCATACCTCCCCTGCGCATCAGGTCCCTTCCTACCGCTTcagcccccccccgcccctggGTGGCggtgggggcgggggagggggcCAAGGCAAGGACTACCAGAGCCCCCCTCCGTCCCCCCTGCGCCGGGGCCCCCAGTACAGGGCCAGCCCTCCCACAGAGAGCATCTGCCTCTACCGCCCCCAGTCGGGCTCCCCTGTGCGGTACCAGCAGGAACAGCTGCCTGGGAGGCCCAAGTCCCCACTGTCTAAGATGAGCAGCCAGCGCTCCTATCAGCTGACCTCCCAGTCCTCCCAGTCCTcccagcaccagcagcagcagcagggcctGAGGCTGCAGCCGGCCAAGGCCCAGATTGTGCGCACTAACCAGCCCAGCTCAGCGGTGCACTCCAGCGCTGTGATGGGCAGCAGCGCCTACGGCCAGATGGCACACCCCATCAGCAGCCGCTACCAGGGCGGCTCAGTGGACGTGGAGAGCCGGCTGATGTACCAACCTTCCCTGGATGGCCGGCCTATGCCACAGGTGCAGGCCAGTCTGAGCGCTGGGGCCATCTGCCAGCATGGCGGGCGTGGTGGGGGAGTAGATTCAGGACTGGTGAAGGAGGAGCTCCCCCAGCGGCCTTCCTCAGCGTACCGTGGCAgtggtggaggtgggggagggggcccCGGGGGGATGCGCTATGGCCAGACCCCGCAGATCAGCCGCAGCCAATCGGCCGCCTACTACCCCGTGTCCAAACACGAGCTAGAGCGTGCCGTGGGCCTGCCCCAGTGCCAGCTGGGCTCCCCAGAAATCCCCCACTTAGTACGGCGGCCAGTCAGCGCCAACCCCTCTGAGATCAAGCCCCACCCTCCGACCCCTCGGCCCCTGATCCATTCCCAGAGCGTGGGCCTGCGCTTCTCCCCATCCAGCAACAGCCTGTCCTCCGGCTCCGCCTGCAACCTAGCCCCAGGCTTCCGGCCCTCAGCATCCATCCAGCAGATGGAGATCCCCCTGAAGCCATCCTACGAGCGCTCCGGCGACGACCTCTCACCCGTGTCCCCCTCGCAAGGTGGCGGTGGGGGTGACGGCAGGGGCGGCGGGGTGTACCAGGTAGAGACCTCCCGCTCCCGGACCACCCCCTTCATGGGCATCATCGACAAGACGGCACGGACTCAGCAGTACCTCCACCAGCCGTCCCGGCCCTGGGCCGTGTCCTCCCTGGACACGGTCATCACCAGCCCCACCTCCCCCGGCAATCTGATTCAGCAGGTGGGTGGCGGGGGCAGCGGCTCCTCCTacagcccccccacctccctggGTAACATCGCCTACTACAACAAGACCAACAACGCCCAGAACGGCCACCTGCTCGACGATGAGTACTACACCCAGCCCCCACAGCCCTCCCTGTCCAAACTGGCCAACGGCTCCCGGGTGGGGGGCGGTGGAGGTGGGGACATCTTAGAGAGGGTCAGCCAGGTACCCACATACCCAGATGTCAAGGTGGCGCGGACACTGCCCGTTGCCCAGGCCTACCAGGACAGCATGTACAGACAGCTCTCCCGGGACTCCCGGCAGGGACAGACGTCGCCTATTAAACCAAAGAGACCATTTGTGGAGTCGAATGTGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016865 True 5937 mRNA 0.63 27 32810085 32856301

Neighbor

gene id symbol gene type direction distance location
AMCG00016863 NA coding upstream 32613 32773075 ~ 32777472 (+)
AMCG00016861 NA coding upstream 202703 32590767 ~ 32607382 (+)
AMCG00016855 NA coding upstream 311577 32497882 ~ 32498508 (+)
AMCG00016853 NA coding upstream 314338 32489913 ~ 32495747 (+)
AMCG00016852 NA coding upstream 328278 32480664 ~ 32481807 (+)
AMCG00016866 ace,LOC107598651 coding downstream 39458 32895759 ~ 32921227 (+)
AMCG00016872 LOC101070426,LOC103367899,LOC104923905 coding downstream 130279 32986580 ~ 32989958 (+)
AMCG00016873 NA coding downstream 156617 33012918 ~ 33021870 (+)
AMCG00016875 NA coding downstream 179001 33035302 ~ 33109567 (+)
AMCG00016874 NA coding downstream 292190 33148491 ~ 33151617 (+)
G16211 NA non-coding upstream 367500 32438254 ~ 32442585 (+)
G16169 NA non-coding upstream 547413 32261711 ~ 32262672 (+)
G16037 NA non-coding upstream 1054658 31755042 ~ 31755427 (+)
G15995 NA non-coding upstream 1165570 31615220 ~ 31644515 (+)
G15966 NA non-coding upstream 1305533 31504079 ~ 31504552 (+)
G16290 NA non-coding downstream 1250 32857551 ~ 32859016 (+)
G16323 NA non-coding downstream 125478 32981779 ~ 32982330 (+)
G16350 NA non-coding downstream 323404 33179705 ~ 33179940 (+)
G16351 NA non-coding downstream 323938 33180239 ~ 33180439 (+)
G16395 NA non-coding downstream 468793 33325094 ~ 33328342 (+)
AMCG00016854 NA other upstream 306713 32499056 ~ 32503372 (+)
AMCG00016841 NA other upstream 549458 32251808 ~ 32260627 (+)
AMCG00016830 NA other upstream 1058972 31728556 ~ 31751113 (+)
AMCG00016829 NA other upstream 1078639 31701669 ~ 31731446 (+)
AMCG00016820 NA other upstream 1316981 31473706 ~ 31493104 (+)
G16289 NA other downstream 60 32856361 ~ 32857440 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other downstream 463843 33320144 ~ 33333746 (+)
AMCG00016898 NA other downstream 773711 33630012 ~ 33650080 (+)
AMCG00016901 NA other downstream 812292 33668593 ~ 33674361 (+)
G16546 NA other downstream 1191070 34047371 ~ 34047720 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_04613815_04652751 TANC2 coding CI01000047 null 4613815 ~ 4652751 (-)