AMCG00016872 (LOC101070426,LOC103367899,LOC104923905)


Basic Information

Item Value
gene id AMCG00016872
gene name LOC101070426,LOC103367899,LOC104923905
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32986580 ~ 32989958 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016872
ATGACTGAATCAGCGGTTCTCCACCCAGAATCATCCGCAGTCACCATTTCCGCCCCAGGCAGACCCACGCTGGCAGCGCAGCCCCTTCCCCGACTCAGCATCGGGAGGAAGACCCTAGTGGCGGCGGCCGTTGGGGTGATGCTGGTCCTGGTGCTGGTCATCCTCATTCCTGTGCTGGTGAGCTCAGTTGGGACAGACGCCGGGCACTACGAGATGTTGGGCACCTGCCGCATGGTGTGCGACCCTTACCTGACCAAGGGCACCACCACCAGCGCCAGCATTCGGGCCGAAGCAGAGGCCCTGAGCGACCACAGCATCGTGCCTCCCCCTTCCACCTTGGTCCAGGGGCCACAGGGGAAGCCAGGCAGGCCTGGGAAGCCTGGACCCCCCGGGCCCCCAGGAGAACCGGGACCCCCAGGTCCCATTGGCCCCCCTGGAGAGAAAGGGGAGCCAGGGAGGACTGGGATACTGGGCCTCGGTGGCAATGGAGCTATCAGCACGGCCACCTACACCACCGTGCCCAGGGTGGCTTTTTACGCCGGGCTTAAGAACCCCCACGAGGGCTATGAGATCCTCAAATTTGACGACGTGGTCACCAACCTGGGCAACAACTATGATGGCACCACGGGCAAGTTCATCTGCAACATCCCTGGCACTTACTTCTTCATCTACCACGTCCTGATGAGGGGGGGCGACGGCACCAGCATGTGGGCAGACCTCTGCAAGAACGGCCAGGTGGGTGGGGAGTTTTACTTTTCTTAA

Function

NR:

description
PREDICTED: C1q-related factor-like

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016872 True 762 mRNA 0.62 2 32986580 32989958

Neighbor

gene id symbol gene type direction distance location
AMCG00016866 ace,LOC107598651 coding upstream 65353 32895759 ~ 32921227 (+)
AMCG00016865 NA coding upstream 130279 32810085 ~ 32856301 (+)
AMCG00016863 NA coding upstream 209108 32773075 ~ 32777472 (+)
AMCG00016861 NA coding upstream 379198 32590767 ~ 32607382 (+)
AMCG00016855 NA coding upstream 488072 32497882 ~ 32498508 (+)
AMCG00016873 NA coding downstream 22960 33012918 ~ 33021870 (+)
AMCG00016875 NA coding downstream 45344 33035302 ~ 33109567 (+)
AMCG00016874 NA coding downstream 158533 33148491 ~ 33151617 (+)
AMCG00016885 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 coding downstream 186313 33176271 ~ 33177932 (+)
AMCG00016886 NA coding downstream 217514 33207472 ~ 33221284 (+)
G16323 NA non-coding upstream 4250 32981779 ~ 32982330 (+)
G16290 NA non-coding upstream 127564 32857551 ~ 32859016 (+)
G16211 NA non-coding upstream 543995 32438254 ~ 32442585 (+)
G16169 NA non-coding upstream 723908 32261711 ~ 32262672 (+)
G16037 NA non-coding upstream 1231153 31755042 ~ 31755427 (+)
G16350 NA non-coding downstream 189747 33179705 ~ 33179940 (+)
G16351 NA non-coding downstream 190281 33180239 ~ 33180439 (+)
G16395 NA non-coding downstream 335136 33325094 ~ 33328342 (+)
G16512 NA non-coding downstream 661123 33651081 ~ 33651289 (+)
G16542 NA non-coding downstream 1003224 33993182 ~ 33995382 (+)
G16289 NA other upstream 129140 32856361 ~ 32857440 (+)
AMCG00016854 NA other upstream 483208 32499056 ~ 32503372 (+)
AMCG00016841 NA other upstream 725953 32251808 ~ 32260627 (+)
AMCG00016830 NA other upstream 1235467 31728556 ~ 31751113 (+)
AMCG00016829 NA other upstream 1255134 31701669 ~ 31731446 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other downstream 330186 33320144 ~ 33333746 (+)
AMCG00016898 NA other downstream 640054 33630012 ~ 33650080 (+)
AMCG00016901 NA other downstream 678635 33668593 ~ 33674361 (+)
G16546 NA other downstream 1057413 34047371 ~ 34047720 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other downstream 1103318 34093276 ~ 34099596 (+)

Expression


Co-expression Network