Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00016873 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 33012918 ~ 33021870 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0005581 | collagen trimer | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00016873 | True | 216 | mRNA | 0.54 | 2 | 33012918 | 33021870 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00016872 | LOC101070426,LOC103367899,LOC104923905 | coding | upstream | 22960 | 32986580 ~ 32989958 (+) |
| AMCG00016866 | ace,LOC107598651 | coding | upstream | 91691 | 32895759 ~ 32921227 (+) |
| AMCG00016865 | NA | coding | upstream | 156617 | 32810085 ~ 32856301 (+) |
| AMCG00016863 | NA | coding | upstream | 235446 | 32773075 ~ 32777472 (+) |
| AMCG00016861 | NA | coding | upstream | 405536 | 32590767 ~ 32607382 (+) |
| AMCG00016875 | NA | coding | downstream | 13432 | 33035302 ~ 33109567 (+) |
| AMCG00016874 | NA | coding | downstream | 126621 | 33148491 ~ 33151617 (+) |
| AMCG00016885 | fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 | coding | downstream | 154401 | 33176271 ~ 33177932 (+) |
| AMCG00016886 | NA | coding | downstream | 185602 | 33207472 ~ 33221284 (+) |
| AMCG00016881 | NA | coding | downstream | 199664 | 33221534 ~ 33244483 (+) |
| G16323 | NA | non-coding | upstream | 30588 | 32981779 ~ 32982330 (+) |
| G16290 | NA | non-coding | upstream | 153902 | 32857551 ~ 32859016 (+) |
| G16211 | NA | non-coding | upstream | 570333 | 32438254 ~ 32442585 (+) |
| G16169 | NA | non-coding | upstream | 750246 | 32261711 ~ 32262672 (+) |
| G16037 | NA | non-coding | upstream | 1257491 | 31755042 ~ 31755427 (+) |
| G16350 | NA | non-coding | downstream | 157835 | 33179705 ~ 33179940 (+) |
| G16351 | NA | non-coding | downstream | 158369 | 33180239 ~ 33180439 (+) |
| G16395 | NA | non-coding | downstream | 303224 | 33325094 ~ 33328342 (+) |
| G16512 | NA | non-coding | downstream | 629211 | 33651081 ~ 33651289 (+) |
| G16542 | NA | non-coding | downstream | 971312 | 33993182 ~ 33995382 (+) |
| G16289 | NA | other | upstream | 155478 | 32856361 ~ 32857440 (+) |
| AMCG00016854 | NA | other | upstream | 509546 | 32499056 ~ 32503372 (+) |
| AMCG00016841 | NA | other | upstream | 752291 | 32251808 ~ 32260627 (+) |
| AMCG00016830 | NA | other | upstream | 1261805 | 31728556 ~ 31751113 (+) |
| AMCG00016829 | NA | other | upstream | 1281472 | 31701669 ~ 31731446 (+) |
| AMCG00016880 | dcaf7,LOC100702343,LOC105030232,LOC105898766 | other | downstream | 298274 | 33320144 ~ 33333746 (+) |
| AMCG00016898 | NA | other | downstream | 608142 | 33630012 ~ 33650080 (+) |
| AMCG00016901 | NA | other | downstream | 646723 | 33668593 ~ 33674361 (+) |
| G16546 | NA | other | downstream | 1025501 | 34047371 ~ 34047720 (+) |
| AMCG00016909 | mien1,LOC107566883,LOC107755209 | other | downstream | 1071406 | 34093276 ~ 34099596 (+) |
