AMCG00016880 (dcaf7,LOC100702343,LOC105030232,LOC105898766)


Basic Information

Item Value
gene id AMCG00016880
gene name dcaf7,LOC100702343,LOC105030232,LOC105898766
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33320144 ~ 33333746 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016880
ATGTCTCTGCACGGCAAGCGAAAGGAGATTTATAAATACGAAGCACCATGGACGGTTTACGCCATGAACTGGAGTGTCCGTCCAGATAAGCGTTTCCGCCTGGCGCTGGGTAGCTTCGTGGAGGAATATAATAACAAGgTGCAACTGGTAGGACTGGAAGAGGAGAGTTCAGAGTTTATTTGCAGGAATACCTTCGACCATCCCTACCCCACCACGAAGATCATGTGGATCCCAGACACCAAGGGAGTCTACCCTGACCTGCTGGCCACCAGTGGGGACTACCTGCGCATCTGGAGGGTGAGTGACACAGAGACGCGCCTGGAGTGTCtgctaaacaacaacaagaactcGGACTTCTGTGCCCCTCTCACTTCCTTTGACTGGAATGAGGTGGACCCCAACCTGCTGGGCACCTCTAGTATTGACACCACCTGTACGATCTGGGGTCTGGAGACTGGGCAGGTGCTGGGCAGAGTCAATTTGGTGTCTGGACACGTCAAGACCCAACTCATCGCCCACGACAAGGAGGTGTACGATATCGCCTTCAGCCGGGCCGGGGGGGGGCGCGACATGTTCGCTTCAGTGGGGGCGGACGGCTCCGTCAGGATGTTTGACCTGCGGCACCTGGAGCATAGCACCATCATCTATGAAGACCCCCAGCACCACCCCCTGCTGCGGCTCTGCTGGAACAAGCAGGACCCCAACTACCTGGCTACGATGGCCATGGATGGCATGGAGGTGGTGATTCTGGATGTGCGTGTCCCCTGCACGCCGGTGGCCCGGTTAAATAACCACCGCGCCTGCGTCAACGGCATCGCTTGGGCGCCCCACTCCTCCTGCCACATCTGTACCGCAGCCGATGACCACCAGGCCCTGATCTGGGACATCCAGCAGATGCCCCGAGCCATTGAGGACCCCATCCTGGCCTACACTGCTGAGGGGGAGATCAATAACGTACAGTGGGCCTCCACCCAGCCAGACTGGATCGCCATCTGTTACAATAACTGCCTGGAGATCCTCCGGGACAGAGACCAAAATACAGAAGCCACCCCGGAGACCCCTGGG
>TU20376
CCACCCAAAAAGCAACTTTATTTAGCTGATTGGATTAAATctacaaacagacttttatccCACTGAAACTTAACAGAAATCCCCTTTGAACATCAGAAATCTGTATACAACACTCCAATCTATTGAAGCTAGtcttcttaatatatatatatttcaattgagCTAAATATTATTGACATTATCTGCCAGGAATGATGgcaacactttaaaatagaCTAGGTGGTGAATGAATGGTgccatacatatttatttcccgcaataatcaatttgtattcatttgaatatgtGGGACTACATTAGGTACATTTCTGTCTTCTGTAATAGATCGAAGGTTGATTTTAACCAGGCATTGTCAAAGAAAGCCAACGGTGGACAACAGTCAAGCACAATGTATTATACTCCCATCTGCCCAGGCTGTGTGGAGTAGCTTGGTTGACCACCCTGTGTTCAGACATAGGAAGTACTGTTATCCCTGAGAAAACATCAAGCAAACTTCCTATTCTCCTAAATGATTGCATTTCACCTAAACACCTGTTCAGCATTCACCTCATCACTTTAATACATTCCacaaataatgttgtttttaaattaaaagatccCTCATAGCATATTAgccatcatgtttttattattgtgcacCCAAGTTAAAAGAGAATTTTCCAGCCCctttaaaacacaagaaatgAGCCCAGGTCTGAAGGAATTGCTCCTCTATGTGTGTGCAGGACAGAGACCAAAATACAGAAGCCACCCCGGAGACCCCTGGGGTAAGCAATGCCTGTTTTTGAACAatatgatgtgtatatatatataacaccaCAAACATTAGCTGGGGATATgacaattgttttgtgttatttgttttcttgttatgtatttatttcctgatCGTGTGTCTGTGGGCAGGATGCCTAACTATAAAGCAAGGGTACTACACTCCAGTTCTCAGTGGAGCCCTAGGCCTTGGATACTGAACGGAATCATTTACTTGATTATGAAGAAAGTTTAAAGATATTTTATCCTGTACATTGTTCTGTTAATAAGTTAGTGTCAGCATATACTGAAGTGCTAGCATCTGTAATACCTGCAGGGTAGTGGCCCACTCTCTTGATAACTGGGAAACTGTCTGTGATGAGTTCAGTCAAGTAACTAAGCTGGGAGGGAGTTAAAACCAACATTCTTCATCCTTTGAGTACCTTCACACTCTTCATTATCATCGTAACTGTGATTCTGTGAACTGTTCTAGGATGAtttcaagaaaagaaagaaaataaaaatactggtGTAAAGCATTGTTTGCAATATTACatcttagttgtttttttaccattGTAAGCTTTTTCTCAGTTCTGCCCTGTTATTCAAATAGTTCCAGAAATCTTAGTTTTTTGTAACCATTTTGACAGACAGAGCTGACTTGACTTCCTACACTGAGCTGCCAGAGCCGGCAAAATCCAGCAGCCAGCCAGATGTGTGTGACCTGGAACCAAAGAGAATGCAGAGATGGGAAAGACCCCCTAAAACGGGCCATCACAATCTGGTAGATCTATCCTAATAACACCAACCCAACATTCACTGTTAAGATTAATATTCCAGaccatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgggggtgggggggacgaGTCCTggatgtctctctctccctctctctccaggtagGAAACATAATGTAACTGTGCAGTCCTTTCACCTTTTCCTGCCTTTTGTAAATTCCTGTTCCTCTCCAGGAAGTCTCTGTGTGGCGGAAGTGTTCTCTTCATGTAGGCCTTGGATCaatttgtttcatgtttcaAGTCAGAGTCAAATACCTGGAGTTATCCTACCAAACAAAAGCCACCCAGCCAGGTCCATGCCACACCTGAGTTTCAGAGACAGCAGAAGAGTAAACCACCATATGTACCTTTCTCTGGTAACAACTGTCCTATGAGAGAGCTAAGTATCaccacaacaaaataacatgACAAGTTGTTACGTATTCTGCCACACCATTCCTTATTTTCCAGTTCCATATCCTGGCCACACTCACAGTAACACCCCGAAGGGTATGAGTTACCAGGCTTTTTCATAGTTATCTAtggtttcattcatttttggGTGAATCACTAGTTGCCGCTGTGCAGTTGCTCTGTGGATGCggtgtgtaaaaatgtaaaaccctctactttaaattaatatgttttgGATCATATATGTAAGTGTGTAGGTTCAGCTGTATTCTGACTGTTTGCAAAACCTAGTTTCAGTCTTATTTGAGTCAGCTGTGTTCCCAATCTCAAAACATCACATGTATTCAGGCTAATTATTTGGGGCTTGCAAATGAAAATTACAGGAATATATTcaattatgatttgttttaaaaggggCCACTAAAGCTAACTATGCTCAACATCACTATTCCTGAACTGACCTTTCCATGCCAAGGAAACATTGAGATTGAAGTCTGTTCAGTCTGTGTATGCCTACCCTTATCCCTGCTTGTATAGACTGTAGGGCTCTGAGTATAGACTTGTTGTAGACATCACAGGTACCTTTTGGTTGGTAGCTTAGGCGGACCTGCAAAAAACAGTGCATTGACGACTTCTTCCAGAATTACAGTGCACTCCGTTTATATAGCAATGACTGATATACAAATTTGCCACATATATCGATCAAAACCACTGGGACACAATCATCCCTACACTAACCCCTGCTAAATCACTGCAACATGTAAAACGATACTCAATAAAGTGCAATGACATGTCACAAGCCAATAAAGTTTACTTGAATTTGAGTGTGATGACATCTCACATTATCGAGCACCTAAAGTAAAGTCCTATCCCAGCTTGGGAAATAACAGGATCTGCTGTTTATTTAGCAGTCCACATGGCAAGGAATGGAAAGCCTCCTTCCGCAGACAACACCGTCTGGAGTCCTGCTATTGTCTTAGGGACTTTATCTTAAGACCTCACTAGCTCCACTCACTTAAactttgtgtatatttgtaacTTCCtgtatagtattattattgcctTGAATAAAAGCCCCACTTGGCTAATTGATTGTGTGgtaatgataaataatacaatattattattattattattattattattattattattattattattattattattattattaacaagaataaaaactgttgcaatgttggtatttattttttccatgttaaatatgtttaaaagtaaccataaatgtgatgtttctcaattgaattaaaaaataaataaaataaataaagacagttctttaaaatgtaacagtcGATTTCATACATCCTTGGCATTTGACTTGGGAGAACCAGCTGCTTATGCACCTCTCTCCATCGTGGAGGGAGGACGTTCGTATAAACGGAGGGCACTGCATTTCAATCGAGCTGATCAAGAAAGAAATATCCAGTGCAACACTCCAGGACTACACCTGTTTTATAGGGTTAAGGCAAACATTAGctagaatgaaaaaaataaaaaaataaaatgaagaaaaataaataaatatgtaactttattaaatgaaaatcagGAAGAAAACCCTACTTATAACAACAGTAAAATGATACTAATCCTGAAGTGGAAAGTGTCCTATGGTGCTGTGCACATACATGTTATAGCTAGTGTTGCACTACAGCGGCCCTACCTGCAGCTTCCCTCGCCAGCGCCACACGGCTTACTGCAGGATGATCCAAAACTGAAGTTTAGAAGCACAAAGCAAAGCCAAACTGGTCTTTACACTTGTGCACTTGATTAGCCCTACCACTGAGGGGATGTACCCACCACAATGTAGACACGGAGTGGGTCAGGTTGTGCTTTAGCTCGTCGAGGGGAATATTTTGTGCAAATTGTCAGACACAACTGCGGGGAAGTGGCAGTAGGTGCCTGTGCCACTGGCTCATCTGAAACACAGAGGCAATGAGTCAACATGCCCAGCCGGCCAGTCACTCGATTAGTTCCGGGAGGGACGCAAGACAAACAAGGAGAGACACAATCCAGCCATGGACTGAGCCTGTACACGACTGGAaagttattattagttttttccgTGGCCAAAAATCCAGGATGCTTCAACACTGGAGAAGACTAGGAGAGCACAGTGTGACACTAACACCCTCTACCTTGGTTGGGGTTCAGTCAGTGTTTGAAAGCGTTGGCACATCGTGGGCGATACAATGGCTTCCAGCCCTGGTCACCTATCGCCCTGTGCTGCTGTCCCTGAGCCTGTCCTGTGCTCCACCGGGAGGGGCTCTCTGGGATCTGGGAGAGCTTGGGTGAAGTAGGGCGGAGGCaatggaggagaggagggagggaggaaggaaggaTGGGGTGGGGACTTTGCGGTTCTAGCTGGCGGGCAGGACGGGGTCTGACACGTGCCTCTGGATCTCCACCAGGCCTGAGGAAGTCTCCAGGTGCTCAGGTAGGGAGGGGAAGCGTGAGCTCCCACACAGTCCGGTGGTCACAATGGTGGCCAGTGGCCGTTGGGGCCTGAGGCCAGGCGTGCTAGCCGGCTCTGTCTCAGGGTAGATGGACATGGTTTCATCGGAGGCCACAGTCAGGTGGATCCCGCTGGACAGTGAGTCTCGAGACTTGAGGTTGAACTTGTCTGAGTCCGGGtagtcagggct

Function

symbol description
dcaf7 Acts upstream of or within cartilage development and embryonic viscerocranium morphogenesis. Located in nucleus. Is expressed in forebrain; head; hindbrain; and somite. Orthologous to human DCAF7 (DDB1 and CUL4 associated factor 7).

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016880 False 1065 mRNA 0.58 8 33320144 33329563
TU20376 True 4697 lncRNA 0.41 2 33328797 33333746

Neighbor

gene id symbol gene type direction distance location
AMCG00016882 NA coding upstream 18231 33293053 ~ 33301913 (+)
AMCG00016883 NA coding upstream 27553 33256225 ~ 33292591 (+)
AMCG00016881 NA coding upstream 75661 33221534 ~ 33244483 (+)
AMCG00016886 NA coding upstream 98860 33207472 ~ 33221284 (+)
AMCG00016885 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 coding upstream 142212 33176271 ~ 33177932 (+)
AMCG00016890 NA coding downstream 190142 33523888 ~ 33548644 (+)
AMCG00016900 strada coding downstream 235666 33569412 ~ 33580105 (+)
AMCG00016903 NA coding downstream 246563 33580309 ~ 33597112 (+)
AMCG00016899 NA coding downstream 263416 33597162 ~ 33617484 (+)
AMCG00016896 NA coding downstream 285546 33619292 ~ 33624535 (+)
G16351 NA non-coding upstream 139705 33180239 ~ 33180439 (+)
G16350 NA non-coding upstream 140204 33179705 ~ 33179940 (+)
G16323 NA non-coding upstream 337814 32981779 ~ 32982330 (+)
G16290 NA non-coding upstream 461128 32857551 ~ 32859016 (+)
G16211 NA non-coding upstream 877559 32438254 ~ 32442585 (+)
G16512 NA non-coding downstream 317335 33651081 ~ 33651289 (+)
G16542 NA non-coding downstream 659436 33993182 ~ 33995382 (+)
G16552 NA non-coding downstream 770710 34104456 ~ 34105687 (+)
G16646 NA non-coding downstream 1264076 34597822 ~ 34599917 (+)
G16668 NA non-coding downstream 1402591 34736337 ~ 34736549 (+)
G16289 NA other upstream 462704 32856361 ~ 32857440 (+)
AMCG00016854 NA other upstream 816772 32499056 ~ 32503372 (+)
AMCG00016841 NA other upstream 1059517 32251808 ~ 32260627 (+)
AMCG00016830 NA other upstream 1569031 31728556 ~ 31751113 (+)
AMCG00016829 NA other upstream 1588698 31701669 ~ 31731446 (+)
AMCG00016898 NA other downstream 296266 33630012 ~ 33650080 (+)
AMCG00016901 NA other downstream 334847 33668593 ~ 33674361 (+)
G16546 NA other downstream 713625 34047371 ~ 34047720 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other downstream 759530 34093276 ~ 34099596 (+)
G16550 NA other downstream 766569 34100315 ~ 34100863 (+)

Expression


Co-expression Network