AMCG00016885 (fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035)


Basic Information

Item Value
gene id AMCG00016885
gene name fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33176271 ~ 33177932 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016885
ATGGGCGCACAGGGGACTCTCGCTTTGATCGCGCTGCTGCTCCCCTCCTGTCTGCGGGTCTCGGCGCAGCATCAGGGGGACAGCGGCATCGCAGTCCCGGATCACGGTTTCTGCCAGCCCATCTCCATCCCACTATGCACGGACATTGCCTACAACCAGACCATCATGCCCAATCTAGTAGGGCACTACAACCAGGAGGACGCGGGCTTGGAGGTGCATCAGTTTTACCCGCTGGTGAAAGTGCAGTGTTCTCCAGAGCTCAAGTTCTTCCTCTGCTCCATGTATGCCCCGGTGTGCACTGTGCTGGAGAAAGCCATCCCCCCGTGTCGGTCCATCTGCGAGCGGGCCAAGCAGGGCTGCGAGGCTCTCATGAACAAATTCGGCTTTCAGTGGCCGGAGAGGCTGCGCTGCGAGAACTTCCCGGTGCACGGCGGTGGGCCGATCTGCGTGGGCCAGAACGACTCGGAGACCGGGGTGCATGCAGTCACCACCCCGCCGGTGCGAGTACCAGCTGCGGGGACCCAAGGGATTCACGTGTATGCCTCCCCGGACAGGCCTTTCCGATGCCCCAAAGTGCTCCAGGTGCCTTCctacttgaattacaaattcCTGGGTGAGTCTGACTGTGCGGCGCCCTGCGAGCCTTCAAAAAGCTTCGGATACATGTTCTTCAGTGAAAGCGAGATCAGGTTCGCCCGGGTCTGGATCCTGATCTGGTCTTCCCTGTGCTGCGCCTCCACTCTGTTCACGGTGACCACCTACTTGGTGGACATGCAGCGCTTTAAATACCCCGAGCGGCCCATCATTTTCTTGTCGGGCTGCTACACCATGGTCTCCATCGCCTACATAGCGGGCTTCTTCCTGGATGACAAAGTGGTCTGCAACGAGCGCTTCGCACCGGAGAGCTACAAGACCGTGGTGCAGGGGACCAAGAAGGAGGGGTGCACGATCTTGTTTATgatgttgtattttttcagcATGGCCAGCTCCATTTGGTGGGTTATCCTCTCGCTGACTTGGTTCCTGGCGGCGGGGATGAAATGGGGACACGAAGCCATTGAGTCCAATTCGCAGTACTTCCACCTGGCCGCCTGGTCTGTGCCAGCTGTCAAAACCATCAGCATCCTCGCCATGGGCCAGATCGATGGCGACCTGCTGAGCGGCGTCTGCTTCGTCGGGCTCAACAACCTGGACCCCCTGCGTGGCTTCGTCCTGGCACCCCTGTTCGTCTACCTGTTCATCGGCACTTCTTTCTTGCTGGCCGGGTTTGTGTCTCTGTTCCGCATCCGCACTATAATGAAGCACGACGGCACTAAGACGGAGAAGCTGGAGCGGCTCATGGTGCGAATCGGGGTGTTCAGCGTGCTGTACACCGTGCCGGCCACCGTCGTCATCGCCTGCTTCTTCTACGAGCAGGCTTTCCGAGAGCACTGGGAGAGGAGCTGGATCAGCCACAACTGCAAGACCCTGGCCATCCCCTGCCCGATGCACTACACCCCGCGGATGACTCCGGATTTTACCGTCTACATGATCAAATATCTCATGACTCTGATTGTGGGGATCACCTCCGGGTTTTGGATCTGGTCTGGTAAGACTTTACAATCGTGGCGCAAGTTTTACACCAGACTCACCAACAGTAAGCAGGGGGAGACCACAGTCTGA

Function

symbol description
fzd2 Predicted to enable Wnt-activated receptor activity and Wnt-protein binding activity. Acts upstream of or within several processes, including Wnt signaling pathway, calcium modulating pathway; heart development; and sensory epithelium regeneration. Located in plasma membrane. Is expressed in several structures, including cardiovascular system; fin; head; head mesenchyme; and mesoderm. Human ortholog(s) of this gene implicated in omodysplasia 2. Orthologous to human FZD2 (frizzled class receptor 2).

NR:

description
PREDICTED: frizzled-2

GO: NA

KEGG:

id description
K02235 FZD2; frizzled 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016885 True 1662 mRNA 0.58 1 33176271 33177932

Neighbor

gene id symbol gene type direction distance location
AMCG00016874 NA coding upstream 24654 33148491 ~ 33151617 (+)
AMCG00016875 NA coding upstream 66704 33035302 ~ 33109567 (+)
AMCG00016873 NA coding upstream 154401 33012918 ~ 33021870 (+)
AMCG00016872 LOC101070426,LOC103367899,LOC104923905 coding upstream 186313 32986580 ~ 32989958 (+)
AMCG00016866 ace,LOC107598651 coding upstream 255044 32895759 ~ 32921227 (+)
AMCG00016886 NA coding downstream 29540 33207472 ~ 33221284 (+)
AMCG00016881 NA coding downstream 43602 33221534 ~ 33244483 (+)
AMCG00016883 NA coding downstream 78293 33256225 ~ 33292591 (+)
AMCG00016882 NA coding downstream 115121 33293053 ~ 33301913 (+)
AMCG00016890 NA coding downstream 345956 33523888 ~ 33548644 (+)
G16323 NA non-coding upstream 193941 32981779 ~ 32982330 (+)
G16290 NA non-coding upstream 317255 32857551 ~ 32859016 (+)
G16211 NA non-coding upstream 733686 32438254 ~ 32442585 (+)
G16169 NA non-coding upstream 913599 32261711 ~ 32262672 (+)
G16037 NA non-coding upstream 1420844 31755042 ~ 31755427 (+)
G16350 NA non-coding downstream 1773 33179705 ~ 33179940 (+)
G16351 NA non-coding downstream 2307 33180239 ~ 33180439 (+)
G16395 NA non-coding downstream 147162 33325094 ~ 33328342 (+)
G16512 NA non-coding downstream 473149 33651081 ~ 33651289 (+)
G16542 NA non-coding downstream 815250 33993182 ~ 33995382 (+)
G16289 NA other upstream 318831 32856361 ~ 32857440 (+)
AMCG00016854 NA other upstream 672899 32499056 ~ 32503372 (+)
AMCG00016841 NA other upstream 915644 32251808 ~ 32260627 (+)
AMCG00016830 NA other upstream 1425158 31728556 ~ 31751113 (+)
AMCG00016829 NA other upstream 1444825 31701669 ~ 31731446 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other downstream 142212 33320144 ~ 33333746 (+)
AMCG00016898 NA other downstream 452080 33630012 ~ 33650080 (+)
AMCG00016901 NA other downstream 490661 33668593 ~ 33674361 (+)
G16546 NA other downstream 869439 34047371 ~ 34047720 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other downstream 915344 34093276 ~ 34099596 (+)

Expression


Co-expression Network