AMCG00016888


Basic Information

Item Value
gene id AMCG00016888
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33333462 ~ 33348062 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016888
ATGaggaaaactaaacaaaaaagaaaggcattaacaaaaaggaaacagatgcgtgtgtatgtgtatgtggcATTGCAGTGCAGTCCTGTCTCTAATGTCCTGTCTCTGGGAGCTGATGTCCTCCCGGAGTACAAGCTTCAGGCCCCTCGGATCCACAAGTGGACCATCCTGCACTACAGCCCCTTCAAAGCGGTGTGGGACTGGCTGATCCTGCTGCTGGTCATCTACACGGCTGTGTTCACGCCCTACTCAGCTGCCTTCCTCCTGAACGAGCAGGAGGAGGAACGGCGGCGGCGCTGTGGCTATACCTGCAACCCCCTGAACGTGGTGGACCTCATCGTAGACATCATGTTCATCATCGACATCCTCATCAACTTCCGCACCACCTACGTCAACCACAACGACGAGGTGGTCAGCAACCCGGGCCGCATCGCCGTGCACTACTTCAAGGGCTGGTTTCTCATCGACATCGTGGCCGCCATCCCCTTCGACCTGCTCATCTTCAGGTCCGGCTCTGACGAGACCACCACTCTGATTGGCCTTCTGAAGACTGCCCGGCTGCTGCGATTGGTGCGCGTGGCACGGAAGCTGGACCGCTACTCGGAGTACGGGGCAGCGGTGCTGTTCCTGCTCATGTGCACCTTCGCCCTCATCGCACACTGGTTGGCCTGCATCTGGTACGCCATCGGCAACGTGGAGCGCCCCTTCATGGTGCACAAGATCGGCTGGCTGGACAATCTGGCTGACCAGATCGGCAAGCGTTACAACGACAGCGACTTGGCCTCGGGCCCCTCCATCAAGGACAAGTACGTGACGGCCCTTTACTTCACCTTCAGCAGTCTGACCAGTGTGGGCTTCGGCAATGTCTCGCCCAATACCAACTCTGAGAAGATCTTCTCCATCTGTGTCATGCTCATTGGCTCCCTGATGTATGCCAGCATCTTCGGCAACGTGTCGGCCATCATCCAGCGGCTGTACTCAGGCACGGCGCGCTATCATACGCAGATGCTTCGGGTCAAGGAGTTCATCCGCTTCCACCAGATCCCCAGTGGCCTGCGGCAACGCCTGGAGGAATACTTCCAGCACGCCTGGTCTTACACCAATGGCATCGACATGAATGCGGCTGACATCTGTTTGCACCTGAACCGTACCCTGCTGCAGAACTGCAAGGCCTTCCGGGGGGCCAGTAAGGGCTGCCTAAGGGCCCTGGCCATGCGCTTCAAGACCACCCATGCCCCCCCGGGAGACACCCTGGTGCATTATGGGGACGTGCTCACTGCCCTCTACTTCATCTCCAGGGGCTCCATTGAGATCCTGCGTGAGGATGTGGTGGTGGCCATTCTGGGGAAGAATGACACTTTTGGGGAGCCTCTCAGTCTGTACGCCCGACCAGGGAAGTCTAACTCGGATGTGCGTGCGCTGACCTACTGCGACCTGCACAAGATCCAACGCGAGGACCTGCTTGAGGTGCTGGACATGTACCCCGACTTCTCAGACAACTTCTGGAGCAACCTGGAGATCACCTTCAACCTGCGAGATGCAGATCGAATTATCAATCCCCTGCCCAGTGAAGACTCCGACTGCGGATACCGCCGGCCACGCCGCAGGAAAAACTCTCTTCACCGGCGCAACCGGCCCGATGGGATGGACAGAGAGGACTCATACCCAGACCAACCCTGCCCCGCCATGGTCAACCACCGGGGTGCGCCGCAGAGACCGCACTGGGACGAGCTGTGCAGCAGCCCCAGCCCCTGCTCCCAGTCCAGTGAGGATGAAATGAAGCCGCTGGGCCACAGCAAGGGCGAGTTGTACTCACCCAGCGGAGATGCCCGGGACTACACCCCTGCCGTGGTCAACCTCCTGCCCCCCAGTGGCAACACAGCCAGCATGGGAGGCCCGCTGGAGCGCGGACACCCCTACACAGCAGCCCCGCTCAACATGCCCGGACTTTATGGCTTCTGGCCCGACCGGCGGCCCAGCCAGTACTCCGAGAGCCCCCGCCGCTCCTCCTCCGTACGGGCCACCTTCCACCCCCCGCCCTGCACCGAGGACCGGCCCAGCGAGCTCGAGTCCCGTCTGGAACTCCTCCAGTCCCAGCTGAATAGATTGGAGACCCGGATGACGGCCGATATCAACGTGATCTTGCAGCTGCTGCAGAGACAGATAGCCCCGGTGCCCCCCGCCTACAGCGCCGTGTCGCCCAGCAGCCACCCCCCGGCCCTCTACAGCCCCGGAGCTCCGGTTTTGCACAGCATGGCGGCCATCTCCCCTGTGCAGATAGACAGCCTGGCCTCGCCCTTACAGagccctgactaCCCGGACTCAGACAAGTTCAACCTCAAGTCTCGAGACTCACTGTCCAGCGGGATCCACCTGACTGTGGCCTCCGATGAAACCATGTCCATCTACCCTGAGACAGAGCCGGCTAGCACGCCTGGCCTCAGGCCCCAACGGCCACTGGCCACCATTGTGACCACCGGACTGTGTGGGAGCTCACGCTTCCCCTCCCTACCTGAGCACCTGGAGACTTCCTCAGGCCTGGTGGAGATCCAGAGGCACGTGTCAGACCCCGTCCTGCCCGCCAGCTAG

Function

GO: NA

KEGG:

id description
K04909 KCNH6, KV11.2; potassium voltage-gated channel Eag-related subfamily H member 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016888 True 2589 mRNA 0.61 11 33333462 33348062

Neighbor

gene id symbol gene type direction distance location
AMCG00016884 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 coding downstream 14880 33307741 ~ 33318582 (-)
AMCG00016879 NA coding downstream 138206 33191702 ~ 33195256 (-)
AMCG00016877 pus3 coding downstream 161529 33168630 ~ 33171933 (-)
AMCG00016878 NA coding downstream 172503 33155283 ~ 33160959 (-)
AMCG00016876 dcakd,LOC107667188 coding downstream 185033 33141438 ~ 33148429 (-)
AMCG00016887 kcnh6a,LOC106601567,LOC105012970,LOC108427397,LOC106527280 coding upstream 33822 33381884 ~ 33390755 (-)
AMCG00016893 map3k3,LOC102777599 coding upstream 91490 33439552 ~ 33473811 (-)
AMCG00016894 NA coding upstream 125948 33474010 ~ 33479455 (-)
AMCG00016895 NA coding upstream 165565 33513627 ~ 33520074 (-)
AMCG00016892 ddx42 coding upstream 206039 33554101 ~ 33575296 (-)
G16422 NA non-coding downstream 5121 33325086 ~ 33328341 (-)
G16378 NA non-coding downstream 41213 33292031 ~ 33292249 (-)
G16377 NA non-coding downstream 49235 33284014 ~ 33284227 (-)
G16375 NA non-coding downstream 77080 33255653 ~ 33256382 (-)
G16325 NA non-coding downstream 348998 32984254 ~ 32984464 (-)
G16502 NA non-coding upstream 280038 33628100 ~ 33628919 (-)
G16505 NA non-coding upstream 286065 33634127 ~ 33634339 (-)
G16509 NA non-coding upstream 293136 33641198 ~ 33641979 (-)
G16510 NA non-coding upstream 294916 33642978 ~ 33643661 (-)
G16511 NA non-coding upstream 296147 33644209 ~ 33648440 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 154579 33176076 ~ 33178883 (-)
AMCG00016859 NA other downstream 826143 32497507 ~ 32507319 (-)
G16247 NA other downstream 910024 32423058 ~ 32423438 (-)
AMCG00016847 NA other downstream 1065494 32261549 ~ 32267968 (-)
AMCG00016815 NA other downstream 1945194 31380547 ~ 31388268 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 43727 33391789 ~ 33434651 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other upstream 140663 33488725 ~ 33513579 (-)
G16563 NA other upstream 758628 34106690 ~ 34107941 (-)
AMCG00016938 NA other upstream 2047930 35395992 ~ 35399030 (-)
G17032 NA other upstream 4410095 37758157 ~ 37758471 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_03315611_03353645 KCNH6, KCNH6A coding CI01000069 null 3315512 ~ 3353733 (-)