AMCG00016894


Basic Information

Item Value
gene id AMCG00016894
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33474010 ~ 33479455 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016894
CTGCGGGGCGGTAACTCGGTACGTACAGCCGTCAGTGGAGGAATGGCATCGCGGCGTACTGGGTAACTGCGACCAGTTGGAGACCTGCCCCCTAAGTGCTTTGCTTTTGGCAATGGCTGGGGCTTTGTGGGTCCCCAGAGGCCTGTGCTGGGTATACAGCAGGAGGCGGATAACGGGCATGCTATTGGACCCACTGTGCAGCTATGCCCCTCACTCACCCCTGCCCACTCTGCCCTCATTGTGCCAGCCTTGGGCCCCCCAGCCCAGCCGTGGGGTCCGTGTCAGCTCTGTGCTGTGGGCCGGACACAACAAGTGGTCCAAAGTGAAGAACATCAAGGGACCCAAAGATGCTGCCCGGAGTCGCATGTTCATGAAGCTGGCCATGATGATCAGGCTGGCTGTCAGAGAGGGAGGAGCGAACCCAGACTTCAATGTCCAGCTGGCTAATATAGTCGAGCAATGCAGGTCTAAGAACATGCCCAAGGCGTCCATCGAAACAGCCATCAAGGGAGCGGAAAAGTCCAAGGGCTCGGCCTATGTGCTGTATGAGAGCAGGGGCCCCGGCGGCTCTGCGCTGCTCATCGAGATCCTGACGGACAACAAAACACGCACCCACCAGGAGATCAAACACATCCTGAACAAGAATGGGGGGGTGCTGTGTGACGGGGCGCGGTACAATTTCGAGCACAAGGGTGTGGTGACGGCCGCAGGGGAGGACTTGGAGGGCCGGACTGTCTCCCTGGAGAGAGCGCTGGAGCTGGCCATTGAGTCAGGGGCTGAGGACGTGAGGGACACCCAGGACGAAGAGGAGAAGCCTTTGCTTCAGTTTATCTGTGATGTGTCCTCGCTGCGGAGTGTGAGAGAGGCTCTGGATTCCCTGGGGTTGAGGACTGTGTCGGGCGGCCAGGAGTTTGTGGCCTGCAATTCGGTGCAGCTCTCGGACTCGGATCTGGAGTCCGCATCACGCCTCCTGGAGGTGCTTAGTGACTGTCCTGACGTCATCCGTGTGTGGGACAACATCCAGGCTATGGACTAAACCTGTGACTGACTCTTTGCCTTCTGGCCAATgaagcagtgagagagagaagcagtAGGCTTCACAATCAATTGGCTTCGCTACAGAGATACTGTCTTGTTTCAAGCCAAGTCTTGAGCAACATCCTGTTGCATGtgaatttcttttctttttttgtatttaaagaggGATATATCTATTGCACCTCGGTGGCTCATCAGGTTAAAACTGTCCATTATTTGCGGtagagagaaaaacaagcatGGCTTCTGGGAGACATCAAGTTTGAGCACTTTGTTATTGTCCACTGGGTATATAGTGTTGCAAATTTCACAAAGTTCATGGATCCTCTTTTGTGCTCCAGCATACTTGTGAAAAAAAGCCAGTTGGTGTTTCTCTTGTTcaacacatttctgaaaagcTGTTGGTAATGTCCTTATCGATGTCAAGCCAATTAATTGCAGTTTTGATCATGAGGAGGTTATTATTCATGTTTGCCAAACTGGCTCCACAAGAAAAAGTGCCTTTTAGCAAAATGGCTCAATTTAAATTCAGAGTTCCTAGGGCGATTTAATAACTTTGCATGTTCCTCTAGGTGAGTAGCCCAGCAGGTTTAGGAAGTCTGTGTCAGGACTGGGAGATAAGGTTACCATGTAAATACTGAGTTCAATTAGGTAATAAGAGATCAGGTGGATCACAAACCAGTAGATGCGGCTGCCTTTTGAGGAGCAAATTGAAGAACCCTGTTGGAAGTCATCAGTCTCCTGGGGGATACCTCATCCTTGTCAGTTATCCTCAAATGATTTCAAATCcttaattcaaatttttaaactccaaaaatgtattgacaGGGTAGCAaaatagattgtttttcttttgttttgtttatcaggagggatattgtcaagttttacaTCTAGTATAATCATATAATAGTTCACGTAGTTAGATTACAAAATGGTGACCAGAATGAAGCTCGGTACTACCAATTGGGATTGTTTAGACCTAACCACGTATTATgtcagacttttatttttatttgactttaattaaatttgtgcATAAGCGCATCTGTTCTTGTGGTGCTGTGTtactgggattaaatcaaaatcacatGAACTAGTCCTAGTTTAGCCCTTATCCATTCTGGTTCAGATGAGTGTTACCCTGGGACATTCTCCAATACAGTGGATGCATCATGCAGGAAAACCCATGTatccactgaaatgaaaacttaGCATTTCATCACTGCTTGGGATACGTGGTCTGGGGACTGTctccagctgcagctgcagatgTTCACCTGATATTTCAAAACATGCCTTTGTACTCCACTGCATTTGCAATTGATACAGAGAACTGGAGAATAAATCATTGAAATACGAA

Function

GO: NA

KEGG:

id description
K18189 TACO1; translational activator of cytochrome c oxidase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016894 True 2401 mRNA 0.48 6 33474010 33479455

Neighbor

gene id symbol gene type direction distance location
AMCG00016893 map3k3,LOC102777599 coding downstream 199 33439552 ~ 33473811 (-)
AMCG00016887 kcnh6a,LOC106601567,LOC105012970,LOC108427397,LOC106527280 coding downstream 83255 33381884 ~ 33390755 (-)
AMCG00016888 NA coding downstream 125948 33333462 ~ 33348062 (-)
AMCG00016884 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 coding downstream 155428 33307741 ~ 33318582 (-)
AMCG00016879 NA coding downstream 278754 33191702 ~ 33195256 (-)
AMCG00016895 NA coding upstream 34172 33513627 ~ 33520074 (-)
AMCG00016892 ddx42 coding upstream 74646 33554101 ~ 33575296 (-)
AMCG00016904 LOC107583088 coding upstream 103269 33582724 ~ 33596242 (-)
AMCG00016907 nxph3,LOC105012985,LOC105898539,LOC107092790,LOC106601594 coding upstream 397648 33877103 ~ 33880678 (-)
AMCG00016908 NA coding upstream 521142 34000597 ~ 34008800 (-)
G16422 NA non-coding downstream 145669 33325086 ~ 33328341 (-)
G16378 NA non-coding downstream 181761 33292031 ~ 33292249 (-)
G16377 NA non-coding downstream 189783 33284014 ~ 33284227 (-)
G16375 NA non-coding downstream 217628 33255653 ~ 33256382 (-)
G16325 NA non-coding downstream 489546 32984254 ~ 32984464 (-)
G16502 NA non-coding upstream 148645 33628100 ~ 33628919 (-)
G16505 NA non-coding upstream 154672 33634127 ~ 33634339 (-)
G16509 NA non-coding upstream 161743 33641198 ~ 33641979 (-)
G16510 NA non-coding upstream 163523 33642978 ~ 33643661 (-)
G16511 NA non-coding upstream 164754 33644209 ~ 33648440 (-)
AMCG00016889 LOC107570748,LOC106906011 other downstream 39359 33391789 ~ 33434651 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 295127 33176076 ~ 33178883 (-)
AMCG00016859 NA other downstream 966691 32497507 ~ 32507319 (-)
G16247 NA other downstream 1050572 32423058 ~ 32423438 (-)
AMCG00016847 NA other downstream 1206042 32261549 ~ 32267968 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other upstream 9270 33488725 ~ 33513579 (-)
G16563 NA other upstream 627235 34106690 ~ 34107941 (-)
AMCG00016938 NA other upstream 1916537 35395992 ~ 35399030 (-)
G17032 NA other upstream 4278702 37758157 ~ 37758471 (-)
AMCG00016959 NA other upstream 4395795 37875250 ~ 38058939 (-)

Expression


Co-expression Network