AMCG00016896


Basic Information

Item Value
gene id AMCG00016896
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33619292 ~ 33624535 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016896
CTAAATTATAGCTGTAGCCTTAAGTGTTGTACACTACAGCTCTGCGTTAGCATACAACTCCCCCTGACACGACCTTTGTGTTTTGTATCctattgctttttgtttatatgaatcattattttccttttgaaatgtgCACATATTGGGATCTAAAGCTTACCGGcagacagtacagGGCTGTGCCAGGATGCTGTCTCGACCCCACAAGTCCAATCTGCTGTTTGCCTGTGGCTTTGTGCTGGGCTTCTGGCTGGCCTCCTTCACCATCACGGATCTCAGGCTGGAGCCGAGAGCCCAGTCTGCCCAAAAATGGCCAACACAGCACCACTTCCAACCCAGGACACCCAGTGTCAAAGCCCAGCACTCTTCCCTGTTTGCGCCTCAGAGCCGCCCCGCCTCCGCCCCCCCTGTGCGGGTGCTGTGCTGGGTGCTGACCTCTCCGGCCACCCTGTGGGTGAAAGCCCTGCACGTGCGCAACACCTGGGGCCGCTACTGCGACCGGCTGCTGTTCATGAGCTCAACCGCCGACCCCTCCTTCCCGGCTGTGGGACTGAACACCTCGGAGGGCCGGGGGGCACTGTACAACAAAACCATGGCGGCCTTCTCGCTCCTGCATGACCGCCACCTGCAGGAGGCTGACTGGTTCCTGAAGGCAGACGACGACACCTACGTAGTCATGCAGAACCTCCGACTCCTGCTCTCCCGCTACCCCCCCAACCGTCCTGTCTACCTGGGCCGCCGGTTCAAGCCCTTTGTCCAGCAAGGCTACATGAGCGGGGGCGCAGGCTACGTCCTGAACAGGGAGGCCCTCAAACGTTATGTACAGGGGCTCCGAGATGGCTCCTGCCCCCCGCTGACGGAGTTCGAGGACCTAGAAGTGGGCATCTGCATGGACAACCTGGGCATCCCAGCCAGAGACACTCGAGACCGCCTCCAACGGGAGACTTTCCACCCCTTGGCCCCAGATTTCATCATCCCCCCCTGGCTGAATTCCCCCAGCTGGTACAAAGAATACAGCTACTACCCAGTCAAGATGGGCCCAGACTGCTGCTCGGAAGCCTCCATCTCCTTCCACTATGTGACCCCCACAGTTATGTATGTGCTGGAGTACCTGACTTATCACTTGCGACCTGTGGGCTACAAAAGCCAGGAGGACGAGACTGTCTTTGAACAGCCACCTTAAATCAGTCTCCCACCCTATCACCCCCTGCTCTGCTGTCGTCAGCCACTTCAGGGCAACTAATCAGGCCAGCTGCATTAAACGCAAGTACTTCATCACATAGACATGATGAGCATATTAAGAGAACACTGTGTAGTagtggttaggactctggactcatgactggaaggttgtgggttcaagtCCCAGGTGGGACAGTGCTGTGGTCTTGCTGTACTTTTATACCCAAGGATCAGAGCACCTCCTGGACATGAGCGTGAGACATGacttttcttcctcctccttctcctgttACACGCCCACTTGTGACAGATGTCATCTTGGTAGATGTTGGGACTCTTTCCTTAACACCCTATGAATTCAGGtagtttctgtatatttatcATGCGCATCATTACATCCATTGAGTTAGTAATGAATTGAATTACCCATTAGAACCTCCAGTGGAATTGATTCCAGAAGAGTCTATTGTCTCTCCAGCATCTGGAGCCAATCTCTCTGATTTAACCAGAAACAGATGAGAATTGACTCAAGACATTTAACCAGAAAGACAAGACTAAACTGAATTTGTCTTCTTAATCAATGAatggcaaattaattaaattaacttattaatttaatcataaGGCAAAGTCATTGTTTCCCTTATAATAACTGATCATTTGGatgtggggaaaaataaacaaataaaaacacaaatgaaaaaatgtaggCCAATATCACAGATTTTATGTGCCCAATAAATTAagcctgaaaaataaaaagaccaaTACAGTATTATGTCGTGTCACTTGGTTGCAGTCCTCTGCCCTCTAGCGTGTCGCTACTGAACTGCATTTCTCTGTGTGCCAATGTAAGTGCTGAGCTTTTCTCCCTACATAAAGTTAACACTCGTGTTTAA

Function

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016896 True 2081 mRNA 0.50 4 33619292 33624535

Neighbor

gene id symbol gene type direction distance location
AMCG00016899 NA coding upstream 1808 33597162 ~ 33617484 (+)
AMCG00016903 NA coding upstream 22180 33580309 ~ 33597112 (+)
AMCG00016900 strada coding upstream 39187 33569412 ~ 33580105 (+)
AMCG00016890 NA coding upstream 70648 33523888 ~ 33548644 (+)
AMCG00016882 NA coding upstream 317379 33293053 ~ 33301913 (+)
AMCG00016902 NA coding downstream 1441 33625976 ~ 33628289 (+)
AMCG00016897 s35b1,slc35b1,LOC106601597,LOC107590797 coding downstream 28382 33652917 ~ 33662307 (+)
AMCG00016906 spop,LOC107754841 coding downstream 136883 33761418 ~ 33773533 (+)
AMCG00016905 spop coding downstream 166752 33791287 ~ 33801810 (+)
AMCG00016910 NA coding downstream 544953 34169488 ~ 34191749 (+)
G16395 NA non-coding upstream 290950 33325094 ~ 33328342 (+)
G16351 NA non-coding upstream 438853 33180239 ~ 33180439 (+)
G16350 NA non-coding upstream 439352 33179705 ~ 33179940 (+)
G16323 NA non-coding upstream 636962 32981779 ~ 32982330 (+)
G16290 NA non-coding upstream 760276 32857551 ~ 32859016 (+)
G16512 NA non-coding downstream 26546 33651081 ~ 33651289 (+)
G16542 NA non-coding downstream 368647 33993182 ~ 33995382 (+)
G16552 NA non-coding downstream 479921 34104456 ~ 34105687 (+)
G16646 NA non-coding downstream 973287 34597822 ~ 34599917 (+)
G16668 NA non-coding downstream 1111802 34736337 ~ 34736549 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other upstream 285546 33320144 ~ 33333746 (+)
G16289 NA other upstream 761852 32856361 ~ 32857440 (+)
AMCG00016854 NA other upstream 1115920 32499056 ~ 32503372 (+)
AMCG00016841 NA other upstream 1358665 32251808 ~ 32260627 (+)
AMCG00016830 NA other upstream 1868179 31728556 ~ 31751113 (+)
AMCG00016898 NA other downstream 5477 33630012 ~ 33650080 (+)
AMCG00016901 NA other downstream 44058 33668593 ~ 33674361 (+)
G16546 NA other downstream 422836 34047371 ~ 34047720 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other downstream 468741 34093276 ~ 34099596 (+)
G16550 NA other downstream 475780 34100315 ~ 34100863 (+)

Expression


Co-expression Network