AMCG00016897 (s35b1,slc35b1,LOC106601597,LOC107590797)


Basic Information

Item Value
gene id AMCG00016897
gene name s35b1,slc35b1,LOC106601597,LOC107590797
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33652917 ~ 33662307 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016897
ataagggcgtctgccaagaaataatagtagtagtagcctGCGTATAAAGGCGTCTGCTGAATATCTGTAGCCTACACTGCATGACCCCGTCTCTATAAaccttgattttatttgatacaCGCTTTGTGGGTAAATGCTCAGTTGAATTCCTGGAATAGAGGCTTTGGTCTAAAGGGATCACACAGTGGACGGTGAATTAACTTTAAAACTAGTGTTGCAGGCAACAGAAGCATAGACTGCAGTTACTCCGGGGAAGTCGATGATAGACTGCGTATCGAAACTGCTTGTTAAGTTAATTGCAGGCTCCAGTGCAAACGCACAAACAGCAGCGTCTGTTGTCTGCAAGGGAGAAAACCCTCCTCCGGGACGGCAGCTTTGCAGGCAGGTTAGCTGACGCCCCAGTATCTGCCAATGCAGTCGGCCGGGTCCTGACTCACAATGCTGACGCTGACGCCGACGCCGCCTGCAGACCCTATGAGAGCGGAGGACCCGCCGATCCCGGGAGCCGGAGTCTGTGACAGCGGACAGAGGGAGTCGCTTACCTGGACAGGGCAGTGGAATACACCGTTCACCAAGGAAGCCGAGAGCCGGGTCTTGACACGGGGAGAGGCGCAGGAAAGTCCACTCATTTGCTCCGCAGAGTCCCAGAGCAGGACGGGCGACGGGACCGAGTCGGGAGTTAGACCGAGGACTGCAGAGCGGGACCGGGGTCACACTGCACTCCTGCGCCCGCTGAGGGAGCAGGACACTCCAGCCCGACGCGCTCCGGACTCCGCTTCCGCACTCGGCCGTGTTTTAATCCCAGCCGGGGGGGGATTCGTGCGGGACTCTGACGGATACCCCGACCGGGACCCAGACACCCGGGTTTCTCCTCACTGGGGTCATACGAGCGCCACCATTTCGGGGCCAGTGCCGGCGGGCGGAGTGGAGTGGGACTCGGGGCTGAAGATTGCGGGGAGCGGGGCTGTGTCGGTGTCGATACCGGGGCTGGGGGACGGCATGGCGGCTGGTAAAGCGGGGAGCGCATCGCTTCTTCAGAATGAGCGCGTCCGGTTGATAGTCTGCTTTCTCGGAGTTTTTGTGTGTTACTTTTACTACGGTATACTGCAGGAGACCATAACAAGAGGGGAGTATGGCACCGAGGAAAAGAAGGAGAAGTTCAAGTATGCCACCACTCTAGTCTTCATTCAGTGTATCATCAATGCAATTTTTGCAAAAATACTCATCCAGATCTTTGAGAAGTCAAAGCCTGATCGCACTCGCAGCTGGCTGTATGGAGTGTGTTCGCTGTCCTATCTAGGTGCCATGGTGTCCAGTAACTCGGCGCTACAGTATGTCAACTACCCCACACAGGTCAGTGTTTTGGGCAAATCCTGCAAACCCATTCCAGTGATGATTCTGGGCGTCTGCATCCTCCGTAAGAAGTACCCTCTGGCCAAGTATCTGTGTGTGGTGCTGATAGTCTTGGGGGTGGCACTCTTCATGTACAAACCCAACAGGGGGGGATCTGAATCAGGGCAGCTCTTTGGCTTTGGGGAAATGTTGCTGCTGGTGTCCCTGACTCTGGACGGGCTGACCGGAGTGGCTCAGGACCACATGAGGGCGCACTCTCAGACTGGCTCCAACCAGATGATGCTCAATATCAACCTGTGGTCTACACTCATCCTTGGGCTTGgagtgCTGTGGACAGGAGAGGTATGGGAGTTCCTGAGTTTCGCTGACCGTTATCCTGGCGTCGTCTACAACATCCTGATCTTTGGTCTGACCAGTGCTCTGGGCCAGAGCTTCATCTTCATGACCGTGGTGTATTTCGGACCGCTCACCTGTTCCATCATCACCACCACACGCAAGTTCTTCACCATCCTGGGCTCTGTGCTCATCTTTGGCAATGCCATCAGCTCCATGCAGTGGGTGGGCACCATTCTGGTCTTCCTGGGTCTGGGAATGGACGCCAAGTTTGGAAAAGGGCCCAAGAAGACGACTCATTAGGAGGAACTGGAAAAACAGCAGGGCTTTGTCAGTGGGCTGGAGGAGAACAGGGCAgaggggtgggggcgggggcaCAATCCTGACTGCTTTCATCaacatctctaaatgatcagGGGCTGGGGgctgtgtgcatgcttggcacCCAGTAGGGAATTGGGCTTGTGCCTCACAATAAGCAAGAcctgaatataaatgtatattataattacatgtatattgtaAACGTCACTTAAAGTGGGTTTTCagtttgaataatttgaaatcCAAATTGCTCATCCTTGTTTTCAATCACTTTAATTGGATTGAACTGAGGAATGTTGTAAGTAGGTAGAAAATTGCATGTAAAGCTAGCAGTGATGTTGCCAGGTATAAACCCAGACCTAGTGTCTGCAATCAGAGGAGAAATTGACCCGTTTTAAGGAAATAAGTGATTTAAGAGCTTAGGTGAAAGGAAGCCCAGAAGCTGCTGCAGTGCCCCCCACCCAAGGGTCAGTGTTCTGTGCCCCCACTGTGACTGCTGCTGCCACCCTCCTCTGTGGAGTGGCGCTCACTCTAACTTGAAGAAGTCAAGTCAAGTCCAGACCTGGACCTCGCTCTCCTTCggacacccccccaccccaacactgCTCTCTGTCCAGAGTTGACAGCAGCACAGAGTTGtctgctttattatttaaaaaaattccaCACATTTCACAACTTGGAATGGCTATCTTTCTTTATCTGTAAGCAAATTTGCCAGTTTTAAATGTGGGTTTTCCCACCTGACTTTCAGAGCTAAATCTATTGTTTCCCAGCTTCCCAAGTTTCTTTTGGAATAGTTCACTGTCAATGCCAGTAAAGTGTGAAACCACTTCGGAAACTCCTAGCAGCAACTAGAGGAAGAGACCAAACATCAGTGAACAATGAAATCAAGAAAAATGCAGacaatggaaaatacaaattttaaagaTCTTTATCACTCCACCCCTATAAAACATATTGCATACATCTTTATCCATGTTTTTGGGTTTTCTTATCCATATGCAGATtccttttgaaaaatacagtGTGAGAGGTGGTCATTTGGGATGATtgaaaccccccaccccaatgtGTCCATCTCAAAGTTGTACAGTTTCAAGTAGTTTATACAACTGTATGTCAGATTTAATGTTTAtccttgtttctgcaattaaatgATGATAAGAGCTCTACCGGTGTATTTCAGCAAGGTTTCTGCTCTGTTTAATCTCAAACCTGTAAATCATTCCAATTCTGAACAGAAACCAGTACCAGCAAAGTAATGACATCTTtgttttcaactttttatttaaattgtattgtgtgGGGTGGTTATGATAAGATTCTGAAACTCTCCTGCACACACATCTCAGAGTTCAGGAGGTCAGTGTCCCCCTATTCACAGCATTAGCCTTGACGCACCGTGGATCCTCTGGGCTGGGTACTTCACTCATTCCTGGGTGTCATAAGTGActctccagcagcagcagttttaCCAGTCATTTACCACCTCAGTCTTTCCAAGTCGCTTTGGATCAAAGCATCTgctataatacaaattatgttttctttatggttatttgtttaattaatttaattgtctgaATACTATTCTGCAGGTTAATATAACTGAATTATGGCAAACTATACAAACAATGTAGTTTAcatcacaatattattttatctctggagttttattgcatgtttaaattgttttattttgtttgactgtatttttctttctggtttCCATAACTACTCttagttaaattatttttttttaaaagagagaaCGCAAAAAAGGGAAATCTATATTTTACACAAAAGGAAGGTGTTTCGTGTTCTTGTGCGTGTTCGGCCTTAAATGGCGATCTTGTCGTCTGCCAAGTGTATGAGATGTTACCAGCATCATGTACTAACGTGGGCCCAACCTGTGTGGGGTGAAGCCAAATTAAATGACATTGTggacaaatgtgtttgtgtgtgtgtcacttcCAGTTGtaactttcttttatttatgtatttatttagtggcACACATAGGCCTACACCAGGGAAACAACTAACTCACTGCCCCCGG

Function

symbol description
slc35b1 Predicted to enable UDP-galactose transmembrane transporter activity and UDP-glucose transmembrane transporter activity. Predicted to be involved in UDP-galactose transmembrane transport. Predicted to act upstream of or within carbohydrate transport and transmembrane transport. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane and integral component of endoplasmic reticulum membrane. Is expressed in hatching gland; notochord; and polster. Orthologous to human SLC35B1 (solute carrier family 35 member B1).

NR:

description
Solute carrier family 35 member B1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15275 SLC35B1; solute carrier family 35 (UDP-galactose transporter), member B1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016897 True 4072 mRNA 0.48 9 33652917 33662307

Neighbor

gene id symbol gene type direction distance location
AMCG00016902 NA coding upstream 24628 33625976 ~ 33628289 (+)
AMCG00016896 NA coding upstream 28382 33619292 ~ 33624535 (+)
AMCG00016899 NA coding upstream 35433 33597162 ~ 33617484 (+)
AMCG00016903 NA coding upstream 55805 33580309 ~ 33597112 (+)
AMCG00016900 strada coding upstream 72812 33569412 ~ 33580105 (+)
AMCG00016906 spop,LOC107754841 coding downstream 99111 33761418 ~ 33773533 (+)
AMCG00016905 spop coding downstream 128980 33791287 ~ 33801810 (+)
AMCG00016910 NA coding downstream 507181 34169488 ~ 34191749 (+)
AMCG00016913 ptrf,LOC103029568,LOC105905374,LOC105028466,LOC107742253,LOC107664665,LOC103381660 coding downstream 606691 34268998 ~ 34271418 (+)
AMCG00016914 ptrfb,LOC105935706,LOC102209316,LOC102787483,LOC101465061,LOC103482185,LOC103142478 coding downstream 631906 34294213 ~ 34296833 (+)
G16512 NA non-coding upstream 1628 33651081 ~ 33651289 (+)
G16395 NA non-coding upstream 324575 33325094 ~ 33328342 (+)
G16351 NA non-coding upstream 472478 33180239 ~ 33180439 (+)
G16350 NA non-coding upstream 472977 33179705 ~ 33179940 (+)
G16323 NA non-coding upstream 670587 32981779 ~ 32982330 (+)
G16542 NA non-coding downstream 330875 33993182 ~ 33995382 (+)
G16552 NA non-coding downstream 442149 34104456 ~ 34105687 (+)
G16646 NA non-coding downstream 935515 34597822 ~ 34599917 (+)
G16668 NA non-coding downstream 1074030 34736337 ~ 34736549 (+)
G16692 NA non-coding downstream 1113518 34775825 ~ 34777047 (+)
AMCG00016898 NA other upstream 2837 33630012 ~ 33650080 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other upstream 319171 33320144 ~ 33333746 (+)
G16289 NA other upstream 795477 32856361 ~ 32857440 (+)
AMCG00016854 NA other upstream 1149545 32499056 ~ 32503372 (+)
AMCG00016841 NA other upstream 1392290 32251808 ~ 32260627 (+)
AMCG00016901 NA other downstream 6286 33668593 ~ 33674361 (+)
G16546 NA other downstream 385064 34047371 ~ 34047720 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other downstream 430969 34093276 ~ 34099596 (+)
G16550 NA other downstream 438008 34100315 ~ 34100863 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other downstream 1496290 35158597 ~ 35204232 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location