AMCG00016901


Basic Information

Item Value
gene id AMCG00016901
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33668593 ~ 33674361 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016901
AAACAGGCACAGTAGACTCCTACTATCTATAAGGTGGGGTCCGAAAGTACAGTCTTTCAGAGCAGAAGTATCGAGGAGAGCAGTGTCTTTGAGAGGAGAGGCCTTTGGGTTTTACACTTCCTTTCGCACTTTTTgggagaaagaaaatcaaaagtCTCTTCAAAATGTTCCGCACGATCTTTGTGCACGCCAAAAAGCACCCCAGCTTGATCCCCCTGTTTGCATTCATCGGCGCTGGAGCTGCAGGGGCCACCTTGTACCTGGCACGACTGGCCCTCCGTAACCCTGATGTGAGCTGGGATCGCAAGAACAACCCCGAGCCCTGGAACAAACTGGGCCCCCAGGAGCAGTACAAGGCTTACTCTGTTCCTCTGCACCATACCTCTGCCTTGACCATCCGAAGGGTGCCTGCCTCTCGTCACTCTCAAGAT
>TU20517
GGGTCCGAAAGTACAGTCTTTCAGAGCAGAAGTATCGAGGAGAGCAGTGTCTTTGAGAGGAGAGGCCTTTGGGTTTTACACTTCCTTTCGCACTTTTTgggagaaagaaaatcaaaagtCTCTTCAAAATGTTCCGCACGATCTTTGTGCACGCCAAAAAGCACCCCAGCTTGATCCCCCTGTTTGCATTCATCGGCGCTGGAGCTGCAGGGGCCACCTTGTACCTGGCACGACTGGCCCTCCGTAACCCTGATGTGAGCTGGGATCGCAAGAACAACCCCGAGCCCTGGAACAAACTGGGCCCCCAGGAGCAGTACAAGTTCTTTGCTGTGAACATGGACTACAGTAAACTGAAGAAGAATGGGCCTGACTTCTAAGCCCGCCCTTCTCCGGCATTCTTGACCAAGGTCTTCAGAAGCCAATCCGCACAGACCACTCAACCCCCCACAACATCCAACCAAGACAGAAGCAAACCGCACAAAGAGTCCATCTATGTTCAACTTTTGTCCCTTTTGTCCCTTTTGTCCCCCAGCAAGGATGGATCTGTCAGTCTCTGAGTTCCACACAGAACTTTTAATCTTCATTCTGTCATTATTTATGGTTTGTctgcattaaacaaataaagcagcTACCACCTACTGGTTAAATGTGAAAAG

Function

GO:

id name namespace
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016901 False 431 mRNA 0.52 4 33668593 33674361
TU20517 True 656 TUCP 0.49 4 33668629 33672620

Neighbor

gene id symbol gene type direction distance location
AMCG00016897 s35b1,slc35b1,LOC106601597,LOC107590797 coding upstream 6286 33652917 ~ 33662307 (+)
AMCG00016902 NA coding upstream 40304 33625976 ~ 33628289 (+)
AMCG00016896 NA coding upstream 44058 33619292 ~ 33624535 (+)
AMCG00016899 NA coding upstream 51109 33597162 ~ 33617484 (+)
AMCG00016903 NA coding upstream 71481 33580309 ~ 33597112 (+)
AMCG00016906 spop,LOC107754841 coding downstream 87057 33761418 ~ 33773533 (+)
AMCG00016905 spop coding downstream 116926 33791287 ~ 33801810 (+)
AMCG00016910 NA coding downstream 495127 34169488 ~ 34191749 (+)
AMCG00016913 ptrf,LOC103029568,LOC105905374,LOC105028466,LOC107742253,LOC107664665,LOC103381660 coding downstream 594637 34268998 ~ 34271418 (+)
AMCG00016914 ptrfb,LOC105935706,LOC102209316,LOC102787483,LOC101465061,LOC103482185,LOC103142478 coding downstream 619852 34294213 ~ 34296833 (+)
G16512 NA non-coding upstream 17304 33651081 ~ 33651289 (+)
G16395 NA non-coding upstream 340251 33325094 ~ 33328342 (+)
G16351 NA non-coding upstream 488154 33180239 ~ 33180439 (+)
G16350 NA non-coding upstream 488653 33179705 ~ 33179940 (+)
G16323 NA non-coding upstream 686263 32981779 ~ 32982330 (+)
G16542 NA non-coding downstream 318821 33993182 ~ 33995382 (+)
G16552 NA non-coding downstream 430095 34104456 ~ 34105687 (+)
G16646 NA non-coding downstream 923461 34597822 ~ 34599917 (+)
G16668 NA non-coding downstream 1061976 34736337 ~ 34736549 (+)
G16692 NA non-coding downstream 1101464 34775825 ~ 34777047 (+)
AMCG00016898 NA other upstream 18513 33630012 ~ 33650080 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other upstream 334847 33320144 ~ 33333746 (+)
G16289 NA other upstream 811153 32856361 ~ 32857440 (+)
AMCG00016854 NA other upstream 1165221 32499056 ~ 32503372 (+)
AMCG00016841 NA other upstream 1407966 32251808 ~ 32260627 (+)
G16546 NA other downstream 373010 34047371 ~ 34047720 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other downstream 418915 34093276 ~ 34099596 (+)
G16550 NA other downstream 425954 34100315 ~ 34100863 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other downstream 1484236 35158597 ~ 35204232 (+)
G17193 NA other downstream 4821690 38496051 ~ 38503632 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location