AMCG00016904 (LOC107583088)


Basic Information

Item Value
gene id AMCG00016904
gene name LOC107583088
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33582724 ~ 33596242 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016904
atgGCGGATGAGACGCAAGGGTCTAAAGCGAcctgtacttttctttttaagaaaaccaacaaaaaattcAGTGCTCGGAAACGTAAAGCCAGCGACAGTGATAAAGGGAGTAACAGCGATGATGAAGGGAATACGAGCAAGAAGAcggagaaagagaaagtgtcTTCTAGTGACAGTGAGCCCGAAAACAAAGAAGAGAAAGTCACAGTATCTTACAAATCTACCAGATCTGCTAAGCCAGAAGGGCCAGAGGATATGGGCGCCACAGCAGTGTATGAGCTGGACACTGAGAAGGGGAAGGACGCCCAGGCCATCTTCGAGCGCAGCCAGAAGATCCAAGAGGAACTGGTGGGGAAAGAGGATGACAAAATCTACCGGGGGATCAATAACTACCAGAAGTTCATCAAACCAAAGGACACGTCGATGGGCAATGCTTCTTCTGGCATGGTCAGAGCCCCAGAGCACCTGAGGGCCACAGTGCGGTGGGATTACCAACCCGACATCTGCAAGGACTACAAAGAGACTGGCTTCTGTGGCTTCGGGGACAGCTGCAAGTTCTCTCACGACCGATCGGACTACAAACACGGCTGGCAGATCGAGAGGGAACTGGAAGAGGGACGATATGGGGCGAACGATGATGAGAACTACGAGGTGAGCAGCGATGAGGAAGACCTTCCTTTCAAGTGCTTCATCTGCAGGGACTCCTTCAAGAACCCCATCATCACCAAGTGCCGGCACTATTTCTGTGAAGCCTGCGCTCTACAGCATTATCGGAAGTCCAAGCGTTGCTATGTGTGCAACCAGCAGACCAATGGGAGCTGATTGCCAAGATACAGAAACACCAGGCACAGGAGGCACAGGAGGCACAGGAGGCAGCCCACACCCACTCTTCTGATGAAGATTAACAACAATACATCCTTTGTAAATttataccttttgtttttttcttttctccccccgcccccgccTTTTTGGTTTTGGTAACTGTTTAGGATGTATTGTGCAGTCATAGTTTGACTTGTTTTGGAATAAAGTGTActgtttttataaatgaagCAGCCTTGTTAGGATTACA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: RING finger protein 113A-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13127 RNF113A, CWC24; RING finger protein 113A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016904 True 1075 mRNA 0.49 10 33582724 33596242

Neighbor

gene id symbol gene type direction distance location
AMCG00016892 ddx42 coding downstream 7428 33554101 ~ 33575296 (-)
AMCG00016895 NA coding downstream 62650 33513627 ~ 33520074 (-)
AMCG00016894 NA coding downstream 103269 33474010 ~ 33479455 (-)
AMCG00016893 map3k3,LOC102777599 coding downstream 108913 33439552 ~ 33473811 (-)
AMCG00016887 kcnh6a,LOC106601567,LOC105012970,LOC108427397,LOC106527280 coding downstream 191969 33381884 ~ 33390755 (-)
AMCG00016907 nxph3,LOC105012985,LOC105898539,LOC107092790,LOC106601594 coding upstream 280861 33877103 ~ 33880678 (-)
AMCG00016908 NA coding upstream 404355 34000597 ~ 34008800 (-)
AMCG00016911 LOC105028465,LOC108426558,LOC107655803,LOC107557242 coding upstream 618657 34214899 ~ 34263010 (-)
AMCG00016931 NA coding upstream 1495211 35091453 ~ 35096502 (-)
AMCG00016936 NA coding upstream 1639350 35235592 ~ 35245651 (-)
G16422 NA non-coding downstream 254383 33325086 ~ 33328341 (-)
G16378 NA non-coding downstream 290475 33292031 ~ 33292249 (-)
G16377 NA non-coding downstream 298497 33284014 ~ 33284227 (-)
G16375 NA non-coding downstream 326342 33255653 ~ 33256382 (-)
G16325 NA non-coding downstream 598260 32984254 ~ 32984464 (-)
G16502 NA non-coding upstream 31858 33628100 ~ 33628919 (-)
G16505 NA non-coding upstream 37885 33634127 ~ 33634339 (-)
G16509 NA non-coding upstream 44956 33641198 ~ 33641979 (-)
G16510 NA non-coding upstream 46736 33642978 ~ 33643661 (-)
G16511 NA non-coding upstream 47967 33644209 ~ 33648440 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 69145 33488725 ~ 33513579 (-)
AMCG00016889 LOC107570748,LOC106906011 other downstream 148073 33391789 ~ 33434651 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 403841 33176076 ~ 33178883 (-)
AMCG00016859 NA other downstream 1075405 32497507 ~ 32507319 (-)
G16247 NA other downstream 1159286 32423058 ~ 32423438 (-)
G16563 NA other upstream 510448 34106690 ~ 34107941 (-)
AMCG00016938 NA other upstream 1799750 35395992 ~ 35399030 (-)
G17032 NA other upstream 4161915 37758157 ~ 37758471 (-)
AMCG00016959 NA other upstream 4279008 37875250 ~ 38058939 (-)
G17421 NA other upstream 7620409 41216651 ~ 41217231 (-)

Expression


Co-expression Network