AMCG00016909 (mien1,LOC107566883,LOC107755209)


Basic Information

Item Value
gene id AMCG00016909
gene name mien1,LOC107566883,LOC107755209
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34093276 ~ 34099596 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016909
AGCGGGTTTGCACGGCAGAGAGAAGAGACGAGCATGGGCGTGCAAGTGCGGGTTGAATACTGTGGCTCATGAGGCTATGAGCCCCGCTATCAGGAGCTGGCGCAGGTGGTGTCTGCGGAGTTCACTGATGCGGAGGTGTCCGGCTTCGTTGGCAGAGCAGGCAGCTTTGAAATTGAGATCAATGGACAGCTGGTGTTCTCCAAGCTGGAAACCAGTGGCTTTCCTTATGAGGATGACATCATGAATGCCGTTCAGAAAGCCCATGACGGGGAGATGGTAGAAAAGATCACCAACAGCCGTCCCCCCTGTGTCATCCTGTAACCTGGGCAGCAGTGTCAGGTGTCAGCCCCACCTCCCTCCTCATGAAGAACAGAAGTACCTCTGAGCACCTCCAAGCATCCACAGCACCAGCACTTGGACAGAATTGGGGGGGAAAGAATGACAGAAAGATGCAGAGTCTCATGCACACTGCAAAGAAAACTTGTTCAAAAGgcaaaaataatttgattagatttaaatagttttcagtTGAAAGATTGATGCACAGTCTTTTTCATCAAAAGGTTTATTGCAATGGTAATTTGATGCAttacaacaaaatgtacttttaggATTGGTTCACAACTACATAATTGGCACTGAATTTTACCTTCGCAAAAGTGATATACAGCTTACAGTTCAGTGTCTCTGTAATCAGCCCTGATGGACAAGCACTGCAGCGTCACTGTAAACCCACCAGTTAGAAATCTGAAAATGGATTAAAAACAGAGAgccattttaaattagatataaaGTGATTGGACTATTTTTCAACTTTAACATTCAGTATCTGCAACTATAGAGAAAGCAGCAACTGTGTGGTGAGTTCATGATCTTGGCTATTCTCATGCACCTCTGAAGCTGCATAATGGCAATAACCAGCCAGCTAGAGGATACATTTGAACAGAAGATAGAGAAGAATGGCCAGGAAACCAGAGTGAGGACATTGCATCTACCATGCAGTGCTGTAGTGAGGCTTAGGTGttgtctgtttgattgtttcctcAGGTCATTGTGTTGATAAATACATTGTTGCTTGTGCTGGAGGTTTCACTGCCTCTCCCTGGTCTGCATCTTTTGAGGGGGGTCAGGTCCTTTATGATTActttaactgaaatgtgaaGGTTAAGGTTTGAGCTAGCCGGCCCTGACCCCCACATCAAGAGGACAGCACTTGGAGAGGTCAGAGGTGTGTGGAGGGGGACTCTTTCTCAACCCACTCCCAGCCTGGGGACACTGAAACACTGCTCAGTGAGTTTGTTATGAGTGGTGAACTCCAACCCTCTCCCTAGGTCTAGGTCCCTCAGCCCTGGCAGTGAATACAAGTAGATTTGGAGTTGAGGATAGGAAAGAATAAGTGGAGTACAGACACTGTTTTGTAACTGCATGATTATGACTTCAGTGTAAATGTCTGACCCAAGTGGACTGAATAAGATGTGTAAGTGTACTAATATATGTTTCCTGatttattcataaatatgcAGTGTCTGTTCTGTTTATTAGGAGCAAAACAGCTTGATAAAACATACATAGGAATTTCTGTTTCTGAAAGTATCAGACTGACTAGTGTCTCTTCATAATATAGTGGACAATGCTCACAGCGATCACAGTTATATGGATCAACCGCCTATATGGATCAAAACGCTTGGGACAGAATCGTTCCTATACAAATGCTGGTTTAAATAATTCGCTTATAATGTTCATTTTGggtcttttcatacatttcaacatatggagaaaaataaataaactgatggATGTGATCGCAATAAGCGGTCGCCACTACTAAATAAAGTCTAAACATAGATTAGTCTTAATTTGATAGCTAGAATAATCTCATGCAAGTTAGTAAAAAGTGAACTTGGTTTTGGATAAAACCCATGATCCAGGCATCAATGGACAAGTTTGTGAAATGACTTTTCCAGGCGGCACAGAGCCAACACACAATACAGAGGTAGCCTCATTTTGTTGTAGGCTAGTTATTGTTatgcagtttttatattttgactaAGATCAGAATATTTTAGGATTACGTTTGTTCTCAAACTCTGCTACCATTGGCATAGATAGCCTACagtttattcatttgaaatgcactgaaaccACCGGCAAGCTGTGGTTTATGGCCTAGCCTATTAACAAGGTAATCagtgaaatcaatcaattaataaactCGTGCTGAACCAAAAAGTCATAAGTGTATAGATCACAAAATCACGtgtcaaaaataaagaaaatcaaacaaacgtgttagatatgtgtatataaaacaaatacgcgtaataaatataaagccaaaaacaatcaataaaaccaaGCTGATTAAGTATCAATGTCCCACAGGTGACATGATCAAGCGCATGAAAGCGCATATAAAGGAATCTCATTGTCAATAAAAGCGGATGTTGTTGATA
>TU20553
GCCTGCGTGTGTTTCCTCACCGAGACAGCGGGTTTGCACGGCAGAGAGAAGAGACGAGCATGGGCGTGCAAGTGCGGGTTGAATACTGTGGCTCATGAGGCTATGAGCCCCGCTATCAGGAGCTGGCGCAGGTGGTGTCTGCGGAGTTCACTGATGCGGAGGTGTCCGGCTTCGTTGGCAGAGCAGCTTTGAAATTGAGATCAATGGACAGCTGGTGTTCTCCAAGCTGGAAACCAGTGGCTTTCCTTATGAGGATGACATCATGAATGCCGTTCAGAAAGCCCATGACGGGGAGATGGTAGAAAAGATCACCAACAGCCGTCCCCCCTGTGTCATCCTGTAACCTGGGCAGCAGTGTCAGGTGTCAGCCCCACCTCCCTCCTCATGAAGAACAGAAGTACCTCTGAGCACCTCCAAGCATCCACAGCACCAGCACTTGGACAGAATTGGGGGGGAAAGAATGACAGAAAGATGCAGAGTCTCATGCACACTGCAAAGAAAACTTGTTCAAAAGgcaaaaataatttgattagatttaaatagttttcagtTGAAAGATTGATGCACAGTCTTTTTCATCAAAAGGTTTATTGCAATGGTAATTTGATGCAttacaacaaaatgtacttttaggATTGGTTCACAACTACATAATTGGCACTGAATTTTACCTTCGCAAAAGTGATATACAGCTTACAGTTCAGTGTCTCTGTAATCAGCCCTGATGGACAAGCACTGCAGCGTCACTGTAAACCCACCAGTTAGAAATCTGAAAATGGATTAAAAACAGAGAgccattttaaattagatataaaGTGATTGGACTATTTTTCAACTTTAACATTCAGTATCTGCAACTATAGAGAAAGCAGCAACTGTGTGGTGAGTTCATGATCTTGGCTATTCTCATGCACCTCTGAAGCTGCATAATGGCAATAACCAGCCAGCTAGAGGATACATTTGAACAGAAGATAGAGAAGAATGGCCAGGAAACCAGAGTGAGGACATTGCATCTACCATGCAGTGCTGTAGTGAGGCTTAGGTGttgtctgtttgattgtttcctcAGGTCATTGTGTTGATAAATACATTGTTGCTTGTGCTGGAGGTTTCACTGCCTCTCCCTGGTCTGCATCTTTTGAGGGGGGTCAGGTCCTTTATGATTActttaactgaaatgtgaaGGTTAAGGTTTGAGCTAGCCGGCCCTGACCCCCACATCAAGAGGACAGCACTTGGAGAGGTCAGAGGTGTGTGGAGGGGGACTCTTTCTCAACCCACTCCCAGCCTGGGGACACTGAAACACTGCTCAGTGAGTTTGTTATGAGTGGTGAACTCCAACCCTCTCCCTAGGTCTAGGTCCCTCAGCCCTGGCAGTGAATACAAGTAGATTTGGAGTTGAGGATAGGAAAGAATAAGTGGAGTACAGACACTGTTTTGTAACTGCATGATTATGACTTCAGTGTAAATGTCTGACCCAAGTGGACTGAATAAGATGTGTAAGTGTACTAATATATGTTTCCTGatttattcataaatatgcAGTGTCTGTTCTGTTTATTAGGAGCAAAACAGCTTGATAAAACATACATAGGAATTTCTGTTTCTGAAAGTATCAGACTGACTAGTGTCTCTTCATAATATAGTGGACAATGCTCACAGCGATCACAGTTATATGGATCAACCGCCTATATGGATCAAAACGCTTGGGACAGAATCGTTCCTATACAAATGCTGGTTTAAATAATTCGCTTATAATGTTCATTTTGggtcttttcatacatttcaacatatggagaaaaataaataaactgatggATGTGATCGCAATAAGCGGTCGCCACTACTAAATAAAGTCTAAACATAGATTAGTCTTAATTTGATAGCTAGAATAATCTCATGCAAGTTAGTAAAAAGTGAACTTGGTTTTGGATAAAACCCATGATCCAGGCATCAATGGACAAGTTTGTGAAATGACTTTTCCAGGCGGCACAGAGCCAACACACAATACAGAGGTAGCCTCATTTTGTTGTAGGCTAGTTATTGTTatgcagtttttatattttgactaAGATCAGAATATTTTAGGATTACGTTTGTTCTCAAACTCTGCTACCATTGGCATAGATAGCCTACagtttattcatttgaaatgcactgaaaccACCGGCAAGCTGTGGTTTATGGCCTAGCCTATTAACAAGGTAATCagtgaaatcaatcaattaataaactCGTGCTGAACCAAAAAGTCATAAGTGTATAGATCACAAAATCACGtgtcaaaaataaagaaaatcaaacaaacgtgttagatatgtgtatataaaacaaatacgcgtaataaatataaagccaaaaacaatcaataaaaccaaGCTGATTAAGTATCAATGTCCCACAGGTGACATGATCAAGCGCATGAAAGCGCATATAAAGGAATCTCATTGTCAATAAAAGCGGATGTTGTTGATATGGGactcttttattt
>TU20554
GCCTGCGTGTGTTTCCTCACCGAGACAGCGGGTTTGCACGGCAGAGAGAAGAGACGAGCATGGGCGTGCAAGTGCGGGTTGAATACTGTGGCTCATGAGGCTATGAGCCCCGCTATCAGGAGCTGGCGCAGGTGGTGTCTGCGGAGTTCACTGATGCGGAGGTGTCCGGCTTCGTTGGCAGAGCAGCTTTGAAATTGAGATCAATGGACAGCTGGTGTTCTCCAAGCTGGAAACCAGTGGCTTTCCTTATGAGGATGACATCATGAATGCCGTTCAGAAAGCCCATGACGGGGAGATGGTAGAAAAGATCACCAACAGCCGTCCCCCCTGTGTCATCCTGTAACCTGGGCAGCAGTGTCAGGTGTCAGCCCCACCTCCCTCCTCATGAAGAACAGAAGTACCTCTGAGCACCTCCAAGCATCCACAGCACCAGCACTTGGACAGAATTGGGGGGGAAAGAATGACAGAAAGATGCAGAGTCTCATGCACACTGCAAAGAAAACTTGTTCAAAAGgcaaaaataatttgattagatttaaatagttttcagtTGAAAGATTGATGCACAGTCTTTTTCATCAAAAGGTTTATTGCAATGGTAATTTGATGCAttacaacaaaatgtacttttaggATTGGTTCACAACTACATAATTGGCACTGAATTTTACCTTCGCAAAAGTGATATACAGCTTACAGTTCAGTGTCTCTGTAATCAGCCCTGATGGACAAGCACTGCAGCGTCACTGTAAACCCACCAGTTAGAAATCTGAAAATGGATTAAAAACAGAGAgccattttaaattagatataaaGTGATTGGACTATTTTTCAACTTTAACATTCAGTATCTGCAACTATAGAGAAAGCAGCAACTGTGTGGTGAGTTCATGATCTTGGCTATTCTCATGCACCTCTGAAGCTGCATAATGGCAATAACCAGCCAGCTAGAGGATACATTTGAACAGAAGATAGAGAAGAATGGCCAGGAAACCAGAGTGAGGACATTGCATCTACCATGCAGTGCTGTAGTGAGGCTTAGGTGttgtctgtttgattgtttcctcAGGTCATTGTGTTGATAAATACATTGTTGCTTGTGCTGGAGGTTTCACTGCCTCTCCCTGGTCTGCATCTTTTGAGGGGGGTCAGGTCCTTTATGATTActttaactgaaatgtgaaGGTTAAGGTTTGAGCTAGCCGGCCCTGACCCCCACATCAAGAGGACAGCACTTGGAGAGGTCAGAGGTGTGTGGAGGGGGACTCTTTCTCAACCCACTCCCAGCCTGGGGACACTGAAACACTGCTCAGTGAGTTTGTTATGAGTGGTGAACTCCAACCCTCTCCCTAGGTCTAGGTCCCTCAGCCCTGGCAGTGAATACAAGTAGATTTGGAGTTGAGGATAGGAAAGAATAAGTGGAGTACAGACACTGTTTTGTAACTGCATGATTATGACTTCAGTGTAAATGTCTGACCCAAGTGGACTGAATAAGATGTGTAAGTGTACTAATATATGTTTCCTGatttattcataaatatgcAGTGTCTGTTCTGTTTATTAGGAGCAAAACAGCTTGATAAAACATACATAGGAATTTCTGTTTCTGAAAGTATCAGACTGACTAGTGTCTCTTCATAATATAGTGGACAATGCTCACAGCGATCACAGTTATATGGATCAACCGCCTATATGGATCAAAACGCTTGGGACAGAATCGTTCCTATACAAATGCTGGTTTAAATAATTCGCTTATAATGTTCATTTTGggtcttttcatacatttcaacatatggagaaaaataaataaactgatggATGTGATCGCAATAAGCGGTCGCCACTACTAAATAAAGTCTAAACATAGATTAGTCTTAATTTGATAGCTAGAATAATCTCATGCAAGTTAGTAAAAAGTGAACTTGGTTTTGGATAAAACCCATGATCCAGGCATCAATGGACAAGTTTGTGAAATGACTTTTCCAGGCGGCACAGAGCCAACACACAATACAGAGGTAGCCTCATTTTGTTGTAGGCTAGTTATTGTTatgcagtttttatattttgactaAGATCAGAATATTTTAGGATTACGTTTGTTCTCAAACTCTGCTACCATTGGCATAGATAGCCTACagtttattcatttgaaatgcactgaaaccACCGGCAAGCTGTGGTTTATGGCCTAGCCTATTAACAAGGTAATCagtgaaatcaatcaattaataaactCGTGCTGAACCAAAAAGTCATAAGTGTATAGATCACAAAATCACGtgtcaaaaataaagaaaatcaaacaaacgtgttagatatgtgtatataaaacaaatacNN

Function

symbol description
mien1 Involved in negative regulation of apoptotic process; positive regulation of cell migration; and positive regulation of filopodium assembly. Located in several cellular components, including centriolar satellite; cytosol; and nucleoplasm. Is intrinsic component of the cytoplasmic side of the plasma membrane.

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0008430 selenium binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016909 False 2453 mRNA 0.41 5 34093302 34099580
TU20553 True 2491 lncRNA 0.41 5 34093276 34099596
TU20554 False 2340 lncRNA 0.42 4 34093276 34098392

Neighbor

gene id symbol gene type direction distance location
AMCG00016905 spop coding upstream 291466 33791287 ~ 33801810 (+)
AMCG00016906 spop,LOC107754841 coding upstream 319743 33761418 ~ 33773533 (+)
AMCG00016897 s35b1,slc35b1,LOC106601597,LOC107590797 coding upstream 430969 33652917 ~ 33662307 (+)
AMCG00016902 NA coding upstream 464987 33625976 ~ 33628289 (+)
AMCG00016896 NA coding upstream 468741 33619292 ~ 33624535 (+)
AMCG00016910 NA coding downstream 69892 34169488 ~ 34191749 (+)
AMCG00016913 ptrf,LOC103029568,LOC105905374,LOC105028466,LOC107742253,LOC107664665,LOC103381660 coding downstream 169402 34268998 ~ 34271418 (+)
AMCG00016914 ptrfb,LOC105935706,LOC102209316,LOC102787483,LOC101465061,LOC103482185,LOC103142478 coding downstream 194617 34294213 ~ 34296833 (+)
AMCG00016912 stat3,LOC107653351 coding downstream 211272 34310868 ~ 34340346 (+)
AMCG00016916 NA coding downstream 260631 34360227 ~ 34435938 (+)
G16542 NA non-coding upstream 97894 33993182 ~ 33995382 (+)
G16512 NA non-coding upstream 441987 33651081 ~ 33651289 (+)
G16395 NA non-coding upstream 764934 33325094 ~ 33328342 (+)
G16351 NA non-coding upstream 912837 33180239 ~ 33180439 (+)
G16350 NA non-coding upstream 913336 33179705 ~ 33179940 (+)
G16552 NA non-coding downstream 4860 34104456 ~ 34105687 (+)
G16646 NA non-coding downstream 498226 34597822 ~ 34599917 (+)
G16668 NA non-coding downstream 636741 34736337 ~ 34736549 (+)
G16692 NA non-coding downstream 676229 34775825 ~ 34777047 (+)
G16698 NA non-coding downstream 721601 34821197 ~ 34821413 (+)
G16546 NA other upstream 45556 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 418915 33668593 ~ 33674361 (+)
AMCG00016898 NA other upstream 443196 33630012 ~ 33650080 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other upstream 759530 33320144 ~ 33333746 (+)
G16289 NA other upstream 1235836 32856361 ~ 32857440 (+)
G16550 NA other downstream 719 34100315 ~ 34100863 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other downstream 1059001 35158597 ~ 35204232 (+)
G17193 NA other downstream 4396455 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 5139477 39239073 ~ 39254490 (+)
G17697 NA other downstream 8291701 42391297 ~ 42397787 (+)

Expression


Co-expression Network