AMCG00016914 (ptrfb,LOC105935706,LOC102209316,LOC102787483,LOC101465061,LOC103482185,LOC103142478)


Basic Information

Item Value
gene id AMCG00016914
gene name ptrfb,LOC105935706,LOC102209316,LOC102787483,LOC101465061,LOC103482185,LOC103142478
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34294213 ~ 34296833 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016914
ATGGCTGGATTGGGCCAACAGCTGCTGAAGCTGTTGAAGGAGATCTTTACAGTTGACTCTCTGAGACCCTGCCTGTGTATTCCTTCTGGTTGCCAGTCCACTACTGTACATGGTCACGGGTGTCCACAAGAGGGCACCCTTTACTTACCAAACCTGgagctggagagggtgccagaggaaggggaggagggggaagtGCAGGCGAAAGAGGGGGCGGAAGAGGAGGGGGGCGAGGGCAGCCACCTGGCGCTGTCCTCCGATGAAGAGGTAGAGATTGAGGAGATCATCGAGGAGTCCCGGGCCGAGCGCATAAAGCGGAGCAGCATGAGGAGGGTGGATGACATCAAGAAGGCCTTCTCCAAGGAGAAGATGGAGAAGACCAAGCAGAAGACCAAGGAGAACCTGGAGAAGACCCGGCAAAAGACTAAGGAAAACCTGGAGAAGACCAAGCACAACCTGGAGAAGAAGATGAACAAGCTGGGCACTCGAATCGTCAACACGGAGCGCAAGGAAAAAATGAAGACCTCCAGAGAGAAGCTGAAGAAGTCCTTCACCCCTGACCATGCCGTCTACGCCCGCTCCAAGACCGCTGTCTACAAGGTGCCCCCCTTCACCTTCCACGTCAAGAAGATCCGAGACGGCGAGGTGGAAGTCCAGGGCACCGAGATGGTGGAGGTGGCCGGGGAAGAGGAAGGTGAGACGGATGACCTCCTGCACGAAGACGCTGAGATGCAGACGTTCCTGGAAATGACCGAAGACTCCGAGCTGGTCCTGGTGGAGAAGAGCAGAATCCGAGAAGACAGCGATTAG

Function

NR:

description
polymerase I and transcript release factor

GO:

id name namespace
GO:0030903 notochord development biological_process

KEGG:

id description
K19387 PTRF; polymerase I and transcript release factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016914 True 810 mRNA 0.56 3 34294213 34296833

Neighbor

gene id symbol gene type direction distance location
AMCG00016913 ptrf,LOC103029568,LOC105905374,LOC105028466,LOC107742253,LOC107664665,LOC103381660 coding upstream 22795 34268998 ~ 34271418 (+)
AMCG00016910 NA coding upstream 102464 34169488 ~ 34191749 (+)
AMCG00016905 spop coding upstream 492403 33791287 ~ 33801810 (+)
AMCG00016906 spop,LOC107754841 coding upstream 520680 33761418 ~ 33773533 (+)
AMCG00016897 s35b1,slc35b1,LOC106601597,LOC107590797 coding upstream 631906 33652917 ~ 33662307 (+)
AMCG00016912 stat3,LOC107653351 coding downstream 14035 34310868 ~ 34340346 (+)
AMCG00016916 NA coding downstream 63394 34360227 ~ 34435938 (+)
AMCG00016915 LOC105013349,LOC103368144,LOC102309899 coding downstream 147568 34444401 ~ 34472634 (+)
AMCG00016917 NA coding downstream 184300 34481133 ~ 34499652 (+)
AMCG00016918 LOC106601024,LOC106607294,LOC103359488 coding downstream 261706 34558539 ~ 34597579 (+)
G16552 NA non-coding upstream 188526 34104456 ~ 34105687 (+)
G16542 NA non-coding upstream 298831 33993182 ~ 33995382 (+)
G16512 NA non-coding upstream 642924 33651081 ~ 33651289 (+)
G16395 NA non-coding upstream 965871 33325094 ~ 33328342 (+)
G16351 NA non-coding upstream 1113774 33180239 ~ 33180439 (+)
G16646 NA non-coding downstream 300989 34597822 ~ 34599917 (+)
G16668 NA non-coding downstream 439504 34736337 ~ 34736549 (+)
G16692 NA non-coding downstream 478992 34775825 ~ 34777047 (+)
G16698 NA non-coding downstream 524364 34821197 ~ 34821413 (+)
G16705 nkiras2,kbrs2,LOC106607286 non-coding downstream 794626 35091459 ~ 35094092 (+)
G16550 NA other upstream 193350 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 194617 34093276 ~ 34099596 (+)
G16546 NA other upstream 246493 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 619852 33668593 ~ 33674361 (+)
AMCG00016898 NA other upstream 644133 33630012 ~ 33650080 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other downstream 861764 35158597 ~ 35204232 (+)
G17193 NA other downstream 4199218 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 4942240 39239073 ~ 39254490 (+)
G17697 NA other downstream 8094464 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 9829381 44126214 ~ 44137931 (+)

Expression


Co-expression Network