AMCG00016915 (LOC105013349,LOC103368144,LOC102309899)


Basic Information

Item Value
gene id AMCG00016915
gene name LOC105013349,LOC103368144,LOC102309899
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34444401 ~ 34472634 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016915
ATGCCACAAATTGGCAGGGTGCTGAAGATGGCAGTATGGATCCAGGCCCAGCAGCTTCAAGGGGAGGCTCTGCACCAGATGCAGTCTCTGTATGGCCAGCACTTCCCCATCGAGGTCCGGCATTACCTGTCACATTGGATTGAGAGCCAGATGTGGGACTCCATCGATTTGGAAAACCCCCAGGAGGAGTTCAAGGCCAAGCGGTTGCTGGACAGTTTGATCCAGGAGCTGCAGAAGAAGGCGGAACACCAAGTCGGGGAGGATGGCTTCCTGCTGAAGATAAAGCTGGGGCACTACGCTAGTCAACTAAAGAGCACCTACGATCGCTGTCCGCTGGAGCTGGTGCGCTGCATCAAACATATCCTCTACACTGAGCAGAGGCTAGTGCGGGAAGCCAACAATTCCAGCTCTCCGGGAGGAGGGCTGTTGGACAGCATGTCCCAGAAGTACCAGCAGATCAACCAGGCCTTCGAGGAGCTGAGGGTCATGACCCAGGACACCGAGAATGACCTGCGCAAGCTGCAGCACAATCAGGAattaaaaataaataatcatgacAATATCACAACATCCCAGCTGACCAGCCTGTCCACTCTGCCCCTGCCTGACCGCCAGCTGAGGGAGCCCAGCCTGCAGGCCAAGAGGGCCACTGTAGAGTCCTGGCTCACACGGGAGGCCACCACACTACAGAAGTACAGACTGGATCTGGCGGAGAAGCACCAGAAAACTCTGCAGCTGCTCAGGAAACAGCAGACCATCATCCTGGACGACGAGCTGATCCAGTGGAAAAGACGGCAGCAGCTGGCGGGGAACGGTGGGCCACCCGAGGGGGGGCTGGACGTCCTGCAGTCATGGTGTGAGAAGCTAGCAGAGACTATCTGGCAGAACCGGCAGCAGATCAGGAGAGCAGAGCACCTTCGCCAGCAGTTGCCCATCCCCGGCCCCATTGAAGAGCTGCTGACAGAGCTGAACGGCACCATCACAGACATCATATCTGCACTAGTCACTAGCACCTTCATCATCGAGAAGCAGCCTCCCCAGGTGCTGAAGACGCAGACAAAGTTCGCTGCCACGGTGCGGCTGCTGGTGGGGGGGAAGCTTAATGTGCACATGAACCCCCCCCAGGTGAAGGCCACCATCATCAGCGAGCAGCAAGCCAAcGACAGCAGCGGAGAGATCCTCAACAATAACTGTGTAATGGAATACCACCAAACCACTGGAACACTTAGTGCCCACTTCAGAAATATGacattatcacttcctgttgtGGTGATCGTCCATGGAAGCCAAGACAACAACGCCACAGCAACAGTCCTCTGGGACAATGCCTTCGCAGAGCCGGGGAGGGTGCCCTTTATCGTGCCAGACAAAGTGCTGTGGCCGCAACTGTGTGAGGCGCTCAACATGAAGTTCAAGGCGGAGGTGCAGAGCAACCGGGGGCTATCAGAGGAAAACCTGGTCTTCCTGGCCCAGAAGGCCTTCAGCAGCTCCGGCGAAAGCCTACCTGGACGGAACTTCACATTTTGGCAGTGGTTCGACGGGGTCATGGAGCTCACAAAAAAGCACCTGAAGCCCCATTGGAATGACGGTGCAATACTGGGATTTGTCAACAAGCAGCAGGCCCAAGACATGCTGATGTCCAAACCCAATGGCACCTTCCTGCTGCGCTTCAGTGACTCTGAGATTGGAGGCATAACAATCGCCTGGGTGGCAGAAAACCCCAATAAAGCAGgagAGAGGATGGTGTGGAATCTGATGCCGTACACAACCAAAGACTTCTCCATCCGCTCTCTGGCTGACCGCATCAGTGACCTCAACCACCTGCTATTCCTGTACCCCGACCGGCCGAAAGAAGACGTCTTCTCAAAATACTACACCCCTCTACTAACAAAAGCAGTGGATGGATACGTTAAGCCACAGATCAGACAAGTTGTACCAGAGTTTACAACTGCACCCCCTGACCCCACTGGAGGAAATGCCACCTATATGGATCACGCTGCCTCACCCTCCGTCAGTCACCCACACCCCTATGGCATATACCCTCCTGCTAGTGATCCCATGCTGGATGGCGACGGGGAGTTTGACCTGGACGACACCATGGATGTTGCCAGACACGTGGAGGAGCTCTTGCGTCGGCCAATGGAAAACCAGTGGATCGGACACACCCAGTCATGACCCTTGACCCTGCACATCCCTTCCCAAAGCAATCACATAAAGTTTTCTGATGGTTTAAttccattatttgtttgtttgttcgtctgttttttttctcatttttttgtttttgttttattttaaagagccataatgtgaaatgttaataatggttgtgaatcagatttttttttttttt

Function

NR:

description
PREDICTED: signal transducer and activator of transcription 5B

GO: NA

KEGG:

id description
K11224 STAT5B; signal transducer and activator of transcription 5B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016915 True 2353 mRNA 0.53 19 34444401 34472634

Neighbor

gene id symbol gene type direction distance location
AMCG00016916 NA coding upstream 8463 34360227 ~ 34435938 (+)
AMCG00016912 stat3,LOC107653351 coding upstream 104055 34310868 ~ 34340346 (+)
AMCG00016914 ptrfb,LOC105935706,LOC102209316,LOC102787483,LOC101465061,LOC103482185,LOC103142478 coding upstream 147568 34294213 ~ 34296833 (+)
AMCG00016913 ptrf,LOC103029568,LOC105905374,LOC105028466,LOC107742253,LOC107664665,LOC103381660 coding upstream 172983 34268998 ~ 34271418 (+)
AMCG00016910 NA coding upstream 252652 34169488 ~ 34191749 (+)
AMCG00016917 NA coding downstream 8499 34481133 ~ 34499652 (+)
AMCG00016918 LOC106601024,LOC106607294,LOC103359488 coding downstream 85905 34558539 ~ 34597579 (+)
AMCG00016919 NA coding downstream 139009 34611643 ~ 34614856 (+)
AMCG00016921 LOC103352817,LOC104967603 coding downstream 185077 34657711 ~ 34660464 (+)
AMCG00016920 NA coding downstream 206878 34679512 ~ 34698405 (+)
G16552 NA non-coding upstream 338714 34104456 ~ 34105687 (+)
G16542 NA non-coding upstream 449019 33993182 ~ 33995382 (+)
G16512 NA non-coding upstream 793112 33651081 ~ 33651289 (+)
G16395 NA non-coding upstream 1116059 33325094 ~ 33328342 (+)
G16351 NA non-coding upstream 1263962 33180239 ~ 33180439 (+)
G16646 NA non-coding downstream 125188 34597822 ~ 34599917 (+)
G16668 NA non-coding downstream 263703 34736337 ~ 34736549 (+)
G16692 NA non-coding downstream 303191 34775825 ~ 34777047 (+)
G16698 NA non-coding downstream 348563 34821197 ~ 34821413 (+)
G16705 nkiras2,kbrs2,LOC106607286 non-coding downstream 618825 35091459 ~ 35094092 (+)
G16550 NA other upstream 343538 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 344805 34093276 ~ 34099596 (+)
G16546 NA other upstream 396681 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 770040 33668593 ~ 33674361 (+)
AMCG00016898 NA other upstream 794321 33630012 ~ 33650080 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other downstream 685963 35158597 ~ 35204232 (+)
G17193 NA other downstream 4023417 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 4766439 39239073 ~ 39254490 (+)
G17697 NA other downstream 7918663 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 9653580 44126214 ~ 44137931 (+)

Expression


Co-expression Network