AMCG00016920


Basic Information

Item Value
gene id AMCG00016920
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34679512 ~ 34698405 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016920
GACGTGTTTGAGAACAAGCCGTCCATCCCGGAGTACAAGGTAGCAGCAGTGCAGAAGTCGCGCTTCATCCTGCTCCACTACAGCATCTTCAAGGCACTGTGGGACTGGATGATCCTGCTGGCCACCTTCTACGTGGCTGTCACGGTGCCCTACAACGTCTGCTTCACAGCCTATGACGACTGCGACTCTGCCTCCCGCAGCACCATCGTCAGCGACATTGTCGTGGAGATGCTCTTCATCCTTGACATCATCCTTAATTTCCGCACTACCTACGTGAGCCAGTCTGGACAGGTGGTATACGATGCCCGGTCCATCTGCATCCACTACGCTGCCACGTGGTTCTTTGTGGATCTCATTGCCGCCCTGCCCTTTGACCTCCTCTATGCTTTTAACATCACTGTGACCTCCCTGGTTCACTTGCTGAAGACGGTCCGTCTCCTGCGCCTGCTGCGCCTGCTGCAGAAGCTGGATCGCTACTCCCAGTACAGTGCCATGGTGCTCACGCTGCTCATGTCAATGTTCGCCCTGCTGGCACACTGGATGGCCTGTATCTGGTACGTCATCGGCCGCAAAGAGATGGAGAGCAATGATCCCACGAACTGGGACATTGGCTGGCTCCATGAGTTGGGGAAACGGTTGGAAACTCCTTACACCAACAACTCCTTGGGCGGCCCGTCCATCCGCAGCGCCTACATCGCCTCGCTCTACTTCACCCTGAGTAGCCTGACCAGCGTGGGCTTTGGCAACGTCTGCGCCAACACGGACGCGGAGAAGATCTTCTCCATCTGCACCATGCTCATCGGAGCCCTGATGCACGCGGTGGTGTTTGGCAACGTGACGGCCATCATCCAGCGCATGTACTCACGCCGCTCGCTCTATCACACCCGCATGAAGGACCTGAAGGACTTCATCCGCGTGCACCGCCTGCCCCAGCAGCTCAAGCAGAGGATGCTGGAGTACTTCCAGACCACCTGGTCTGTCAACAACGGCATCGACGCCAACGAGCTCTTGCACGACTTCCCGGACGAGCTGCGTGCCGACATCGCCATGCACCTCAACAAGGACATACTGCAGCTGCCCCTGTTCGAGACCGCCAGCCGGGGCTGCctgcgctctctctccctgcacaTCAAGACGTCCTTCTGTGCCCCGGGGGAGTACCTCATCCGGCAAGGCGATGCTCTGCAGGCCAACTACTTTGTGTGCTCGGGCTCCCTGGAGGTGCTCAAGGACAACATGGTGCTGGCCATCCTCGGGAAAGGGGATCTGATCGGGGCTGACCTTCCGGGCAAAGAGCAGGTGATCAAGACCAACGCGGATGTGAAGGCGCTGACCTACTGTGACCTGCAGTACATCAGCGTGCGTGCCCTGCGTGACGTCCTGGAACTCTACCCTGAATACGCCAGCAAGTTCACCGCCGACATCCACCACAACCTCACCTACAACCTGCGTGAGGGCAGTGAGGCCGAGGTGAGGCACAACATTAATTTCGTGCAGCAGCTGTTACATCAGCCTCaaataccttttattttatgtaaacagCAGTCTTCCCTCTgggtgtctgtttgtctgtcaGGCCTCACAAGGTTTGCCCGATCACCAAGGCTTTCTCAGAACCGCATGGACCACAGCCCCGCCCCTGACCACAAGCTGCCAGCCATAGTGGAGGATGAGGACGAGCCTGAGGAGTATTTCCACCTGTCGCCAGCCACCAAGTCGCGCAGGAAGCTGATGCTGCCCAGCCTGAGCAGCCCAGTGCGGCGCGGCTCTGTTGGGAACCTGCTGGGGGACGAGCTGCGCCAGTTCACGGCCCTGAGACGCTGCCGGTCACCTGTGCGGGGCAACCGAGGCCGCAGCCCCTCCCCGCAGCTCCCTAAGGAGGAGCAGCCACCTGTGCCCAGTGCCGAGGCCTGTATAGGACGCAAGCCAGCAAAGCTCCTCATCCCCTCGCTCAACTGCTTCGGCCCCCCAGACCTCAGTCCCAGAGTCGTTGACGGAATCGAGGATAATGGGCGGACATCAGAGATGCACACATTCCACTTCAACGTCGAGGAGAGCGGTGCGAGAGCCAGCGCGGAATGCCTCGTTAAAGAAGACAACCCGGTGAATGCGACCCTGCTGCTGGAGACCGAGGAGGTGAGGCAGAGCATCAGCCGACTCAACCAGGAGATGAGCCACTTGAACCAGGAAGTTTCCCAGCTCACCAAGGAGCTCCACCACATGATGCACTTCCTGCAGGCCCATGTGGCTGTGCAGCACTACACCTCAGCCCTGTCCTCCTACCCTTACGGGGTGCAGATGGTCTCCAACCCTCCTGGCAACAATAACATCAGTGGTGGCAGTGGAGGCGGCGAGTGGCAGCCCAGAATGTCGTACAACCTGGCGGCAGGAATCCACGTCCACCACGAGCCTGGCAGCATGGACCCCCTGAGCCATAGCGGTGGGAGCCCCTGGAGTTACAGCACAGCCCCAAGCAATGCCAGCCACATCCGAGCGGCCACCATTGGCGGCCAGCAAATGGAGATGGAGAGCTACGTCCCTTTGGTTGAGCATTTCCATCCGCCTTCCAGTCCCCGTGCCTCATGCTTTCACGGGCCCTGCTGTGGAGAGCCGGGCAGTACCCTCAACCCAGGAGCCGAGGGCAAGCAGAACTCCTGCCAGGCCTCTGGAAGCACTCCCAACTCTccctacactgcactgcagccaCCACGGCCTTGCCCATCCTTGCTGAGCCCAAGTCCAGCTTTTGTAGGGTTCTCTCCTACTCCCCAAGCCGGGTACGGCAGCACCTTGCCCAGCAACGGACAACCCCTCGGGTCCCCTGCGAACCTCAGTCAGTCCCACCCAGCCTTGTGTCAGCAGGCGTCTGCCAGTGCTGAGTACAGTCACTCCAAGTCGAGCACCCCCACGCCGGTCCATTCCACACTGGTCACTCCCGGTTACTCTCAGCGCCGCGCTTCATGTTCAACCAACCACTTGCACTCCTCCTCAGCCCCCAAGCACGAGCCGTTAATGTGCATCTCGACGAGTCCCCGGCAAAATGACCCCGTCAGTTCCAGCCTCATGCACACCCTAGACGCCAATCTTCTGGAAGTCCACGCAGCCAGTCCCTCAGTCTCAGGACCTACTCTCTCCCACAGAAAACCTTCTTTAGCCTCTCAGGATTCTAACTTGTCTGGGATTGAGACCTCAGGTTCCAGCTATCTCTTCTGTGACACAACTATCTCGGATCACATAGGTTTGGAAGGCCTGGTCATTAAGCCAGGTTCTACTGAAAGGATAGACAGTGAGGCTTCAGAATCCAGGAGGTCCAGTATAGGAACACAGACTCTGGACACGGAGACGTTCTGGAGCCTGGAGATGGCAGACTAG

Function

GO: NA

KEGG:

id description
K04907 KCNH4, KV12.3; potassium voltage-gated channel Eag-related subfamily H member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016920 True 3372 mRNA 0.59 12 34679512 34698405

Neighbor

gene id symbol gene type direction distance location
AMCG00016921 LOC103352817,LOC104967603 coding upstream 19048 34657711 ~ 34660464 (+)
AMCG00016919 NA coding upstream 64656 34611643 ~ 34614856 (+)
AMCG00016918 LOC106601024,LOC106607294,LOC103359488 coding upstream 81933 34558539 ~ 34597579 (+)
AMCG00016917 NA coding upstream 179860 34481133 ~ 34499652 (+)
AMCG00016915 LOC105013349,LOC103368144,LOC102309899 coding upstream 206878 34444401 ~ 34472634 (+)
AMCG00016924 NA coding downstream 9892 34708297 ~ 34727383 (+)
AMCG00016922 kat2a coding downstream 29000 34727405 ~ 34757001 (+)
AMCG00016923 NA coding downstream 63087 34761492 ~ 34773639 (+)
AMCG00016925 NA coding downstream 225785 34924190 ~ 34927331 (+)
AMCG00016926 NA coding downstream 311960 35010365 ~ 35014666 (+)
G16646 NA non-coding upstream 79595 34597822 ~ 34599917 (+)
G16552 NA non-coding upstream 573825 34104456 ~ 34105687 (+)
G16542 NA non-coding upstream 684130 33993182 ~ 33995382 (+)
G16512 NA non-coding upstream 1028223 33651081 ~ 33651289 (+)
G16395 NA non-coding upstream 1351170 33325094 ~ 33328342 (+)
G16668 NA non-coding downstream 37932 34736337 ~ 34736549 (+)
G16692 NA non-coding downstream 77420 34775825 ~ 34777047 (+)
G16698 NA non-coding downstream 122792 34821197 ~ 34821413 (+)
G16705 nkiras2,kbrs2,LOC106607286 non-coding downstream 393054 35091459 ~ 35094092 (+)
G16728 NA non-coding downstream 485930 35184335 ~ 35234875 (+)
G16550 NA other upstream 578649 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 579916 34093276 ~ 34099596 (+)
G16546 NA other upstream 631792 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 1005151 33668593 ~ 33674361 (+)
AMCG00016898 NA other upstream 1029432 33630012 ~ 33650080 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other downstream 460192 35158597 ~ 35204232 (+)
G17193 NA other downstream 3797646 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 4540668 39239073 ~ 39254490 (+)
G17697 NA other downstream 7692892 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 9427809 44126214 ~ 44137931 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_05467255_05480455 KCNH4, KCNH4A coding CI01000034 null 5467255 ~ 5480455 (-)