AMCG00016923


Basic Information

Item Value
gene id AMCG00016923
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34761492 ~ 34773639 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016923
GCGATGAACCTCTTCAACTACCAGACCGAGGTGATCCAGCCAGCTCTGGAAGGGAAGAACATCATCATCTGGCTCCCTACTGGAGGGGGGAAGACCCGGGCTGCAGTGTACGTGGCCAAGAGACACCTGGAGACCAGGGCCAACGCAAAAGTGGCCGTCCTGGTCAATAAGGTGCATTTGGTGGACCAGCACTATGAGAAGGAgttcaaaccattcctgaaaaTGGCCTACAGGATTGCACACATCAGCGGAGACTCAGATCAGAAGGAGTTCTTTACCAGTGTGGTGCAGAATCACGACATCATCATTTGCACAGCCCAGATCCTGGAGAACGCTCTGAACAACACAGAGAAGGAGAAACACATGGAGCTCACAGACTTCACCCTCCTCATTATCGACGAGTGTCACCACACCCAAAAGGACGCGGTCTACAACAAGATCATGGAGCGCTATGTGAGCAGGAAGCTgcgggggctgggggggctACCGCAGGTGCTGGGCCTCACTGCCTCCCCTGGCACTGGGGGGAATAAGACCTTTGATGGAGCCAAGCAACATGTGCTGCAGATTTGTGCAAACCTGGATGCTTCAGCAATCATGTCTTGCAAGGTGCACGTTGAGGATCTGGAGAAGAAAGTCCCCAAACCTAGAAAGCAGTATGACATTGTCAACGACAGAGAGGAGGACCCATTTGGGGACAAGCTGAAGGAGATTATGAGGAGGATTCATGACTACATGGACGTTGATGGGATCAGCCGTGCATTCGGGACACAAGACTATGAACAGGAAGTGGTGCTGTTGGAGAAGACAGGGGCGGAGGAGGGGAACCGGCGGACATCTCAGTGCGCTCTGCATCTACGGAAATACAACGACGCCCTGCTGATCCACGACACTGTGCGCATGATTGACGCCTTCAGGGTGCTGGAGGACTACTACAGCGGCCAACGGAGCACCCGGATGGGCCTTGACCACACTGACCGCTACCTCTTCACTCTCTTTAAAGAGCATGAGCAGGAGCTCGAGCAACTGGCTGAACTGGAGTGTTTCGAGAATCCCAAGCTGGCCGTCCTGGAGAGCACACTGCTGGAGCAGTTTGTACAGAAGAGCACATCACGTGGGATCCTTTTCTCCAAGACGCGTACCAGCACCCACTGCCTGCATGACTGGGTGCGCTCCAACCCGCGGCTCCAGAAAaGGCAGCAGAAGAATACGATCCAGGATTTCCGTAACGGACACCTGAACCTGTTGATCTCCACCAGCGTGGCGGAGGAGGGGCTAGACATCCGAGAGTGCAACCTGGTGGTGCGCTACGGCCTGATCACCAATGAGATCGCCATGAAACAGGCGAGTGGCCGTGCCCGTGCTTCAAATAGCGTGTACTCGGTGGTGGCATCACAGAGGGGGCCAGAGCTGAGGAAGGAGAAGGTCAACGAGTGCCTGGAGAAACTGATGGAGAGAGCCATTGAGGAGGTGCAGCACATGGCCCCCCGCGAATACATGCTGAAGATCCAGGAGCTGCAGAAGGAGGCGGTGATCATGCGGCGACTGGCAGAGGAGAAGGTGCAGGGCAAGCGCAGGCGCTACGAGCCGGCCGCGGTCAGGCTGTACTGCCGCCGCTGCCAAACCGCCGTCTGCCATGGCAGTGACCTCCAGGTCATCGAGAGCACGCACTACGTCAATGTCAACCCCCACTTCGAgaTTTATTACATTAAAGGAGGAAAGATTATCATTGACAGAAAGTTTGAGGACTGGGAGCCAGGCTGTAAGATCAGCTGTACAGACTGCGGtcagGAGTGGGGAATGGAGATGATCTATAAAGGGGTGTTTCTCCCCAACTTGGCCATCAAGAACTTCATCTTGGAGACGCCTGATGACAGAAAATCCACCAAGAAGTGGAAAGACATCCCCTTCCTCGTGTCGGACTTCGATTACGTGCAGTACTGCGAGAGGAAGTTCTCTGATTCCCTGGCCGATCTCTTCTGA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0016817 hydrolase activity, acting on acid anhydrides molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12649 DHX58, LGP2; ATP-dependent RNA helicase DHX58

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016923 True 1983 mRNA 0.55 12 34761492 34773639

Neighbor

gene id symbol gene type direction distance location
AMCG00016922 kat2a coding upstream 4491 34727405 ~ 34757001 (+)
AMCG00016924 NA coding upstream 34109 34708297 ~ 34727383 (+)
AMCG00016920 NA coding upstream 63087 34679512 ~ 34698405 (+)
AMCG00016921 LOC103352817,LOC104967603 coding upstream 101028 34657711 ~ 34660464 (+)
AMCG00016919 NA coding upstream 146636 34611643 ~ 34614856 (+)
AMCG00016925 NA coding downstream 150551 34924190 ~ 34927331 (+)
AMCG00016926 NA coding downstream 236726 35010365 ~ 35014666 (+)
AMCG00016927 NA coding downstream 260176 35033815 ~ 35081248 (+)
AMCG00016928 dnajc7,LOC106607285 coding downstream 323951 35097590 ~ 35116668 (+)
AMCG00016930 NA coding downstream 348308 35121947 ~ 35131005 (+)
G16668 NA non-coding upstream 24943 34736337 ~ 34736549 (+)
G16646 NA non-coding upstream 161575 34597822 ~ 34599917 (+)
G16552 NA non-coding upstream 655805 34104456 ~ 34105687 (+)
G16542 NA non-coding upstream 766110 33993182 ~ 33995382 (+)
G16512 NA non-coding upstream 1110203 33651081 ~ 33651289 (+)
G16692 NA non-coding downstream 2186 34775825 ~ 34777047 (+)
G16698 NA non-coding downstream 47558 34821197 ~ 34821413 (+)
G16705 nkiras2,kbrs2,LOC106607286 non-coding downstream 317820 35091459 ~ 35094092 (+)
G16728 NA non-coding downstream 410696 35184335 ~ 35234875 (+)
G16731 NA non-coding downstream 467140 35240779 ~ 35241527 (+)
G16550 NA other upstream 660629 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 661896 34093276 ~ 34099596 (+)
G16546 NA other upstream 713772 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 1087131 33668593 ~ 33674361 (+)
AMCG00016898 NA other upstream 1111412 33630012 ~ 33650080 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other downstream 384958 35158597 ~ 35204232 (+)
G17193 NA other downstream 3722412 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 4465434 39239073 ~ 39254490 (+)
G17697 NA other downstream 7617658 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 9352575 44126214 ~ 44137931 (+)

Expression


Co-expression Network