AMCG00016938


Basic Information

Item Value
gene id AMCG00016938
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 35395992 ~ 35399030 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016938
ATGCGACGCCTGgctctgaacacacacagctgcagcacatCTGGACTCCATGATGGCGAGCAGGGATGGGGAGGGGGCACAGAGGAGCCCCTCCGCTCGGCGGTGCAGACGGCACTGCTATCCATAGGCCCGCCTCAACCCTCTTCAGCTGCgacctcctctcctcctctgctcctctctccctctctccgctcACTCCCTGCTCTCCGCATCTCTGGTCCACCGCAGCCCGTCACCGCCTGTCACCATCGCCCGCGGATTGCGTCACTGCCAGGGGGACGCAATGGGTTTCTGCGGGCTTCGGAACCGCTGCGCATCAAAAGCACAAATGCCCCAGGACTGGCGGGGCTGGAGTCATGGACCGAACCCCGCATCGTAGATGAGTTTTCCGGTCCGGGGATggaggggtgtggggggtggagAGGGACGTGTCCACttcctccctctgtccctctctctgtgtgtctcatttTGGACAGGACACCATCACCTTGGGACCTTTGGCTCATTTCACCTCCACTTGGTGGAAAAGACGAGCACCTGAACTGCAAATGCCTCTTACTCTCTCTCCCCGACTAAGAGACTGCCCTGCCGGCTCCCCCAGCTCCTTCGACCTCCACAATATTAGCTGCCTCTCTTTCTTAATCCCTTGACTTTCCACACTGCACTTCACTGCATTCCTCACTCCCAGTCCCCCTCACTCTACTCTATAGTATTCCACCTGCTTCCACCTTTGTCCCTGGGTTTTCCCACACATGTTTTGCTCTCaaatttttcccttttctgcttCCTGGAACACACTGTCCCACTAGCCAACAACCCCTAAAGAGGCTatatattgctcttatattttgtaagtcaccctggacaagggcgtctgccaatacataaaaaataataaaaataataataataaaaatataggaCAGATCTCTGCTAATTATCTTCTTTAGGTGGTACTGCAGAACATCAGTGTATGCTAGCGTCACTTAGGTCAACAGCAGGACAGTTAGGCATGTTCGGTGAAATGCATTATCTGTACATTATCTGTTGATGTCCTCATTAGAGAACAGAAAGTTTAATTGTCTGTCACGGGATGGCCATGAAAAACGTCAGCTCGCCAGGTCAGTAGAAAACTGTGCAGAGAGACTGGACCGTTCCAAGTTGGGGGTGTTCATAAAAGTCATTTAAGTTGgacaaaaagacacattttcacTAAAGACATCATCCCTTGCCCAGATTACAATCAGAGAACTGGCGAGTGTGCACTGTGTGTGGGGACAGAGCTGATTAAGGAAAAGTTTAAAGTGATCATGTATCcaaaatgaaatagaaatacTGGGACTTAAACAGGTTATGTCTCTGTGCTGGAAACGTCATATAGCACTGCAATTGGATTGTTAGCCCTGTTTCTGTGTTGATGTTTTATGTTATAGTAAGCTATTGTCAGTGTTTTTGCTGCTGATTAGACAAGTGTAAAGGTGCCATTTGTGTCTGCTTTTCATTATAAGTCATCTGCTGGTGAAAAGGGACCATTTTTGAAGAATTTATCTGTACCACTCATCAGGAAGTACTACATTGGTTCATGTGCTGTAGCAGCTACTCAGAACTGGTAGATAAACACCAGTGAGCATGCACTCCAAGGAGGAGCAGACTTGTGTTGCTCAGAATAGTATTACTGTTGCGATTCCTGTGTTATTCCTTGCTCTTCCATTCTGGTCTGTAAGTCTTTAGCCTGTTTTTTCTGCACCTTTTCTGGGTTTGAGCTCAATCATTTCTGTAGCCGTGAAGCAGTTTAATAAAGATCTGGTTATAAGAGG
>TU20874
CTCAACCCTCTTCAGCTGCgacctcctctcctcctctgctcctctctccctctctccgctcACTCCCTGCTCTCCGCATCTCTGGTCCACCGCAGCCCGTCACCGCCTGTCACCATGTTGGACATCTTGGTCTTGATGTTCTTTGCCATTATCGGGCTCGTCATCTTGTCCTATATTATTTACATGCTGTAAGCAGCGCCCGCGGATTGCGTCACTGCCAGGGGGACGCAATGGGTTTCTGCGGGCTTCGGAACCGCTGCGCATCAAAAGCACAAATGCCCCAGGACTGGCGGGGCTGGAGTCATGGACCGAACCCCGCATCGTAGATGAGTTTTCCGGTCCGGGGATggaggggtgtggggggtggagAGGGACGTGTCCACttcctccctctgtccctctctctgtgtgtctcatttTGGACAGGACACCATCACCTTGGGACCTTTGGCTCATTTCACCTCCACTTGGTGGAAAAGACGAGCACCTGAACTGCAAATGCCTCTTACTCTCTCTCCCCGACTAAGAGACTGCCCTGCCGGCTCCCCCAGCTCCTTCGACCTCCACAATATTAGCTGCCTCTCTTTCTTAATCCCTTGACTTTCCACACTGCACTTCACTGCATTCCTCACTCCCAGTCCCCCTCACTCTACTCTATAGTATTCCACCTGCTTCCACCTTTGTCCCTGGGTTTTCCCACACATGTTTTGCTCTCaaatttttcccttttctgcttCCTGGAACACACTGTCCCACTAGCCAACAACCCCTAAAGAGGCTatatattgctcttatattttgtaagtcaccctggacaagggcgtctgccaatacataaaaaataataaaaataataataataaaaatataggaCAGATCTCTGCTAATTATCTTCTTTAGGTGGTACTGCAGAACATCAGTGTATGCTAGCGTCACTTAGGTCAACAGCAGGACAGTTAGGCATGTTCGGTGAAATGCATTATCTGTACATTATCTGTTGATGTCCTCATTAGAGAACAGAAAGTTTAATTGTCTGTCACGGGATGGCCATGAAAAACGTCAGCTCGCCAGGTCAGTAGAAAACTGTGCAGAGAGACTGGACCGTTCCAAGTTGGGGGTGTTCATAAAAGTCATTTAAGTTGgacaaaaagacacattttcacTAAAGACATCATCCCTTGCCCAGATTACAATCAGAGAACTGGCGAGTGTGCACTGTGTGTGGGGACAGAGCTGATTAAGGAAAAGTTTAAAGTGATCATGTATCcaaaatgaaatagaaatacTGGGACTTAAACAGGTTATGTCTCTGTGCTGGAAACGTCATATAGCACTGCAATTGGATTGTTAGCCCTGTTTCTGTGTTGATGTTTTATGTTATAGTAAGCTATTGTCAGTGTTTTTGCTGCTGATTAGACAAGTGTAAAGGTGCCATTTGTGTCTGCTTTTCATTATAAGTCATCTGCTGGTGAAAAGGGACCATTTTTGAAGAATTTATCTGTACCACTCATCAGGAAGTACTACATTGGTTCATGTGCTGTAGCAGCTACTCAGAACTGGTAGATAAACACCAGTGAGCATGCACTCCAAGGAGGAGCAGACTTGTGTTGCTCAGAATAGTATTACTGTTGCGATTCCTGTGTTATTCCTTGCTCTTCCATTCTGGTCTGTAAGTCTTTAGCCTGTTTTTTCTGCACCTTTTCTGGGTTTGAGCTCAATCATTTCTGTAGCCGTGAAGCAGTTTAATAAAGATCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016938 True 1820 mRNA 0.48 3 35395992 35399030
TU20874 False 1757 lncRNA 0.46 2 35396002 35398897

Neighbor

gene id symbol gene type direction distance location
AMCG00016937 NA coding downstream 83279 35273923 ~ 35312713 (-)
AMCG00016936 NA coding downstream 150341 35235592 ~ 35245651 (-)
AMCG00016931 NA coding downstream 299490 35091453 ~ 35096502 (-)
AMCG00016911 LOC105028465,LOC108426558,LOC107655803,LOC107557242 coding downstream 1132982 34214899 ~ 34263010 (-)
AMCG00016908 NA coding downstream 1387192 34000597 ~ 34008800 (-)
AMCG00016940 lasp1,LOC102776212 coding upstream 5600 35404630 ~ 35410252 (-)
AMCG00016939 NA coding upstream 12549 35411579 ~ 35420041 (-)
AMCG00016942 NA coding upstream 58167 35457197 ~ 35484896 (-)
AMCG00016944 lhfpl4,LOC107716887 coding upstream 325503 35724533 ~ 35725033 (-)
AMCG00016952 NA coding upstream 853345 36252375 ~ 36279677 (-)
G16804 NA non-coding downstream 33666 35362123 ~ 35362326 (-)
G16790 NA non-coding downstream 125453 35270117 ~ 35270539 (-)
G16761 NA non-coding downstream 173454 35216103 ~ 35222538 (-)
G16712 NA non-coding downstream 277086 35116112 ~ 35118906 (-)
G16693 NA non-coding downstream 618944 34775825 ~ 34777048 (-)
G16858 NA non-coding upstream 285673 35684703 ~ 35733304 (-)
G16893 NA non-coding upstream 443900 35842930 ~ 35912085 (-)
G16927 NA non-coding upstream 952923 36351953 ~ 36352178 (-)
G16979 NA non-coding upstream 1310121 36709151 ~ 36709355 (-)
G16986 NA non-coding upstream 1774851 37173881 ~ 37174163 (-)
G16563 NA other downstream 1288051 34106690 ~ 34107941 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 1882413 33488725 ~ 33513579 (-)
AMCG00016889 LOC107570748,LOC106906011 other downstream 1961341 33391789 ~ 33434651 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 2217109 33176076 ~ 33178883 (-)
AMCG00016859 NA other downstream 2888673 32497507 ~ 32507319 (-)
G17032 NA other upstream 2359127 37758157 ~ 37758471 (-)
AMCG00016959 NA other upstream 2476220 37875250 ~ 38058939 (-)
G17421 NA other upstream 5817621 41216651 ~ 41217231 (-)
AMCG00017014 NA other upstream 6537896 41936926 ~ 41938563 (-)
G17842 NA other upstream 7409681 42808711 ~ 42864616 (-)

Expression


Co-expression Network