AMCG00016950


Basic Information

Item Value
gene id AMCG00016950
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 36501049 ~ 36524631 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016950
TCGCACTCCGGATTACATCTGTGCAGTATACTGCAGTGTTCAATCACTACACCTGACAAAGGCAGATCGGGTACCTTTCAAAAAAGCTCCAAGTGGTGTGTCACAAGTTAAGCAGACATGAAGATTGCTGTAATTGGACAGAGCCTGTTTGGGCAGGAGGTTTATAAGGAGCTGGTGAAGGAAGGGCACCAGATTGTAGGTGTTTTTACAATCCCAGACAAGGATGGAAAAGCAGATCCTTTGGCCATGGAGGCGGAGAAGGATGGTGTGCCCGTGTTTAAATTCCCACGCTGGAGATTGAAGGGGAAGGGTATTCCAGAGGTGGTGATGCAGTATAAAGCAGTGGGAGCAGAACTCAATGTGATGCCCTTCTGCTCACAGTTCATTCCCATGGAGGTCATTGACTTCCCCAAGCATGGCTCCATCATTTACCACCCCTCCTTACTGCCACGCCACAGGGGCGCTTCGGCCATCAACTGGACCTTGATCCACGGGGATAAAAAAGGTGGTTTCACAGTGTTTTGGGCAGATGATGGTCTGGACACGGGGCCAATCCTCCTGCAGAGAGAGTGTGATGTTGAACCAGATGACACAGTAAACACCATCTACAATAGGTTCCTTTTCCCAGAGGGGGTTAAAGGCACAGTGGAGGCAGTGAGGCTGATAGCAGAGGGAAAAGCCCCAAAGATAACCCAGACAGAAGAGGGAGCAACATATGAGGGAATCCAAAAAAAGGACAATGCAAAGATTAGCTGGGACCAGCCTGCTGAAGCCATTCACAATTGGATCAGAGGGAATGACAAAGTACCTGGAGCTTGGGCAGAAGTAGATGGACAGAGAGTAACCTTTTACGGTTCTTCACTGGCAGAGAATGCCTCCTCTTTGGATGGGCAGCCTCTGGATATCCCAGGAGCCAGCAGGCCAGGAAAGGTCACCAAAAACGGGCTGGTCCTGTTTGGCAACGATGGCAAGACGTATTTCCACTCTGGTGACAGCAGCACCGTGGAACTAACAGAGGAGGAAAAGAGCTTTGCTGAGGAGATACGGGGTGTCTGGAAAGGCATATTGACAAATGTAGCTGACATTCAGGATTCAACTGACTTTTTCAAGTCTGGAGCAGCATCTATGGATGTTGTCCAGAACGAGGATGTGTACATGGCCTCCACCTTCCAGGAATTCATACAGATGCTGGTGCGCAAGCTGCGAGGCGAGGACGGCGAGGAGGAAATCGTAGTTGATTATgGCATCTGTAATGTATCCCTGGCCCAGGTCTCTGATGTGGACAAAGCTGTTGCAGCAGCTAAAGAGGCATTTGAGAATGGAGAGTGGGGGCGAATGAACCCCCGTGATAGAGGAAGGCTGATTTACAGACTGGCTGACCTCATGGAGGAACACCAGGAAGAGCTGGCCACTATCGAGGCCATTGACTCAGGCGCTGTCTACACTCTGGCCCTGAAGACCCATGTTGGAATGTCCATCCAGACATTCAGATACTTTGCAGGCTGGTGTGACAAGATACAGGGCTGCACCATCCCCATCAATCAAGCTCGACCTAATCGAAACCTGACTTTCACGAAAAGAGTGCCAATAGGAGTGTGTGGAATCGTTATTCCCTGGAATTACCCCCTTATGATGCTGGCCTGGAAGACCGCAGCATGTTTAGCTGCTGGTAACACTGTTGTTCTCAAACCAGCCCAGGTAACTCCCCTTACCGCTGTCAAATTTGCAGAGCTCACCGCCAAGGCAGGTTTTCCTAAGGGAGTGGTCAACATTCTGCCAGGAGCAGTGAGTAATGTGAAAAAGGTTTCCCTGGAACTAGGGGGTAAATCCCCTCTCATTATCTTCAGTGACTGTGACATGGACAAAGCAGTGCGCATGGGAATGAGCTCTGTGTTCTTCAACAAAGGGGAAAACTGCATAGCAGCTGGGAGACTGTTTGTAGAGGAGGTGAAAAAGATGAAGATCGGAGACCCATTGGACAGGTCCACTGACCATGGACCTCAAAATCACAGAGCCCACCTGGACAAACTAGTCCAGTACAGCGACACAGGTGTGAAGGAAGGAGCTACACTGGTTCATGGAGGGAAGCAGCTTGATCGACCAGGTTTCTTCTTTCAGCCCACAATTTTTACTAATGTGGAGGACCACATGTACATTGCTAAAGAGGAGTCCTTTGGCCCCATTATGATTATCTCCAAATTCAAGGATGGTGATGTTGATGGTGTTCTGAAACGGGCCAATGACACAGAGTTTGGCCTGGCCTCTGGGGTGTTCACCAAGGACATCAACAAGGCCTTGTACGTCAGCGACAAACTGCAGGCCGGCACAGTTTTTGTCAATACCTACAACAAAACTGATGTGGCGTCCCCTTTTGGAGGATTCAAGCAGTCTGGCTTTGGTAAAGACCTAGGTGAAGAGGCTCTGAATGAATACCTGAAGACAAAAGCAGTGACTATTGAATATTAACAGTAGTGGACAactatcattttgtatttggttttattataattaatttatagtaaaaataacaatacaaatcctAGTCCTTAACCTTGTTTTTACAGCATTAGAAACTCACAGTGGCTTTCTTTCCCCATActattgttttgtataaaagcttttttggaaatccaatgttatttttttcccataaaAATCAGTACAAGAGCTATAAACAATTTCACAATACATAAATCTGTGTAATAAATCTAAACATGCATTTCATCTCTTGAGAAGCACTATTATTTGTTTGTCCCAAATGACTTTATTGACCACTTTATTGTTCAATAGGGTTTTTactcacatttgcatttcaaaagatATAGATAAatccaatgtttgttttataatttttgaGAACAGAGGTTGATACATTGTATTGCAGCCTGTGTAATAGAATATCTGATTGCTTATtgctgtaatttgtaattttagaagttatattaacatttaatttgctccaATAACCATTTAATTGCTTTATGTTGTGCCCCACCTCAGCATTTGGTTATGAAGTCGCAAATCAcataattttgttgttttgattttgtcttttaaaacataaacttTAATTGTCTGACTATGCTTCTTTAATAGACTATGAAAATGTATAGTAAAAAATGTTTGAAGCCTATTTGTCATCAGTTAGACATTGTATAAGTATGTCATTGTAAAATGTCCTCTTCTGACAACTTCTGGATAACAGTACTCGGCATACATGTAACTTAATGCTGATGTGTACCACTGACATTATGTTTTGAGATTGAAagcaatgtaatacaatatttttacttatttttgcatttttactgGAAAGTCAGCTTTTAAtaacctaaaaataaacaagtccAAAATTGCTAACA

Function

GO:

id name namespace
GO:0009258 10-formyltetrahydrofolate catabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016742 hydroxymethyl-, formyl- and related transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0016155 formyltetrahydrofolate dehydrogenase activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00604 MTFMT, fmt; methionyl-tRNA formyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016950 True 3362 mRNA 0.44 21 36501049 36524631

Neighbor

gene id symbol gene type direction distance location
AMCG00016949 NA coding upstream 199156 36299372 ~ 36301893 (+)
AMCG00016947 NA coding upstream 248834 36241389 ~ 36252215 (+)
AMCG00016948 NA coding upstream 298847 36102366 ~ 36202202 (+)
AMCG00016946 NA coding upstream 652301 35803148 ~ 35848748 (+)
AMCG00016945 mtmr14 coding upstream 715890 35775076 ~ 35785159 (+)
AMCG00016951 LOC105894324,LOC105023857,LOC106566981,LOC103373809 coding downstream 9305 36533936 ~ 36559981 (+)
AMCG00016960 NA coding downstream 1560659 38085290 ~ 38087536 (+)
AMCG00016966 NA coding downstream 1797334 38321965 ~ 38336646 (+)
AMCG00016965 NA coding downstream 1813014 38337645 ~ 38351463 (+)
AMCG00016970 NA coding downstream 1871068 38395699 ~ 38399287 (+)
G16863 NA non-coding upstream 602533 35898207 ~ 35898516 (+)
G16814 NA non-coding upstream 1051878 35399828 ~ 35449171 (+)
G16806 NA non-coding upstream 1119266 35381497 ~ 35381783 (+)
G16788 NA non-coding upstream 1149129 35351577 ~ 35351920 (+)
G16784 NA non-coding upstream 1194324 35306489 ~ 35306725 (+)
G16969 NA non-coding downstream 156708 36681339 ~ 36681552 (+)
G16984 NA non-coding downstream 448433 36973064 ~ 36973283 (+)
G16990 NA non-coding downstream 722797 37247428 ~ 37303443 (+)
G16998 NA non-coding downstream 889483 37414114 ~ 37418704 (+)
G16999 NA non-coding downstream 899856 37424487 ~ 37424697 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 1296817 35158597 ~ 35204232 (+)
G16550 NA other upstream 2400186 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 2401453 34093276 ~ 34099596 (+)
G16546 NA other upstream 2453329 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 2826688 33668593 ~ 33674361 (+)
G17193 NA other downstream 1971420 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 2714442 39239073 ~ 39254490 (+)
G17697 NA other downstream 5866666 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 7601583 44126214 ~ 44137931 (+)
G18192 NA other downstream 8130021 44654652 ~ 44656098 (+)

Expression


Co-expression Network