AMCG00016952


Basic Information

Item Value
gene id AMCG00016952
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 36252375 ~ 36279677 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016952
GTTCACACAAACTTGTATCATGTCATCCCCATCACTAGTTCCCTCCTCAACATCTCCAGAAATGATGTCATCAGGGAAGGTATCGGTGCCACAATCCACATCACGGCAGTCCACTAATCCCTCAGCAAAATCAAGATCTGAAACAAAGTCTATAGTATCAGttcaaGATGATGATGACCGAGCCAGCAAAAACCCCTTTAGGCTACCTCCAAATAGTGATATTTTCCTTCTAAGGGACAAGGAGAGAGAACGCCAGAAGCTGGAACGTGAACGGGAAAAGAATCTCAAGATCCATCAAAAGACCACCTATGCAGGCCAGATGAACAAGAAACGAGCAGAGTTAAGACGCAAgatgaaagagggagaggatgTTGGGACAGATGAGAGAAATGAAGAAGCAGCCATTCTGGCTCTCCGAGATGACCCATCATGGAAACTAGCCACGACAAAAGATCGCAACATAGAACGAGAAAGCATAAATGAATTCATCTGTaagaaaagagaaatgtttctgttgcagTACTCATTGGCAGTGAAGAGGGATGAGATCCGCAAGCTAGATGAAGGTGCCGCAGCGGAGGAGCGCAAACTGGAAAAGGCCGAGCAGTATCTGGAGGAAGACACGGCCATGTTTGATGAGTTCCTCAAAGAGAATGACAAAAATTCAGTGGAAgccattaaaatTGCAGAACAAGAAGCAAAGGTGAAACTGGAGAAAGTGTCGGAAATTAAAAAGATCTCAACCAAAATGGTTTCACTCAAAAGTGACATTTCAAAGCATGAGGAGATCCTGAAGGAATACATGATGTACAAGGAGTTCCTTATTAAACTTTCACCAAAGGAATGGAGGCAAAAGTttgaggagaaaaggaaaactcGAGCTGCACTGAAGGAAAAAGGAGAAAGAGTGTCAGACTCTGCAAAACGCACAGACAGCAGGTCCTCCAGTGGAGCCCAGCAAGCTGGAAAAGATGGAGTATTAGGCCGTGACTCCAGTGTCCCATCTAGACATAGTGGGAAAGCACCTTCAGCAAGCAGAAAGTGGAGCTCTATATCCCacaaagaggaggaagaaaCCTCATCAGAAGATGATGagGAGCCAGAGCTATTCTTCACAGAACCACAGCAGCTACTTGACATTCTGACAGAGCTTGAGGAGCAGAACCTCTCTCTCATCCAGAACTCCAGAGAGACTGAGGAAGCCCTGGAGGAGTTCAAACACACCATGAGCAACACCCACCAAAAGATGAATCAGGAGACGGAGATTCTGAAGCAACAGATAGATGTTCTGAAGGACACAAttgaccgagagagagagagggctgctGAGCTAGAACTTAAAGCCAGACTGTTTTCTTATGGACAATTCAAAGGAGAGGACCAGGATGATATGATGGAGAGGCTGGAGAAGAAGGTGGGGGAGGTTTATCGAACTTGTATTGGAGACAATGAGGCCAACCTCAGTGCTCTGCAGATGCTCACTTCCATCGAGAGTCGACTGGATGAGCTGTTTGAGAACATCGAGATGATCCCACGTGAGAAGGTGCAGCTTGCCGAAAAGGTCAAGGAGAAAGAACGGCGTCTCAGGCTTAGGGAAGAAAAAATCAAAGTACAGAAGCAGCATCAGGAGGAGAGACTAAGGAAAGCCTTGGAGAGAGCCCAAGCTGACATCAAGAAAGCTGCAGGAAAAAAGTTGATGTTTCGTTCACAACCGCCTGCATGCAAACCAAAGGAGAACAAGGATCAAGACATTacagacaaagagaaagaggAGCAGCTGTACTTTTTCACCTAGAGGACTGTTTAGGAGAACTTGCTCCTTATCTAGTTTAGCTCAGTTAAAGACTTTATTTATAAACTAACccagaaacattacaaatgttcAGAAAACTAATATATCCCCAAATTATTAAAGAGGCAGATCAAATGGGCAGTTCAATTGTGCAGTGCAATGCAGAATTATTAAAGAggtaaaacagcagcagcattcACTTTGAATGAGCTTAGCCTTTCAGAGGGCTCCATACCTTAAGTATACCTCAAGAAACAAGATGCAGATTATTTTCTAAACTTTGTTCTTAGAACTACCCCCTAATTTTGTGGTATTTGGTAAATGCAGTGTTGGTTTTGTCCCTATAATACATCAAATCCTAATATTGTAAAATCAATTATGTACATTAAATGATTTGTGGGGGCTAGttccaaagaaaatgtaattgattcaATAAAATTCATATGTTGTCCATGAAAATGTGTCTGAAATGTGTTGATCTGTAAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016952 True 2280 mRNA 0.43 15 36252375 36279677

Neighbor

gene id symbol gene type direction distance location
AMCG00016944 lhfpl4,LOC107716887 coding downstream 527342 35724533 ~ 35725033 (-)
AMCG00016942 NA coding downstream 767479 35457197 ~ 35484896 (-)
AMCG00016939 NA coding downstream 832334 35411579 ~ 35420041 (-)
AMCG00016940 lasp1,LOC102776212 coding downstream 842123 35404630 ~ 35410252 (-)
AMCG00016937 NA coding downstream 939662 35273923 ~ 35312713 (-)
AMCG00016953 LOC107715024,LOC107664194,LOC102787184 coding upstream 286604 36566281 ~ 36570011 (-)
AMCG00016954 txnrd3,LOC100702976,LOC106511133 coding upstream 403073 36682750 ~ 36701982 (-)
AMCG00016955 plxna1,LOC106572368 coding upstream 1138750 37418427 ~ 37499161 (-)
AMCG00016957 plxna1,LOC106572368 coding upstream 1256196 37535873 ~ 37569505 (-)
AMCG00016956 plxna1,LOC104944641 coding upstream 1407338 37687015 ~ 37688235 (-)
G16893 NA non-coding downstream 340290 35842930 ~ 35912085 (-)
G16858 NA non-coding downstream 519071 35684703 ~ 35733304 (-)
G16804 NA non-coding downstream 890049 35362123 ~ 35362326 (-)
G16790 NA non-coding downstream 981836 35270117 ~ 35270539 (-)
G16761 NA non-coding downstream 1029837 35216103 ~ 35222538 (-)
G16927 NA non-coding upstream 72276 36351953 ~ 36352178 (-)
G16979 NA non-coding upstream 429474 36709151 ~ 36709355 (-)
G16986 NA non-coding upstream 894204 37173881 ~ 37174163 (-)
G16988 NA non-coding upstream 916085 37195762 ~ 37196078 (-)
G16992 NA non-coding upstream 962082 37241759 ~ 37337110 (-)
AMCG00016938 NA other downstream 853345 35395992 ~ 35399030 (-)
G16563 NA other downstream 2144434 34106690 ~ 34107941 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 2738796 33488725 ~ 33513579 (-)
AMCG00016889 LOC107570748,LOC106906011 other downstream 2817724 33391789 ~ 33434651 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 3073492 33176076 ~ 33178883 (-)
G17032 NA other upstream 1478480 37758157 ~ 37758471 (-)
AMCG00016959 NA other upstream 1595573 37875250 ~ 38058939 (-)
G17421 NA other upstream 4936974 41216651 ~ 41217231 (-)
AMCG00017014 NA other upstream 5657249 41936926 ~ 41938563 (-)
G17842 NA other upstream 6529034 42808711 ~ 42864616 (-)

Expression


Co-expression Network