AMCG00016955 (plxna1,LOC106572368)


Basic Information

Item Value
gene id AMCG00016955
gene name plxna1,LOC106572368
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 37418427 ~ 37499161 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016955
gATTGCCCACAGATCCTCCCTTCCACTCAGATATACATCCCCGTAGGTGTAGTGAAGCCCATCACCCTGGCAGCCAAGAATCTCCCCCAGCCGCAGTCAGGCCAGAGGAACTATGAATGCATCTTCCACATCCAGGGCACAGTTATCAGTGTCACAGCACTGCGTTTCAACAGCACCAGCATTCAGTGCCAGAAGACTTCGTATGTCTATGAAGGAAATGACATCAGCGATCTTCCTGTGGACCTCTCTGTGGTATGGAATGGAAACTTTGTCATTGACAACCCCCAAAACATTCAAGCTCACCTGTATAAGTGCACTGCCCTTCGAGAAAGCTGTGGCATGTGCCTTAAAGCAGATCCACGCTTCGAATGCGGCTGGTGTGTTCAGGAGAAGAAATGCTCCTTGCGGCAGCACTGCCCCATCCACGAAAGCAGTTGGATGCATGCCAGTGCCGGGAACAGCAGGTGCACCCATCCCAAAATCACTAAGCTCCTTCCAGAAACTGGACCCAGACAAGGTGGAACCCGGTTGACTATCATTGGTGAGAATCTGGGGCTGCAGTTCCGAGACATCCAATCAGGAGTGAGAGTGGGCAAAGTGGTGTGCTACCCCATTGAGGAAGAGTACATCAGCGCTGAACAaatTGTGTGCCAGATTTCTGACGCCACTGGCTATAGGGTTCAGGAGGCCAATGtggaagtgtgtgtgagagactgcAGCTTAGACTACAGAGCCATCTCCCCGAAGACATTCACCTTTGTTacacccTATTTTTCAAGAGTGAACCCACCCAGGGGTCCAGTCTCAGGAGGAACACGCATCACCATTGAGGGGAATCACCTCAATGCAGGCAGTGCAGTGTCGGTCAACATTGGCCTCCACCCCTGCAGATTTGAGAGGAGGAGTAccagagagattgtgtgtgtgacaccATCTGGACAGAATCCAGGGGGCACCCCAGTCATGGTGGACATTAACTGGGCCGAACTCAGAAACCCTGAAGTCAAGTTTAATTACACAGAGGACCCCACAATCTTGAAAATCGACCCTGAGTGGAGCATTGCCAGtggTGGAACACCATTGACTATCACAGGCATCAATTTAGCCACCATCAAAGAACCCAAGATACGGGCCAAGTATGGATCTGCGGAATCCTTCGATaaCTGCACTGTCCACAATGACTCGACGATGGTGTGCTTCGCTCCATCTGTGGCTGAATCTGAGAAAAGCTTCTCTGACAGTGGAGACCGACCTGACGAGATTGGCTTCATCATGGACAATGTCCAGTCTGTGCTCATCGTCAATGAAACAGTGTTTAGTTACTACCCTGACCCCGTCTTTGAGCCCCTGAGCACCTCAGGAATTTTGGAGCTCAAACCTAGCTCCCCCCTCATACTCAAGGGCCGGAACCTAATTCCTTCAGCTCCTGGAAACTCCAGACTGAACTACACCGTGTTCATTGGAGAAACCCCGTGTGTGCTCACCCTGTCAGAGACGCAGCTTCTGTGCGAGTGGCCCAATCTCACCGGCCAGCACAAAGTCACTATTAAAGTGGGAGGTTTCGAGTACTCTCCTGGGACCCTGCAGATCTACTCTGACAGCCTGCTGACGCTGCCCGCCATTATAGGTATCGGCGGAGGAGGAGGCCTGctcctcctcatcatcatcatcgtcctCATCGCCTACAAGCGCAAGTCCCGGGATGCTGACCGCACCCTCAAACGCCTGCAGCTGCAGATGGACAACCTGGAGTCACGGGTGGCCCTTGAATGCAAAGAAGCATTCGCGGAACTGCAGACCGATATTCATGAGCTGACCAATGACCTGGATGGGGCTGGGATTCCCTTCCTTGATTACCGCACATACGCCATGAGAGTGCAGGCCAATGTTGAGAAGGCACTGAACTTGTTTGGGCAGCTGTTAAACAAGAAGCACTTCCTGTTGACCTTCATTCGCACACTAGAGGCCCAGCGCAGCTTCTCTATGCGTGACCGGGGCAACGTGGCCTCGCTCATTATGACCGCCCTGCAGGGAGAGATGGAGTATGCCACCGGTGTCCTCAAGCAGCTACTCTCTGACCTGATAGAGAAAAACCTGGAGAGCAAAAACCACCCCAAACTGCTGCTCAGGAGGACTGAGTCTGTTGCTGAGAAAATGCTGACGAATTGGTTTACTTTCCTACTTTACAAATTCTTGAAGgAGTGTGCTGGAGAACCCTTGTTCATGCTGTACTGTGCCATTAAACAACAGATGGAGAAAGGACCTATAGACGCTATCACAGGAGAAGCTCGGTATTCGTTGAGTGAAGACAAGCTTATCCGCCAACAAATCGACTACAAAACTCTGACTCTGCACTGTGTGAATCCAGAGAATGAGAACTCGCCCGAGGTCACAGTGAAAGGACTGAACTGTGACACGGTCACCCAGGTGACTGATGGGTCAGTAATCGCACTGGTACCAAAACAGAATTCAGCCTACAACATCTCCAACTCCTCCACTTTCACCAAATCGCTCAGTAGATACGAGAGCATGCTCCGTACAGCCAGCAGCCCAGACAGCCTACGGTCCCGCACCCCCATGATCACCCCTGACCTGGAAAGTGGCACCAAGCTGTGGCACTTGGTTAAGAACCATGACCACTCAGACCAGCGTGAGGGTGACCGTGGCAGCAAGATGGTCTCCGAGATATACTTGACACGGCTACTTGCCACCAAGGGTACGTTACAGAAATTCGTCGATGACCTCTTCGAGACGATATTCAGCACTGCCCACCGTGGCAGTGCCCTTCCCCTCGCCATCAAGTACATGTTCGACTTCCTGGACGAGCAAGCGGACAAGCACCAGATCAGTGATTCAGATGTGCGGCACACCTGGAAGAGTAACTGCCTACCTCTGCGTTTCTGGGTAAACGTGATAAAGAACCCCCAGTTTGTCTTCGACATCCACAAGAACAGTATTACAGACGCCTGCCTGTCAGTGGTCGCTCAGACCTTCATGGACTCCTGTTCCACATCAGAGCACAAATTAGGCAAGGACTCGCCTTCCAACAAGCTGCTGTATGCTAAAGACATTCCAAACTACAAGAATTGGGTGGAAAGAGCCATGGCCATAATTGGAGTTGCcattctgtgtctgtctccagAAGACAGAGGCAATAGGGAGGGAAGGTACTACTCGGATATCTCCAGAATGCCAGCCATCAGTGACCAGGACATGAGCGCATATTTGGCTGAACAATCACGGCTCCATCTGAGTCAGTTCAACAGCATAAGTGCTCTCCACGAGATCTACTCCTACATTGTGAAGTACAAAGACGAGATATTGTCTGCTTTAGAAAAAGATGAACAAGCCAGAAGACAGAGACTGCGGTGTAAGCTGGAACAAGTCATCGACACCATGGCCCTTGCCAGTTGA

Function

symbol description
plxna1 Predicted to enable semaphorin receptor activity. Predicted to be involved in several processes, including generation of neurons; regulation of GTPase activity; and regulation of cell shape. Predicted to act upstream of or within dichotomous subdivision of terminal units involved in salivary gland branching; neuron projection morphogenesis; and regulation of smooth muscle cell migration. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: plexin-A1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016955 True 3414 mRNA 0.51 23 37418427 37499161

Neighbor

gene id symbol gene type direction distance location
AMCG00016954 txnrd3,LOC100702976,LOC106511133 coding downstream 716445 36682750 ~ 36701982 (-)
AMCG00016953 LOC107715024,LOC107664194,LOC102787184 coding downstream 848416 36566281 ~ 36570011 (-)
AMCG00016952 NA coding downstream 1138750 36252375 ~ 36279677 (-)
AMCG00016944 lhfpl4,LOC107716887 coding downstream 1693394 35724533 ~ 35725033 (-)
AMCG00016942 NA coding downstream 1933531 35457197 ~ 35484896 (-)
AMCG00016957 plxna1,LOC106572368 coding upstream 36712 37535873 ~ 37569505 (-)
AMCG00016956 plxna1,LOC104944641 coding upstream 187854 37687015 ~ 37688235 (-)
AMCG00016958 tpra1 coding upstream 562912 38062073 ~ 38071943 (-)
AMCG00016964 NA coding upstream 592888 38092049 ~ 38114746 (-)
AMCG00016963 LOC108427613,LOC103025619,LOC104955611,LOC104930301,LOC103373509,LOC100704252 coding upstream 642600 38141761 ~ 38146133 (-)
G17021 NA non-coding downstream 3617 37414114 ~ 37414810 (-)
G16992 NA non-coding downstream 81317 37241759 ~ 37337110 (-)
G16988 NA non-coding downstream 222349 37195762 ~ 37196078 (-)
G16986 NA non-coding downstream 244264 37173881 ~ 37174163 (-)
G16979 NA non-coding downstream 709072 36709151 ~ 36709355 (-)
G17033 NA non-coding upstream 316416 37815577 ~ 37816017 (-)
G17039 NA non-coding upstream 359163 37858324 ~ 37858524 (-)
G17094 NA non-coding upstream 590518 38089679 ~ 38117255 (-)
G17140 NA non-coding upstream 826089 38325250 ~ 38326037 (-)
G17148 NA non-coding upstream 840414 38339575 ~ 38339875 (-)
AMCG00016938 NA other downstream 2019397 35395992 ~ 35399030 (-)
G16563 NA other downstream 3310486 34106690 ~ 34107941 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 3904848 33488725 ~ 33513579 (-)
AMCG00016889 LOC107570748,LOC106906011 other downstream 3983776 33391789 ~ 33434651 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 4239544 33176076 ~ 33178883 (-)
G17032 NA other upstream 258996 37758157 ~ 37758471 (-)
AMCG00016959 NA other upstream 376089 37875250 ~ 38058939 (-)
G17421 NA other upstream 3717490 41216651 ~ 41217231 (-)
AMCG00017014 NA other upstream 4437765 41936926 ~ 41938563 (-)
G17842 NA other upstream 5309550 42808711 ~ 42864616 (-)

Expression


Co-expression Network