AMCG00016959


Basic Information

Item Value
gene id AMCG00016959
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 37875250 ~ 38058939 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016959
ATGGGGGGCAGCGAGAGCACGACCAGGAAGGTGTCTTTTGGCATGGACGAGGAGGACAGGGTCAGGGTTTTGCATGGAATCAAGCTGTCGGAGGATGTCGTGAGACGAATGCAGGAACCCTCTTCTGACCCCAAGCCTTCAGCGCCAGAGAGCCCGTATGAACGAGAAAAGGCACTGGTCCAGGAGGAGCTGGCCCGGATTGCGCAGAAGGAGAGGGAGTCGGCGAGAGACGAGCTGAGTCTGGCTGTGCTGCGCGAGAGGGCGCACTCCCGCGAGGAGGCTGAGAGAGCCAAGACCCTG
>TU21143
TTTCATCTGGAGTGCAGAGTCGAGCACTAGATAGCTAACAATTGGTCACAGAAAAGGACAATACTGAAGTAAACGGGTCTCCTGTTCAAGAGTGTGAGCGACAGTGGTCTAGGGGCTGTGCTTTAGGCCTGGAACTGCAATGGGGGGCAGCGAGAGCACGACCAGGAAGGTGTCTTTTGGCATGGACGAGGAGGACAGGGTCAGGGTTTTGCATGGAATCAAGCTGTCGGAGGATGTCGTGAGACGAATGCAGGAACCCTCTTCTGACCCCAAGCCTTCAGCGCCAGAGAGCCCGTCCTCTCCCGCAGGCAGTGGACAACCGGGATCTCCAGGTTCAAAGACAAATTCAGGACACACTTTCACAGGGAAGGAGGAAGAACTGTACAGAAGGTATGAACGAGAAAAGGCACTGGTCCAGGAGGAGCTGGCCCGGATTGCGCAGAAGGAGAGGGAGTCGGCGAGAGACGAGCTGAGTCTGGCTGTGCTGCGCGAGAGGGCGCACTCCCGCGAGGAGGCTGAGAGAGCCAAGACCCTGGTGAGTTT
>TU21144
TTTCATCTGGAGTGCAGAGTCGAGCACTAGATAGCTAACAATTGGTCACAGAAAAGGACAATACTGAAGTAAACGGGTCTCCTGTTCAAGAGTGTGAGCGACAGTGGTCTAGGGGCTGTGCTTTAGGCCTGGAACTGCAATGGGGGGCAGCGAGAGCACGACCAGGAAGGTGTCTTTTGGCATGGACGAGGAGGACAGGGTCAGGGTTTTGCATGGAATCAAGCTGTCGGAGGATGTCGTGAGACGAATGCAGGAACCCTCTTCTGACCCCAAGCCTTCAGCGCCAGAGAGCCCGTCCTCTCCCGCAGGCAGTGGACAACCGGGATCTCCAGGTTCAAAGACAAATTCAGGACACACTTTCACAGGGAAGGAGGAAGAACTGTACAGAAGGTATGAACGAGAAAAGGCACTGGTCCAGGAGGAGCTGGCCCGGATTGCGCAGAAGGAGAGGGAGTCGGCGAGAGACGAGCTGAGTCTGGCTGTGCTGCGCGAGAGGGCGCACTCCCGCGAGGAGGCTGAGAGAGCCAAGACCCTGCCTGCAGATTTGGATGCCTGGG
>TU21147
AGAACATTGAGTATTACAAGCTGACATCTGAACAATTCCACGAGGCAGCAACCCAAGCAGAAGCTCACGTGAAGAAGAGGAGCGTTGAGCCGGTGTGTAGAAACCTGCAGGCGGAGATATTGCGGTGCTATCGAGAGAACAAGGAGCAGACGCTGCAATGCTCTGACCTGGCCAAGAAGTACATGCAGTGCATTAATGCTGCGAAAAAGAGCCTGCTGGTGAGTCACGGATGAAGCCTTGCCAACTCTGACCTGGGGTCCATATACTGGGAGCAGCTTTAAATGGGATGGAAATTGTTCGTTccaatgattattttaatttgtattgtgatGAGACATAGATTGTTAAAAGCATGCAACGACTTCCTTTTCTATTGGTTCGCTATTGTTTCAGGTTGCACTATACCCCTTTCAGGGGGAcactacaaagaaaaataattccttctaatcttgaaataaaatttgaagaaagaaaataaaaataaaatgtttctcagTACTTAAATATCAGGTGACTTGTAAATGACATTTGTTAGTTCACTCAACGTATTGCTTTATTAGCATTGACGCAAGTTGCaggttttttaaatttgatccCAAAGTGAAGTTATTTGTAAATGAGTTACACCtccacagattttgtttttaataactatAGTGAAGCTTTACAATTCCATAGtcatttttgaattattattattactattatgaacATTGGccttaatatataattatttccttttttcagtAAAGTACATTTTGATAGACCATtcctggttaaaaaaaacaaaacaggcagcTGTTTGCATGCTTAGATCAGTGGAATGAATCCTCACAGCTTTTGTCTGCAAGGAATTAATAAATCCAATTAATCACTGAAGTCTGTCAGGAACGAACACGTTTCTTAATGTTGTTTCAAGTGACTGTGCTTAGGATGCAGGTTTTAAAACTTATTACAGCGCATTGTCACAATGCCTCGCAGTAATTAAGAAACAATATGAAGCTGGCAAAGGTTTAATGCTTGatttatgtgtatatttcaTTCATCTGAGGggcaatttgaaaaacatgtccCATCTAAAGGAATCCCACAATCCTTGCActcatttaataaagcatttcttAAGGGATTTTTACACATTGTATACTTAATTATGTAGTGGCTCCGTGTAAgaagca

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03015 mRNA surveillance pathway
ko03420 Nucleotide excision repair
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016959 False 300 mRNA 0.61 3 38054673 38058800
TU21143 False 543 TUCP 0.56 4 38054665 38058939
TU21144 False 557 TUCP 0.56 5 38027483 38058939
TU21147 True 1178 lncRNA 0.37 3 37875250 37968168

Neighbor

gene id symbol gene type direction distance location
AMCG00016956 plxna1,LOC104944641 coding downstream 187015 37687015 ~ 37688235 (-)
AMCG00016957 plxna1,LOC106572368 coding downstream 305745 37535873 ~ 37569505 (-)
AMCG00016955 plxna1,LOC106572368 coding downstream 376089 37418427 ~ 37499161 (-)
AMCG00016954 txnrd3,LOC100702976,LOC106511133 coding downstream 1173268 36682750 ~ 36701982 (-)
AMCG00016953 LOC107715024,LOC107664194,LOC102787184 coding downstream 1305239 36566281 ~ 36570011 (-)
AMCG00016958 tpra1 coding upstream 3134 38062073 ~ 38071943 (-)
AMCG00016964 NA coding upstream 33110 38092049 ~ 38114746 (-)
AMCG00016963 LOC108427613,LOC103025619,LOC104955611,LOC104930301,LOC103373509,LOC100704252 coding upstream 82822 38141761 ~ 38146133 (-)
AMCG00016962 NA coding upstream 90566 38149505 ~ 38163660 (-)
AMCG00016961 NA coding upstream 112213 38171152 ~ 38174324 (-)
G17039 NA non-coding downstream 16726 37858324 ~ 37858524 (-)
G17033 NA non-coding downstream 59233 37815577 ~ 37816017 (-)
G17021 NA non-coding downstream 460440 37414114 ~ 37414810 (-)
G16992 NA non-coding downstream 538140 37241759 ~ 37337110 (-)
G16988 NA non-coding downstream 679172 37195762 ~ 37196078 (-)
G17094 NA non-coding upstream 30740 38089679 ~ 38117255 (-)
G17140 NA non-coding upstream 266311 38325250 ~ 38326037 (-)
G17148 NA non-coding upstream 280636 38339575 ~ 38339875 (-)
G17149 NA non-coding upstream 281444 38340383 ~ 38340835 (-)
G17164 NA non-coding upstream 326882 38385821 ~ 38386161 (-)
G17032 NA other downstream 116779 37758157 ~ 37758471 (-)
AMCG00016938 NA other downstream 2476220 35395992 ~ 35399030 (-)
G16563 NA other downstream 3767309 34106690 ~ 34107941 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 4361671 33488725 ~ 33513579 (-)
AMCG00016889 LOC107570748,LOC106906011 other downstream 4440599 33391789 ~ 33434651 (-)
G17421 NA other upstream 3157712 41216651 ~ 41217231 (-)
AMCG00017014 NA other upstream 3877987 41936926 ~ 41938563 (-)
G17842 NA other upstream 4749772 42808711 ~ 42864616 (-)
AMCG00017051 NA other upstream 4890052 42948991 ~ 42974433 (-)
AMCG00017061 NA other upstream 5221298 43280237 ~ 43286603 (-)

Expression


Co-expression Network