AMCG00016962


Basic Information

Item Value
gene id AMCG00016962
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38149505 ~ 38163660 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016962
TTAAAGCAGGGGCCTGCCCCCTTTTCCCTTCTCTGTCAGCCCCAAATGAGGGTCCCTTTGCCAAGGCAGTGTGGAGAGCACTGCCAGGGGTCCACAGCAGAGGGATAAAGCAAGGAAGCAACATGCAGTGTCTTCAGCCTCCAGCCCAGGCACATTTGAAATTGTCCCCAAAATCGAACCTTGCTCCTTCATCAGAATCCCTGCTGAGAGATCCACATGCCTGGGATGACATTGAGAGGCTGCTGGCCACGGGTGGAGATGACAACCTGACACAAGAGGACTCAAGGGAATACTGTTACGGGGGATACCATCCAGTGAAGATAGGAGATACTTTCAACAGACGATACCAAGTGCACAGAAAGCTGGGATGGGGTTACTTCTCCACTGTCTGGCTTTGCAATGATCTACATAAGAAGCGCCTTGTAGCTGTCAAGGTGTCAAAGAGTGGAGCTGGCTTCACACAAGCAGCACAGGATGAGTTGGCGTTGTTGCGATGTGCTTGGGGATCCAACAAAAAGCATCTTTACAGCCGGCACATTGTGGAACTGCTGGACGAATTTAAACTGGTGGGGGAGAATGGGATCCACATGTGCTTGGTGTTGGAGTTTCTGGGGAGGGATCTCCACAGTTACATGCTCAGCTGTGGCACTCCTGGGCTTCCACTCTCTTTGGTTCTCCAAGGGCTGGCTTATCTTCACAATCAGTGTCAGATCATCCATACTGACATCAAGCCAGAAAATATACTGCTGAAGGTTGGGGAGTACTGCCTGAAACAGACAGAAGGGGGAGCTGTCAATTTCCAGCCAGGAGGAGACCAGACAATAGGCCACACAGATGTGGATCATTGTGGTAATCTACTGATTAACCCTGTGCAGTCTGCGACAACCGAGGACATAAAAGTGAAAATTGCAGATCTTGGAAGTTCCTGCTGGGTGTATAAGCACTTTTCTGATGAGATCCAGACTCGACAGTATCGATCTCTAGAAGTGCTGATTGGTTCTGAATATGGTCCTCCGGCAGATATTTGGAGCACAGCGTGCATGGCTTTTGAGCTGGCAACTGGAGATTCCTTGTTCGAACCAAAAGCTGGGAAGTCATACTCAGTGGAGGAAGATCACCTCGCTCACATCATTGAGCTTCTGGGAAAAATCCCAGCAAAACTTGTTCTTTCGGGCAAATACTCAAGagaatattttaacaataaagGGGACCTCCGACGAATTCGAGGGTTACGGCCCTGGAGTCTGTATGAGGTCCTGGTGGAGAAATATCACTGGGGGCTGATGCAGGCCACACTCTTTGCTGACTTCCTGCTCCGGATGTTGATGTTCACCCCCGAGCGCAGGGCCACAGCTGACCAGTGTCTCACGCACCCCTGGCTTACCTCCTGAAAATCTCTCAAACTGTGCCTGCCCCAGAAACTTGCTGATGCCAATACCTTTCAGATTGTATTCACACCCCACTTCATCAAGGGGAGGCCTTCTAAATGATCACACGCTCTTTCGATTCAGTACTTGAAATGCATCTCACTTGTGTTTGAGCCCATGCCTGCCTAGCCCACCCAAAGCCTGAAACTTGTGTTCTTGACAGCCTGGATTGCTGATTAGTTGGCGTGCTACAAAAAGAGTGTGAAGGATGGAAGCTTATAACATGAAACTCTGAAGCACATTCATTATGAGAAAGTGAGAAATGTATTTAGCCTAATGCCTACATGTGTCAGGTTTGTATATTAATCAAGAAATGATTATCAGATAGCAATGACATTTGTCTTTGTGCAGAGGCTTACATTCACTTAATCTGctgaatattattaatttattccagCTTCGTGGTTACCTTAAGAACCATGGACGGTCTCAGCTCTCCTGATATTACGAAATCATGTTACCAAATATGCTAGAACGGTGATACAacagataatacaaatatggGTGGAGATGTATGGAGGTGGGCTGGACTTGTGCATGCTATGCCAACAGCAAAGGAAATGCAACAGGATTTTTCCACAATGGGCAGGTAGGATACAAGTGAAGATGGATGTGTAAATTAATGCTACAGTGTTACAGGCAAGTGATGATAAAGTATTGTATAATTGGAGGTGCCTTATAAAGATTATAaggcaaacaattaaaaagaaacattgacCACTCATGCTTTTATATAgacaatgtgcaataaaatgCCTCAAGTGTGGCTCACTGTACAGGTGGTGTTTTCTGGTAGGGGTATAGAATGTCACTGACTGTGGTGACtgacatttaaaactgaagagCAGCTGCAGCTTTTAATTTGGCATCGTGTGGGAACAAATAAGGGGAAATGATTCACCTGGAGAGAGAGTgaagcaagagagagggagagagactgacaAAATCTTGAGTATGTGATTGTGTGAAGAATTCCTCTCCTCTTTCCTGCCAAGTAAATCAGTTTCCCACCTTTTCCTCACAGATCGCTGATAAACCTATACAAACTGTTTCAGCTGTTCTACAGTTTGAAGTGGCTGTCCCCTCGAATCAGTGTAATTCTTTACTTTTCACAGAAAACATAATTCCAGTAGttgaataatcaataataattaccAATTCCAAAATAGAGTGCAAAATAACATGATCAAATAGAGGTGCTGttaccaaatgtatttttgtgactAATTGATGTGGTTACTCAGGAACCCAAAGAGTAGACTTGTTAGCAGCAGAATACCCACAGGCAGTCGTAACCGGTGCtacatataatattttaacatacaaCAACTGTTAATGGGTGTCTTACAGAATTACAAGTCGTTCTGCAATCCTATCTGTTCCTGGTCTCAACGTTATGTTGCATTTCACTCTTGAGAAACACTAAACTGGGTTGCATATTTCCAAATCAGACTGTAAATAGTGTGGTTGGTGCTGTTTTTATACTGGATTGCTGTTGTTTAATCCTGAGCATGAATCCCTGGAATAGTTCTTGCAAGGAATACTGTATACCAACTTCctttttttctatcttttttttgttttgtatcctaTTCTTTGTGTCCTCCCTGACTCTGTCATTTGCTATACAATAAAGTGTCTACTGGTTTCAGTTTTGCCCTGTTTAATGAAGGCATTCTGAATCACAtctttgtgtgcatgtttaaatATCTACAGTATACTGcatctaaaaatgtaaaatatgttta

Function

GO: NA

KEGG:

id description
K08832 SRPK3, STK23; serine/threonine-protein kinase SRPK3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016962 True 3175 mRNA 0.44 12 38149505 38163660

Neighbor

gene id symbol gene type direction distance location
AMCG00016963 LOC108427613,LOC103025619,LOC104955611,LOC104930301,LOC103373509,LOC100704252 coding downstream 3372 38141761 ~ 38146133 (-)
AMCG00016964 NA coding downstream 34759 38092049 ~ 38114746 (-)
AMCG00016958 tpra1 coding downstream 77562 38062073 ~ 38071943 (-)
AMCG00016956 plxna1,LOC104944641 coding downstream 461270 37687015 ~ 37688235 (-)
AMCG00016957 plxna1,LOC106572368 coding downstream 580000 37535873 ~ 37569505 (-)
AMCG00016961 NA coding upstream 7492 38171152 ~ 38174324 (-)
AMCG00016967 NA coding upstream 18642 38182302 ~ 38219837 (-)
AMCG00016968 NA coding upstream 196874 38360534 ~ 38371250 (-)
AMCG00016969 NA coding upstream 342496 38506156 ~ 38513767 (-)
AMCG00016977 LOC108436697 coding upstream 658448 38822108 ~ 38893519 (-)
G17094 NA non-coding downstream 32250 38089679 ~ 38117255 (-)
G17039 NA non-coding downstream 290981 37858324 ~ 37858524 (-)
G17033 NA non-coding downstream 333488 37815577 ~ 37816017 (-)
G17021 NA non-coding downstream 734695 37414114 ~ 37414810 (-)
G16992 NA non-coding downstream 812395 37241759 ~ 37337110 (-)
G17140 NA non-coding upstream 161590 38325250 ~ 38326037 (-)
G17148 NA non-coding upstream 175915 38339575 ~ 38339875 (-)
G17149 NA non-coding upstream 176723 38340383 ~ 38340835 (-)
G17164 NA non-coding upstream 222161 38385821 ~ 38386161 (-)
G17166 NA non-coding upstream 228010 38391670 ~ 38392072 (-)
AMCG00016959 NA other downstream 90566 37875250 ~ 38058939 (-)
G17032 NA other downstream 391034 37758157 ~ 37758471 (-)
AMCG00016938 NA other downstream 2750475 35395992 ~ 35399030 (-)
G16563 NA other downstream 4041564 34106690 ~ 34107941 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 4635926 33488725 ~ 33513579 (-)
G17421 NA other upstream 3052991 41216651 ~ 41217231 (-)
AMCG00017014 NA other upstream 3773266 41936926 ~ 41938563 (-)
G17842 NA other upstream 4645051 42808711 ~ 42864616 (-)
AMCG00017051 NA other upstream 4785331 42948991 ~ 42974433 (-)
AMCG00017061 NA other upstream 5116577 43280237 ~ 43286603 (-)

Expression


Co-expression Network