AMCG00016966


Basic Information

Item Value
gene id AMCG00016966
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38321965 ~ 38336646 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016966
TGTGTATGAGGGTGTCGGCTCGTTGCCAGTTATTGGAATTGGAAGGTGGGATGTGTGTAAACCACGTGATCAGGAGAGAGGTGTGTAAAGTGGGCGTAACTTTGTAGTTACCTTTGCGTGACATTGTACTGCAGACTACTCTCTGCGTTTTACACTGAACCGGAGCAAGCAGGCTGACTGTCAGCAACCCAGTCTGAGCTAATAGGAAACCCCAGTGCAAGATGGCAACGCCAGTGAGACCCGGGTTTCACAGAGAAGAGATTCAGAAGACGACCTGGGAAGTGCCAGCGAGGTACACAGGACTGATACCGGTCGGGTCAGGAGCTTACGGAACAGTCTGGTGATCTCTCTGCTGGATGTCTTCACACCTGATATGTCCTTGGATAAATTCCAAACCTTctaCATTGTGATGCCTTTTGTAGCACAAGACCTGAGCCACATTATGAAAAAAGGCATGTTGAGTGATAAGGTCATCACCTACCTGTTCTACCAAATAGTCCGTGGGCTGAAGTATATTCACTCTGCGGGTATCGTGCACAGGATTCTGGATTTTGGACTGGCGAGACATACTGAAAGTGAGATGACAGGGTACGTGGTGACCCGCTGGTACAGAGCTCCAGAGATTGTCCTTAGCTGGATGCACTACACCCAGACAGATATTGACCAGCTGAAGAAAATATTGAGGTTAACAGGAACCCCCCATTCATCCCTGGTGGAGAAGATGCAGAGCAAAGATGCAAAACAGTATGTCCAGTCTCTCCCTCACCAAGAAAAGAGGAATTTCAGGGAGGTGTTTCCAGCCATGGGCAAGAacaCAGTAGATCTGCTGGAGAAGATGCTGATATTGGACCCAGACAGGAGGGTGACAGCCAAAGAAGCCCTGTCTCACCCTTATGTAGCGGAGTTCCATGACATCGAGAGTGAGACGGAGTCCCCGCCCTATGACGATTCCTTTGAGAGTATGGAGCTGGCTGTGGGAGAGTGGAAAAatGTTTGCAAAAAAGCTTGGTGGCTATTGTGGTGTGCAGCCAACTCGTCTCAACTTAAGTTCTATGAGCGTTAG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0023014 signal transduction by protein phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016966 True 1063 mRNA 0.49 9 38321965 38336646

Neighbor

gene id symbol gene type direction distance location
AMCG00016960 NA coding upstream 234429 38085290 ~ 38087536 (+)
AMCG00016951 LOC105894324,LOC105023857,LOC106566981,LOC103373809 coding upstream 1761984 36533936 ~ 36559981 (+)
AMCG00016950 NA coding upstream 1797334 36501049 ~ 36524631 (+)
AMCG00016949 NA coding upstream 2020072 36299372 ~ 36301893 (+)
AMCG00016947 NA coding upstream 2069750 36241389 ~ 36252215 (+)
AMCG00016965 NA coding downstream 999 38337645 ~ 38351463 (+)
AMCG00016970 NA coding downstream 59053 38395699 ~ 38399287 (+)
AMCG00016972 mcm2,LOC106583719 coding downstream 64084 38400730 ~ 38415204 (+)
AMCG00016975 NA coding downstream 111962 38448608 ~ 38454664 (+)
AMCG00016974 podxl2 coding downstream 131504 38468150 ~ 38471891 (+)
G17089 NA non-coding upstream 186125 38135173 ~ 38135840 (+)
G17073 NA non-coding upstream 204710 38089801 ~ 38117255 (+)
G17064 NA non-coding upstream 229286 38062034 ~ 38092679 (+)
G17044 NA non-coding upstream 335308 37948232 ~ 37986657 (+)
G17006 plxna1 non-coding upstream 866564 37455176 ~ 37455401 (+)
G17165 NA non-coding downstream 55031 38391677 ~ 38392072 (+)
G17214 NA non-coding downstream 199415 38536061 ~ 38536333 (+)
G17221 NA non-coding downstream 288880 38625526 ~ 38626023 (+)
G17230 NA non-coding downstream 417875 38754521 ~ 38805946 (+)
G17274 NA non-coding downstream 742769 39079415 ~ 39079897 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 3117733 35158597 ~ 35204232 (+)
G16550 NA other upstream 4221102 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 4222369 34093276 ~ 34099596 (+)
G16546 NA other upstream 4274245 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 4647604 33668593 ~ 33674361 (+)
G17193 NA other downstream 159405 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 902427 39239073 ~ 39254490 (+)
G17697 NA other downstream 4054651 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 5789568 44126214 ~ 44137931 (+)
G18192 NA other downstream 6318006 44654652 ~ 44656098 (+)

Expression


Co-expression Network