AMCG00016970


Basic Information

Item Value
gene id AMCG00016970
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38395699 ~ 38399287 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016970
AGGACCCCAGGCTGAACCGGAAGTAGCTGTCTATAACCCGCCCGAATGAAAGTCTCCCAGCCGGCGCCACTGACAGCGATATTTTTATAGATACTTGGACCCTGAAGGATCATTTTGAGGTGTCAGTGGTCCCCCTGGTCTATACTTGGCTTGAGTTGCAGCCTTCAATGAGGTACAGAGGGGACTTGCTCACAGTGAGGTGTGGGACTCGTGTTTACCTTGCTCTGCTCTCGGGGAAGCCCAGGCCAGATGTCTGTGCCATTCGCTTTTATTGTACCCAGGGCCCAAAGGAGTCGGACAAAAACCTGGCTCTGCAGCAGCAGGCTTTGACCAGCTTGCACAGGCTGACTGCTTTGGGCAAACAGTGGGGGCAAAGCTCTTCCCAGAAAGCGTCATCCACTGTCAACTACTGGTGGCAGAAATACGAGGAGTTTGTGGGTCTGAATGAAGTCCGTGACGCACAAACAAAAGTCACAGAGGCTGAAAAGGCTTTCATGGTGGCCAGAGGGATAGTGCGGGAAGCCCATGAGAGCCTGGAGGCCTTGCAGGTCCGGCTGAAGGAGGTGAGGGACAGGCTGGACCGCGTGTCCAGGGAAGAGGCACACTACCTGGAACTGGCCACACTGGAGCACAAGCTACTGCAGGAGGAGCGTCGGCTCCGCACGGCCTACATCAAAgcagaggagggggagagggagaagttTGCCCTCTTTTCGGCTGGAGTGCGGGAGAGCCACGAGAAAGAGCGCACCAGGGCAGAGAGAACGAAAAACTGGTCTGTTATCGGCTCGGTGCTGGGGGCCCTGATCGGAGTACTGGGCTCCACTTACATCAACAGGGTCCGTCTGCAGGAGCTGAAGAGCTTGCTCCTGGAAGCCCAGAAGGGACCTATCAGCCTGCAAGAAGCTATGAAAGTGCAGGCCAGCATGCATCACTCTCAGCAGGAGGAGCTCAGTGGGCTCATCAACACCCTGAGGGGCTCTCTGCAAGAAGGAAGCCCACAGAGCACAGTCGCCCCAGTTACCCCCACCAAGGCCCTCCCGAGCAGTGTCTCCGAGTCAGCCCTGAAGGAACAGCTGCTTTCTAGTAAGAAGATCCAGGCTTTGATGGAAGGCCTCCAGCCTCAGTTAACAAAGCTGGAGCAAAACATAGGGAAGGTTGCGTCTGAGCTCCAAACAGTCAAGTTGTCTGTCAGGTCTCATGCAGCAGAAAAGCCTGCACTCAGTGCCCAGGACATGCACATCTACGATAAGGAGGGCGTTATGCTGGGATTGGCCCAAGCAGAAAAGAGACTGGAGACACGGATGAACAAGAACGCACTTTACAGCACCGTTCTGACCTATTCTGCCTTTGCCCTGACTCTTCCTGTACTATATTTGATCTTTAAAGCCAATTAACAATCAGTGACAGAGAGCTCTAAATGGTCCATCTTCATATGTATTCCCTTTGTCATGAACCTGCTTAGTTGTTATGTGGGTACTGAACAAAACTAGATTCAGccttaaatattttcaattctCCAGACCTATTGGTACAGGCCTGATGCCTGGAAACACTGTTTTATCATGCTGATAATAAAAGTGGAAAATAAGAtttattgtgtatataaaacaatgacatGAGTATGAATGCAAGGTTTTAACACTGAGTGGATTAAGCACTGTATCATATGCaaagggctctggactcctgagtggagggccgtgggttcaatcccaggtgggggacactgctgttgtacccttgagcaagggactTTATcttgattgctccagtaaaaacccagctgtataaatctGTCAttatatgtaaacaaattatgTGATATAGTGTAAAATTGTAAGTTTCCCtggctaagaaatataattataataatgtacatgGGAA

Function

GO:

id name namespace
GO:0016741 transferase activity, transferring one-carbon groups molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016970 True 1887 mRNA 0.50 4 38395699 38399287

Neighbor

gene id symbol gene type direction distance location
AMCG00016965 NA coding upstream 44236 38337645 ~ 38351463 (+)
AMCG00016966 NA coding upstream 59053 38321965 ~ 38336646 (+)
AMCG00016960 NA coding upstream 308163 38085290 ~ 38087536 (+)
AMCG00016951 LOC105894324,LOC105023857,LOC106566981,LOC103373809 coding upstream 1835718 36533936 ~ 36559981 (+)
AMCG00016950 NA coding upstream 1871068 36501049 ~ 36524631 (+)
AMCG00016972 mcm2,LOC106583719 coding downstream 1443 38400730 ~ 38415204 (+)
AMCG00016975 NA coding downstream 49321 38448608 ~ 38454664 (+)
AMCG00016974 podxl2 coding downstream 68863 38468150 ~ 38471891 (+)
AMCG00016973 NA coding downstream 80045 38479332 ~ 38492044 (+)
AMCG00016971 lsm3,LOC107562728,LOC107676354,LOC100705055 coding downstream 113933 38513220 ~ 38524777 (+)
G17165 NA non-coding upstream 3627 38391677 ~ 38392072 (+)
G17089 NA non-coding upstream 259859 38135173 ~ 38135840 (+)
G17073 NA non-coding upstream 278444 38089801 ~ 38117255 (+)
G17064 NA non-coding upstream 303020 38062034 ~ 38092679 (+)
G17044 NA non-coding upstream 409042 37948232 ~ 37986657 (+)
G17214 NA non-coding downstream 136774 38536061 ~ 38536333 (+)
G17221 NA non-coding downstream 226239 38625526 ~ 38626023 (+)
G17230 NA non-coding downstream 355234 38754521 ~ 38805946 (+)
G17274 NA non-coding downstream 680128 39079415 ~ 39079897 (+)
G17361 NA non-coding downstream 1390802 39790089 ~ 39790567 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 3191467 35158597 ~ 35204232 (+)
G16550 NA other upstream 4294836 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 4296103 34093276 ~ 34099596 (+)
G16546 NA other upstream 4347979 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 4721338 33668593 ~ 33674361 (+)
G17193 NA other downstream 96764 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 839786 39239073 ~ 39254490 (+)
G17697 NA other downstream 3992010 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 5726927 44126214 ~ 44137931 (+)
G18192 NA other downstream 6255365 44654652 ~ 44656098 (+)

Expression


Co-expression Network