AMCG00016971 (lsm3,LOC107562728,LOC107676354,LOC100705055)


Basic Information

Item Value
gene id AMCG00016971
gene name lsm3,LOC107562728,LOC107676354,LOC100705055
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38513220 ~ 38524777 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016971
ATGCAATCAGCACATGCAATTCATCGCACATTTCCTTTGGTTTGCAGCAGGTAGGAGGGGAGGTACTTCAGCTCTCAGTAAAATCACAGATTGTTCTGGAAATTAAACCGTTCAAGCCTGTGGAACAAGTATACAAAGCTTTGTCGTGTCACCCAGCAGATTCCCAACACATCCAGCTTCCAGAAAGTTATCCTTTTGAAAAACAACTTGTATGCACTTCACTGCAGCTGGTAAATGTTACATAATATCCAGCCGCAGTAAAGACGACACCGCACTGTTCTACAATCAATGATAATGACACCAGCAGAGACGCAAACGCCGCACAAAACGGCAAGGCGTATCATCATGcaacagacGTCCAACACTGTGGAGGAGCCGCTGGACCTCATCAGACTGAGCCTGGACGAGCGGATCTATGTGAAGATGCGCAATGACAGGGAGCTGCGGGGCCGGCTGCATGCTTATGATCAGCATTTGAACATGATATTGGGGGATGTGGAAGAGACCGTGACCACAGTGGAGATTGATGAGGAAACTTATGAGGAAATCTATAAaTCCACAAAGAGGAACATCCCAATGCTGTTCGTTCGGGGAGATGGAGTAGTATTGGTTGCTCCTCCACTGAGAGTTGGCTAGACCTACAAGCACTAGAAGAGAACACACTTGAGACTCCACATTATACACACGTTTTTATTTGGACTTACTTCCCCAGCGGAAACAtggatcttttatttttttctcagctTTGGACAAAACACAGATGAAGATGGAAGTGGAGACACTTTTCTTTTATCTCCTCAGGTTCAATGTAAAATACCTTAGTTTTTTGCTAGAATAAGAATTTgagtttgtggttttattttattttttgtattttagagcTAACTAGATAGAACGGTAGTTTttcctcatgttttttttttggtcagatGGAAATGAACTAATTTGTGTGCAAATGGTTTGGAAAATAATGCTTATAAACATTTCTGTTCCATTCACCTTGGTGTCCTTATGCTTTAATTTCCTATCATGATGTTATTGTAAAACTTGGAAAAAATGTGCTATGGCTTATTTGAAATggatttaagttatttttttatttatttaatttagtatagGTTGTTTCAGGAGTATAATAATGAGTTAACATGATCTTTCCTATACTGAGATGCTTCTACAGTAGGTCAAGTGCTGGAGAGTCATAAACTAAGAGTCTCTCGGCAATGCGTTGTCTGGACACCAAATAATCGGCCCCTCCAAAACCATCTGAAGAGGAACAAATATTAAAGGCAGTATCTTTCGATAGTCTTCAATATGTTGCTTTCAAAATTAAGATGCAAGCACTGGCTGTGACAGTAAATAAATGGTTTGAGATCTTATTAATAGTCATAGGGCAATGGCTTGTCTAAGGCTAGTTACAGAGTCTGtg

Function

symbol description
lsm3 Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA splicing, via spliceosome and nuclear-transcribed mRNA catabolic process. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex.

NR:

description
PREDICTED: U6 snRNA-associated Sm-like protein LSm3

GO: NA

KEGG:

id description
K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016971 True 1429 mRNA 0.40 4 38513220 38524777

Neighbor

gene id symbol gene type direction distance location
AMCG00016973 NA coding upstream 21176 38479332 ~ 38492044 (+)
AMCG00016974 podxl2 coding upstream 41329 38468150 ~ 38471891 (+)
AMCG00016975 NA coding upstream 58556 38448608 ~ 38454664 (+)
AMCG00016972 mcm2,LOC106583719 coding upstream 98016 38400730 ~ 38415204 (+)
AMCG00016970 NA coding upstream 113933 38395699 ~ 38399287 (+)
AMCG00016976 slc6a6,LOC106566182,LOC105006920 coding downstream 261573 38786350 ~ 38800821 (+)
AMCG00016981 NA coding downstream 746496 39271273 ~ 39294718 (+)
AMCG00016980 NA coding downstream 780503 39305280 ~ 39323121 (+)
AMCG00016983 NA coding downstream 850483 39375260 ~ 39396596 (+)
AMCG00016982 NA coding downstream 874980 39399757 ~ 39429289 (+)
G17165 NA non-coding upstream 121148 38391677 ~ 38392072 (+)
G17089 NA non-coding upstream 377380 38135173 ~ 38135840 (+)
G17073 NA non-coding upstream 395965 38089801 ~ 38117255 (+)
G17064 NA non-coding upstream 420541 38062034 ~ 38092679 (+)
G17044 NA non-coding upstream 526563 37948232 ~ 37986657 (+)
G17214 NA non-coding downstream 11284 38536061 ~ 38536333 (+)
G17221 NA non-coding downstream 100749 38625526 ~ 38626023 (+)
G17230 NA non-coding downstream 229744 38754521 ~ 38805946 (+)
G17274 NA non-coding downstream 554638 39079415 ~ 39079897 (+)
G17361 NA non-coding downstream 1265312 39790089 ~ 39790567 (+)
G17193 NA other upstream 9588 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 3308988 35158597 ~ 35204232 (+)
G16550 NA other upstream 4412357 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 4413624 34093276 ~ 34099596 (+)
G16546 NA other upstream 4465500 34047371 ~ 34047720 (+)
AMCG00016979 NA other downstream 714296 39239073 ~ 39254490 (+)
G17697 NA other downstream 3866520 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 5601437 44126214 ~ 44137931 (+)
G18192 NA other downstream 6129875 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 6424257 44949034 ~ 44961601 (+)

Expression


Co-expression Network