AMCG00016973


Basic Information

Item Value
gene id AMCG00016973
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38479332 ~ 38492044 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016973
TTTTAGTCGGAAATCCCACAATCAGCTGGTTGCAGAGACGATCCGAGATCCACGAAAATAACGCCAGACGTTTTGCTTATACAGTGCAGAAATAACGGGCTGCATTCATTCCCGATTAACAGGGCGCTGGCCGGTTCAATGCATTTCAGGGGACTGAAATCTCTCTGGAGATGGACACAAATGATTTGTTTACAAGCTGCAGAAAGGGCGACATTTCTAGAGTGAGGTACCTTGTTGAACAAAGAGATGTGGAACTAAATGTAAGAGATAAATGGGACAGTACCCCATTTCCCATGTTTGGGTCTGGGGCACAGCTACACAAGCTACACTGTCTGTGCTCCATGAGGGATATGAGTAGGGCAAAGTGCGAGGCCAACACGTTTGATGGAGAGCGCTGTTTGTACGGAGCCCTGAGCGACACCATTCGGAGATTACTCAAGGAGTACAAGCGCATCACTGCTAAGGGCATGCAGAGGGATTACTATGATGACTTCCTGCAGAGgCTGCTGGAGCAGGGTTACTACAGTGACATAGTGTTCATCGTACATGGTGAATCCTTCAGTGCACATCGCAGCATCCTCAGTGCACGCTCAGAGTACTTCACTGAGATGTTCGAGACCAAATGGAAAGGGAAAAACATAATCGCCCTTAAGCACCCGCTGATCAATCCTGCAGCTTTTGGTTCCCTCTTGCAATACTTCTACACTGGGCGGTTGGATATTGATGTGGGCTATGTGGAGGACTGTAAGAGATTAGCCAAgcagtgcaaaataaatgaccTCATAGAGGAGCTGGAGAACAAGTGCAAACAAGTGTATGAATTTGTGTCTTCTAAGCCGGGTACCTGTGTAAAAGTCCTGACACTGGAACCCCAGAATAACCTTCAGTTGCAGGAGGATCTGGCTATACTAGCAGACTGCGCCTTACCTCCTGAGCTCAGGGTGTTTTTCTGTGGCCGAAGCGATTATTTCAAGGCCCTGTTGGAAGATCACTTCAGCGAGAGCGAAGTTCTGCAGTCTCAACCCACCACCCCTGTGCTCACCCTGCACAACATCTCTGAAGACATCTTCAGCAGAGTGCTCTACTACATTTACAGCGATGACACGGAGCTGTCTCCAGAAAATGTGTACGATGTGCTGTGCGTAGCTGACATGTACCTGCTGCCAGGGCTGAAGAGACTGTGTGGCAAAACCCTGGCCCTGACCCTCAGTGAGGAGAACGTCCTCAACATCTGGAAGACTGCCAAGCTCTTCCGTCTTTCCCGCCTGGAGGACCAGTGCACTGAGTACATGGCCAAGATCATTGAGAAGCTAGTGGAATTGGAGGAGTTTGCAGAGTTGATTAAGGAGGATGCCAGTGCAGTGGAAGCCAGGCAGGAAACGGACTCCATCCCCCTGGTTGACGAAATCCGGTTCCACATCACCAGCAATGTCCAGACCTACAGTGCCATTGAGGAGGCCAACCAGAGACTGGGAgtgctggaggagctgctggtGAGCATTGGGCTGGAATGCTAGAGACTAGGGGCTTCAGAGTTCCCCTGACCCAAAAATGTGTTCCACTGGGACGCAACTCCCAGCCGACTGTGCAAGATGGTCCGCCCCttcactccacactgctgctgatCATCTTTTTACCTCTCTCAAGACAGATGCCTCTCTACCCTTGTCAGTCACTTGTCATTTCTCGCTCACTAAGCATGAGGATAACAAACATTATTTGGTTACAGATCCCCtttcagctgctgcaggagTTGAAATTCAGTCCATTCTAATGTCAGTCAAAGGTCATGGGTCAATTCCCCCATGGAAATGAAAGCATTAACACCATAATGTGTGTTTCATATCTCTGCATATGATTTAATAGTCCCCTGTCTCTGATCTGATCAAATTCAGATGTCCTATTTTGAGCAAAGTTCCATTCCGTTCAGTTGGCAGTGACTAAATAAAGAATTATAGGAAACCAAGCTTCAAAGTCACAGCCTGCCTGTGCAATTCACTAGTCTGCGTAATGTGTTCTGCAACAATGTATCCACGATCTCCCATTagaaagttatttaattttaacccaCGATGGCTCATTCCTACAAAAGGCATGCAGAGATTATGAACTTCCCAATATTGCAGCTTGCAGttcatatgcatttttttttgttttgctctttttgcctgtgggggggggggggggg

Function

GO: NA

KEGG:

id description
K10520 ABTB1, BPOZ; ankyrin repeat and BTB/POZ domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016973 True 2188 mRNA 0.48 11 38479332 38492044

Neighbor

gene id symbol gene type direction distance location
AMCG00016974 podxl2 coding upstream 7441 38468150 ~ 38471891 (+)
AMCG00016975 NA coding upstream 24668 38448608 ~ 38454664 (+)
AMCG00016972 mcm2,LOC106583719 coding upstream 64128 38400730 ~ 38415204 (+)
AMCG00016970 NA coding upstream 80045 38395699 ~ 38399287 (+)
AMCG00016965 NA coding upstream 127869 38337645 ~ 38351463 (+)
AMCG00016971 lsm3,LOC107562728,LOC107676354,LOC100705055 coding downstream 21176 38513220 ~ 38524777 (+)
AMCG00016976 slc6a6,LOC106566182,LOC105006920 coding downstream 294306 38786350 ~ 38800821 (+)
AMCG00016981 NA coding downstream 779229 39271273 ~ 39294718 (+)
AMCG00016980 NA coding downstream 813236 39305280 ~ 39323121 (+)
AMCG00016983 NA coding downstream 883216 39375260 ~ 39396596 (+)
G17165 NA non-coding upstream 87260 38391677 ~ 38392072 (+)
G17089 NA non-coding upstream 343492 38135173 ~ 38135840 (+)
G17073 NA non-coding upstream 362077 38089801 ~ 38117255 (+)
G17064 NA non-coding upstream 386653 38062034 ~ 38092679 (+)
G17044 NA non-coding upstream 492675 37948232 ~ 37986657 (+)
G17214 NA non-coding downstream 44017 38536061 ~ 38536333 (+)
G17221 NA non-coding downstream 133482 38625526 ~ 38626023 (+)
G17230 NA non-coding downstream 262477 38754521 ~ 38805946 (+)
G17274 NA non-coding downstream 587371 39079415 ~ 39079897 (+)
G17361 NA non-coding downstream 1298045 39790089 ~ 39790567 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 3275100 35158597 ~ 35204232 (+)
G16550 NA other upstream 4378469 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 4379736 34093276 ~ 34099596 (+)
G16546 NA other upstream 4431612 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 4804971 33668593 ~ 33674361 (+)
G17193 NA other downstream 4007 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 747029 39239073 ~ 39254490 (+)
G17697 NA other downstream 3899253 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 5634170 44126214 ~ 44137931 (+)
G18192 NA other downstream 6162608 44654652 ~ 44656098 (+)

Expression


Co-expression Network