AMCG00016974 (podxl2)


Basic Information

Item Value
gene id AMCG00016974
gene name podxl2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38468150 ~ 38471891 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016974
GACACGTTCCGTGTGGAGAGTGGGGACAGGCTGCTGGAGATGCTCGAGAGTGCTTTCTCCAGGAAGATGAACAGTCCTCAAGGCTCCTGGCTCATTTCACTGAGTAAACCTGACTGGCAGGACAAGCAGCTTCTCATGACTCTAGCCAGTGAACAAGGGTTCATTCCTACAAAAGATGTGCTGTCTATGCTGGGCGAAATCAGAAGAAGCTTATatgagATTGGCATCCAGAACTACACAAGTGTATCCGGCTGCCTGTCCAGGCCCAGTCAGACCCGCAGTGACTACGGGAAGCTGTTCGTAGTGCTGGTCATCATTGGGTCGGTCTGTGTGGTCATCATTGTGTCTGGCCTCATCTATATCTGTTGGCAGAAGCGCCTTCCAAAGATGAAAAACATGTCCAACGGTGAGGAGCTCCATTTTGTGGAGAATGGTTGCCACGACAACCCCACTCTCGACGTCACGAGTGACAGCCAATCAGAGATGCAGGAAAAGAAGGCCAGCATGAACGGGGTTGGCATGGAGGGCGGGGGAAACTGGCAAGTCTTGGTTAACAAGTCTGCCAAAGAGGAGGCAGAGAACATGGAGGAAGATACCCATCTTTAA

Function

symbol description
podxl2 Located in apical plasma membrane. Is expressed in endothelial cell and podocyte. Orthologous to human PODXL2 (podocalyxin like 2).

NR:

description
PREDICTED: podocalyxin-like protein 2 isoform X2

GO: NA

KEGG:

id description
K06818 PODXL2; podocalyxin-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016974 True 606 mRNA 0.51 4 38468150 38471891

Neighbor

gene id symbol gene type direction distance location
AMCG00016975 NA coding upstream 13486 38448608 ~ 38454664 (+)
AMCG00016972 mcm2,LOC106583719 coding upstream 52946 38400730 ~ 38415204 (+)
AMCG00016970 NA coding upstream 68863 38395699 ~ 38399287 (+)
AMCG00016965 NA coding upstream 116687 38337645 ~ 38351463 (+)
AMCG00016966 NA coding upstream 131504 38321965 ~ 38336646 (+)
AMCG00016973 NA coding downstream 7441 38479332 ~ 38492044 (+)
AMCG00016971 lsm3,LOC107562728,LOC107676354,LOC100705055 coding downstream 41329 38513220 ~ 38524777 (+)
AMCG00016976 slc6a6,LOC106566182,LOC105006920 coding downstream 314459 38786350 ~ 38800821 (+)
AMCG00016981 NA coding downstream 799382 39271273 ~ 39294718 (+)
AMCG00016980 NA coding downstream 833389 39305280 ~ 39323121 (+)
G17165 NA non-coding upstream 76078 38391677 ~ 38392072 (+)
G17089 NA non-coding upstream 332310 38135173 ~ 38135840 (+)
G17073 NA non-coding upstream 350895 38089801 ~ 38117255 (+)
G17064 NA non-coding upstream 375471 38062034 ~ 38092679 (+)
G17044 NA non-coding upstream 481493 37948232 ~ 37986657 (+)
G17214 NA non-coding downstream 64170 38536061 ~ 38536333 (+)
G17221 NA non-coding downstream 153635 38625526 ~ 38626023 (+)
G17230 NA non-coding downstream 282630 38754521 ~ 38805946 (+)
G17274 NA non-coding downstream 607524 39079415 ~ 39079897 (+)
G17361 NA non-coding downstream 1318198 39790089 ~ 39790567 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 3263918 35158597 ~ 35204232 (+)
G16550 NA other upstream 4367287 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 4368554 34093276 ~ 34099596 (+)
G16546 NA other upstream 4420430 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 4793789 33668593 ~ 33674361 (+)
G17193 NA other downstream 24160 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 767182 39239073 ~ 39254490 (+)
G17697 NA other downstream 3919406 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 5654323 44126214 ~ 44137931 (+)
G18192 NA other downstream 6182761 44654652 ~ 44656098 (+)

Expression


Co-expression Network