AMCG00016976 (slc6a6,LOC106566182,LOC105006920)


Basic Information

Item Value
gene id AMCG00016976
gene name slc6a6,LOC106566182,LOC105006920
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38786350 ~ 38800821 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016976
GTTGTGTACATCACCGCAACGTTCCCTTTCGTCATGCTGATTGTGTTGCTGATCCGTGGGGTCACTTTGCCAGGGGCCGCCGAGGGAATCAAGTTTTACCTGTATCCGGATCTTGGGCGCCTGGCAGACCCAGAGGTAGGAGCCCTTCTTGCTCTGATCTCTGTGCCTTTGCGGAGTGTCTGTTGGCAAGAGGTGCTCTGGTACTGCTGCACACATTTTGCAGAGTTTCTGAAATTCCCTTACCTTGGAGTATTAGCTGTGTTTACAGTACTTGAGTTTGTCGAAGTGGAAGGACAGATCACATCGTTGGTTGATCTGTATCCATCCTTCCTAAGGAAGGGTTACCGGCGGGAAATCTTTATAGCTATAGTGTGTTTCCTGAGCTATCTTCTGGGACTTACGATGGTAACTCAAGGTGGCATGTATGTGTTTCAACTCTTTGACTACTATGCAGCCAGTGGTGTGTGCCTTTTGTGGGTTGCATTCTTTGAATGTATTGCTGTAGCCTGGGTATATGGCGTTGATAATTTCTATGATGCGATTGAAGACATGATTGGCTACAGACCAAATCCCTGGATGAAATGGAGCTGGACTGTAATCACCCCTGTCCTCTGTTTGGGTTGCTTTATCTTTTCCTTGGCCAAATATACACCATTGAAGTACAATAAGAGCTACGAGTACCCTGATTGGTCGATTGGTGTCGGTTGGTGTTTGGCTCTCGCTTCCATGATTTGCATCCCCATGGTAGTTGTCATCAAGATCATTCAGTCTGATGGGCCTCTGATTGAGCGGATTAAGGCAGTTGCAGCGCCGGCAAGGGGGGGAGCAAGCTCTCGTCCTGCAGACCATCGCCCCAAAGGCAGCGAGCTGGCCTATCCTTTAGATCCCAACGGGAACAACGGCCTGATAAAGCCCACCCACACCATTGTAGAAACGATGATGTGA

Function

symbol description
slc6a6 Enables alanine transmembrane transporter activity and taurine transmembrane transporter activity. Involved in alanine transport; amino acid import across plasma membrane; and taurine transport. Located in plasma membrane. Part of apical plasma membrane; basolateral plasma membrane; and microvillus membrane. Biomarker of multiple system atrophy.

NR:

description
sodium- and chloride-dependent taurine transporter

GO:

id name namespace
GO:0015849 organic acid transport biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function
GO:0005369 taurine molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016976 True 945 mRNA 0.49 6 38786350 38800821

Neighbor

gene id symbol gene type direction distance location
AMCG00016971 lsm3,LOC107562728,LOC107676354,LOC100705055 coding upstream 261573 38513220 ~ 38524777 (+)
AMCG00016973 NA coding upstream 294306 38479332 ~ 38492044 (+)
AMCG00016974 podxl2 coding upstream 314459 38468150 ~ 38471891 (+)
AMCG00016975 NA coding upstream 331686 38448608 ~ 38454664 (+)
AMCG00016972 mcm2,LOC106583719 coding upstream 371146 38400730 ~ 38415204 (+)
AMCG00016981 NA coding downstream 470452 39271273 ~ 39294718 (+)
AMCG00016980 NA coding downstream 504459 39305280 ~ 39323121 (+)
AMCG00016983 NA coding downstream 574439 39375260 ~ 39396596 (+)
AMCG00016982 NA coding downstream 598936 39399757 ~ 39429289 (+)
AMCG00016984 dock3 coding downstream 868379 39669200 ~ 39788816 (+)
G17221 NA non-coding upstream 160327 38625526 ~ 38626023 (+)
G17214 NA non-coding upstream 250017 38536061 ~ 38536333 (+)
G17165 NA non-coding upstream 394278 38391677 ~ 38392072 (+)
G17089 NA non-coding upstream 650510 38135173 ~ 38135840 (+)
G17073 NA non-coding upstream 669095 38089801 ~ 38117255 (+)
G17274 NA non-coding downstream 278594 39079415 ~ 39079897 (+)
G17361 NA non-coding downstream 989268 39790089 ~ 39790567 (+)
G17381 NA non-coding downstream 1467604 40268425 ~ 40284772 (+)
G17419 NA non-coding downstream 2415674 41216495 ~ 41216809 (+)
G17424 NA non-coding downstream 2444481 41245302 ~ 41245519 (+)
G17193 NA other upstream 282718 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 3582118 35158597 ~ 35204232 (+)
G16550 NA other upstream 4685487 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 4686754 34093276 ~ 34099596 (+)
G16546 NA other upstream 4738630 34047371 ~ 34047720 (+)
AMCG00016979 NA other downstream 438252 39239073 ~ 39254490 (+)
G17697 NA other downstream 3590476 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 5325393 44126214 ~ 44137931 (+)
G18192 NA other downstream 5853831 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 6148213 44949034 ~ 44961601 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021283 slc6a6b coding NC_007133.7 CM002906.2 31493953 ~ 31517300 (-)
grasscarp (Ctenopharyngodon idella) CI01000015_05652612_05671172 SLC6A6B, SLC6A6, SLC6A6A coding CI01000015 null 5652612 ~ 5671240 (+)