AMCG00016980


Basic Information

Item Value
gene id AMCG00016980
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 39305280 ~ 39323121 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016980
AACACAGGTTGCATTTGCCTCGGGTATCTATGCCACAGCGCACCGTCCCGCTCTCTGCTGACCGGGAAGTGTCCGCACACGGGGAGGAGCAGGACGCACAGCAGGGCCTAAGAGGGCGGGATCCTGGCGTGCTGCTTCAATAACTGCTTTCTTTTTCGGCTTACACATGGACAGCAAAGACGAAGAGTTTGGTGAGTTTGATCCAGATATTCTGGATGAAGGCCCCACAGCGCCCCCACCCGGCTTGTTTGATGATGTGTCCGGTTACGAGGAGACTCCCAAAAATGGAGACGACATAGACAAGTTGTACCCGCCTCCTCCTGACCGTGTTCCCATACCAGAACATGACCGGAATGCTGCTGTTCCTCATGTGAGGGTGCCCACAGTGTCTGAAGAAATCGCGAGAGAAGCTCTTCTCCAGTTTGTGGACAAGAAATGGACCTACAGGAGCAAACCGGCCAGGGATCTGGTTTTTAAGGATCTAAAACCCTTCACAGTGTACCGGtATCGCTTGGAAACATTTGCAGAATCCAGAGCCAGTGCTTGGGAGTTCGAGCCTTATACTGATCAGTTTTTGGACGGTCCCCAGTATGGCATTAGTCCCCCTCCCTGGGACGTTGTGGTGGAAGTCCCCCCCACATACACAGACTCCAAGGTGAAAGTCAAGGTGCCCCACTCCTCGTTCGTCAGGACGCGGTGTACCTTCTGCCATGGCTCTGGTCGACACCAAAACAATAGATGCACGAGCTGTCACGGATCAGGCCGGAAAAGATGCACCTTCTGCTCTGGAAGAGGACATAAAACATGCCCTTCttgtaatgggaaaaaaaacctGATGCATTTCATTCAGCTGACTGTCACATGGAAAAACCACGTGTTTGAGTACGTCCCAGATCGGATACCTGACTTTCCTGTCAAGAAATTTGAGAAGGTGGCTGGAGATCCATTCTTTGTTGATGAAAGCATCTTGGTTTACCCCATAGTGGGCTTTCCAGATGAGGAGATCTGTGAGGCCTCAAAGAGGGGAAACCAGGAGCACTTATCCACTTTCTCCTCAGTTAACCGCATCCTTCAGCAGCGTCAAACCATTGAGCTCATTCCTCTGACTCACGCCTTCTACGACTACAAAGGACAggattataactattttgtatatGGGATGGATAACAAAGTTTATGCCCCTAAATACCCCTCCAGCTGCTCTATTTTGTGAAGCGTGTTTGACatcaattattgtttttgaattaaaaaaatacatgcttttaaaaaaaaacattaaccaaGTAAAATGTACTCTTATAACATGAAGCGCAGGTTCGTATACAGAATTTgatgtaataaattaatgattcTTACCTGtacactatttttaaaattctcttgcaacattttaaaattgtttttaatttcggGGTGAGAATTAACTaaatctggattttttttaattattatttttttggagcTGGATTCTAGTATAAATTCTACTAAGACTACTCCCTTCAGTAATTCTTGGATTAAGTGGTCGATTGAACACTTTATTGCTGTGAACTAATATTGCCTTACTTCATCTCACTGTGTTATAGGTAAAGTTATTTAAGGGAAGCAGGTGGTATTTCTGATAATTTACCATAGTAAAtcaaagtgttaccaaaatgaAGGTTTTTGcttatttagtttaaaacatGGTAAAACAAGATCATTTTGAAAGCAGGGCAAATgattaaacagttttaaaatgtttataaaggaaCTCTGTTCCTAAAAATACCTAAGTGTTTGGACCAGGAAATGACAACCGTTAAAGGCAAGAGTGATTCAGTTAACCATGGTTTGACACAATCTTGGCAGATCAACATATCTTAATTCAACTGCTTTCTCTTGTTATTGTCTACAAAGATGTCTCTTTTATTGACTTTGTTATAAACCTGCAGTGCCTTCCAGTTCTGTTACGATCTTTCTCCCCTGAATGccttttctttgaaatgtttcaaacTCTGTGAAAAATCTGCTTAGTTACATTATCTTGGCATTCCTTACACAAGTGTGTTATTTCACAACTCTGAGTGGAGAGATTAATTTTGTGgactcttctttttttttatcatggtGGCTATTAACAAATAAGGGCTTTCTATATTTTGGGTTTCTTTTGCAAACTTTTTATCCTAATCTATGAATATGTCCTGTCTGTCTCCCTATTTTGTAAGATTTTGAGTTCTGTTCTGTACTTTCAAAATATGGGTTAATTGTGGTTCTTATTTTTTACatcatttgtaataataataataataataaataatatgtatatccCTGTGTTTTCTTAAgcataataatgttaaatctgTGACCATAAACATTTCtccaaataatgtattcaatggAGTGGCTGAAACCATGTGTTGTGTAATTTGAGTCTTTGCCCAGCAGATGTTTTTGACTTGCATTATATGTTTCATCCGGACCAAAgcattactttattattttttttataatatgtatgtacattGTTTTGAGTAGTTATTGGAACGCTGTGGTCTCTTATAGCAGGTCCATAACTAATTTCTGTTGACATTCCTCTTTCATAGCAGAGCACATTAcaacacaaatgaataaaaacaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016980 True 2622 mRNA 0.40 11 39305280 39323121

Neighbor

gene id symbol gene type direction distance location
AMCG00016981 NA coding upstream 10562 39271273 ~ 39294718 (+)
AMCG00016976 slc6a6,LOC106566182,LOC105006920 coding upstream 504459 38786350 ~ 38800821 (+)
AMCG00016971 lsm3,LOC107562728,LOC107676354,LOC100705055 coding upstream 780503 38513220 ~ 38524777 (+)
AMCG00016973 NA coding upstream 813236 38479332 ~ 38492044 (+)
AMCG00016974 podxl2 coding upstream 833389 38468150 ~ 38471891 (+)
AMCG00016983 NA coding downstream 52139 39375260 ~ 39396596 (+)
AMCG00016982 NA coding downstream 76636 39399757 ~ 39429289 (+)
AMCG00016984 dock3 coding downstream 346079 39669200 ~ 39788816 (+)
AMCG00016985 manf,LOC106583751,LOC102787989 coding downstream 467812 39790933 ~ 39797563 (+)
AMCG00016986 NA coding downstream 475014 39798135 ~ 39800651 (+)
G17274 NA non-coding upstream 225383 39079415 ~ 39079897 (+)
G17230 NA non-coding upstream 499334 38754521 ~ 38805946 (+)
G17221 NA non-coding upstream 679257 38625526 ~ 38626023 (+)
G17214 NA non-coding upstream 768947 38536061 ~ 38536333 (+)
G17165 NA non-coding upstream 913208 38391677 ~ 38392072 (+)
G17361 NA non-coding downstream 466968 39790089 ~ 39790567 (+)
G17381 NA non-coding downstream 945304 40268425 ~ 40284772 (+)
G17419 NA non-coding downstream 1893374 41216495 ~ 41216809 (+)
G17424 NA non-coding downstream 1922181 41245302 ~ 41245519 (+)
G17482 NA non-coding downstream 2278827 41601948 ~ 41605391 (+)
AMCG00016979 NA other upstream 50790 39239073 ~ 39254490 (+)
G17193 NA other upstream 801648 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 4101048 35158597 ~ 35204232 (+)
G16550 NA other upstream 5204417 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 5205684 34093276 ~ 34099596 (+)
G17697 NA other downstream 3068176 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 4803093 44126214 ~ 44137931 (+)
G18192 NA other downstream 5331531 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 5625913 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 10048901 49372022 ~ 49382218 (+)

Expression


Co-expression Network