AMCG00016981


Basic Information

Item Value
gene id AMCG00016981
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 39271273 ~ 39294718 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016981
ATGTCTTGGGTGGAAGTGATTCATTTCCGTTTCCTCTGGTTTCATAGGATCCCATCCATTACTGAAGAGGTGGCCCGCAAAGCATTTACTGATTATGTGAACAGTAAGTGCTGTTATAGCTCCAGTCCAGTGGAAGAGGCAACGTTCACCAGCCTTGAAGCACACAACACATACAGGTATCGCCTGGAAACCTTCACTGAGTCCAGATCTACGGAATGGTCCAACGAACCTTTTGAAGGTCAGCCTGTAGATGCCTTCACCCAGGCGGCACCTGGTCCATGGAATGTTCCAGTTCAGACCCCAGAATTGTTTAAAGATGCCACTCAAGACATCAAGGTCCCCTGCACCTCTTCTGTCAAGGTGTATCCTGTGCAAGGTTTTCCTGACCCAGATATTTGCCAGGCGGCTCAGAGACTGGTGAATGAGCACCAAACGAAGTATGCAGCAACATCTCGTGTTCTGCAGCAGACACTTTCTacactgcatttgtttattgCCCTGCCTATTGTCTTCTGCAGAATCCCTTCCATTAGTGAAGATCTTGCCAAGGAAGCTCTTCTGGAGTATGCTTCCAGCAAGTGCTGCTACAGCACCAAACCTGCCAAGGAGCTGGTGTTTAGTGAGCTTCAGGTACACAACACCTATAGATATCGTCTGGAGACCTTTACCGAGTCCAGATCAAAAGAGTGGGACAGCGAGCCTTATAATGGACAATTTGTGGATGCCTATGGAGGTGTGGTTCCAGGCCCCTGGGAGTTGGCTGTCCCAGTTCCTGCActgtttaagaaaaacaagacatctGTCCGAGTCCCTCACACATCTTCCGTTAAGGGCTGTCACAGCTGCTTGGCTTTGGGCAGATCTGCTTGCCAGAAGTGTATCACATCTGGAAGGATGCAGTGCTGGGTGTGCAATGGGTCTGGAATGCATTTATCTGATCGACGGTGCCATCATTGCAACGGCATAGGTCGCGTCAAGTGCACTTCTTGTGGAGGAGTTGGGTCACAGACATGCTCTACCTGCAGGGGAAAAGGACAACTTCTCTGCTACCTTAAACTTGTTGTGAAATGGACAAACAACGTAAATGAATGCGTGGTGGACAAGAAGTCAGGCTTCCCTGTCGATAGGGTCTCTCAGGTCACTGGAGAGACTGTCTTCTCTGATACAAATCCATTGGTTTATCCCATCACGGGTTTCCCTGACAATGCTATCAATCATGCCTCATACAATGCAGTGACAGAGCACCAAGCCCGGTTCCTCTCAACTTGTCGTATCTTGCAACAGGTAAGCACCGACAACTGGGCCTTTAGCATAGAGGTCTCACTAAGAAATGTACAGGGTGAGCTGGTCTGACACATGACCACTATGCACCACATCTTAAACTTTACAACTGACTGTACCC

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016981 True 1402 mRNA 0.49 12 39271273 39294718

Neighbor

gene id symbol gene type direction distance location
AMCG00016976 slc6a6,LOC106566182,LOC105006920 coding upstream 470452 38786350 ~ 38800821 (+)
AMCG00016971 lsm3,LOC107562728,LOC107676354,LOC100705055 coding upstream 746496 38513220 ~ 38524777 (+)
AMCG00016973 NA coding upstream 779229 38479332 ~ 38492044 (+)
AMCG00016974 podxl2 coding upstream 799382 38468150 ~ 38471891 (+)
AMCG00016975 NA coding upstream 816609 38448608 ~ 38454664 (+)
AMCG00016980 NA coding downstream 10562 39305280 ~ 39323121 (+)
AMCG00016983 NA coding downstream 80542 39375260 ~ 39396596 (+)
AMCG00016982 NA coding downstream 105039 39399757 ~ 39429289 (+)
AMCG00016984 dock3 coding downstream 374482 39669200 ~ 39788816 (+)
AMCG00016985 manf,LOC106583751,LOC102787989 coding downstream 496215 39790933 ~ 39797563 (+)
G17274 NA non-coding upstream 191376 39079415 ~ 39079897 (+)
G17230 NA non-coding upstream 465327 38754521 ~ 38805946 (+)
G17221 NA non-coding upstream 645250 38625526 ~ 38626023 (+)
G17214 NA non-coding upstream 734940 38536061 ~ 38536333 (+)
G17165 NA non-coding upstream 879201 38391677 ~ 38392072 (+)
G17361 NA non-coding downstream 495371 39790089 ~ 39790567 (+)
G17381 NA non-coding downstream 973707 40268425 ~ 40284772 (+)
G17419 NA non-coding downstream 1921777 41216495 ~ 41216809 (+)
G17424 NA non-coding downstream 1950584 41245302 ~ 41245519 (+)
G17482 NA non-coding downstream 2307230 41601948 ~ 41605391 (+)
AMCG00016979 NA other upstream 16783 39239073 ~ 39254490 (+)
G17193 NA other upstream 767641 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 4067041 35158597 ~ 35204232 (+)
G16550 NA other upstream 5170410 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 5171677 34093276 ~ 34099596 (+)
G17697 NA other downstream 3096579 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 4831496 44126214 ~ 44137931 (+)
G18192 NA other downstream 5359934 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 5654316 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 10077304 49372022 ~ 49382218 (+)

Expression


Co-expression Network