AMCG00016983


Basic Information

Item Value
gene id AMCG00016983
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 39375260 ~ 39396596 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016983
CTCAGATCTCCAGATGGCCAACAGCTCAGCAGTGTTCTGGAGCTCCACAGAGAGCTCCAGCTATCAGGCCCTGCTGCTTGATGAGGACCATGGGTGGCTTCTGGTTGGAGCTAAAGACCACATCTTCTTGCTACGCTCTGACAACCTGACTGACCGACCTCGCAAGATATATTGGCCAGCTGCAAAAGAACAAGTTGAACACTGCAGACTGGCAGGAAAGAGCATGGAGGCAGAATGTGCTAACCATGTGAGGCTCTTGCAGCCTTTTAACAAAACCCACGTGTACATCTGTGGGACAGGTGCTTTTCATCCTCTGTGCACCTATATTGAGCTTGGACACAATGTAGAGGAGCCGGCGTTTCATCTGCTTCATCACGCTGTGGAGTCTGGAAGAGGGAAATGTCCCTACAGCCCTATGGAGCAGTTCACTGCCAGACTCACAGATGGGGAGCTCTATGCTGGAACATCAGTTGACTTTATGGGCACCAATGCTGCCATTTTCAGAACGGCTGTCCATGGAAGCAGTCAGCACTACATCCGCACAGAAGCCAATCAAGACCACTGGCTCAATGagCCGGAGTTCATTGGTTCCTTCTCCATCCCTGACACGCACAGCCTGGATGACGATAAAGTCTATTTCTTCTTCAAAGAGACGGCGGTGGAATCGAACCAGTGGGACAAACGCATCTACACCAGGGTGGCCAGAGTCTGCAAGAATGACGCTGGGGGGAAGAGGAGCCTGATTAACCGCTGGACCACATTTCTGAAAGTGCGGCTCGTGTGTTCAGTGCCGGGGCTCGAGGGCATGGACACTCACTTTGATGAACTGGagGACATATTTCTGCTGGAGACCAAGGATACTCAGAATCCAATCCTCTATGGTGTCTTCTCTGCATCTGGCTCTGTGTTCAGGGGCTCCGCTGTGTGCGTCTATTCTATGGCCTCCATCCGCGCTGCTTTCAACGGACCTTTCTCCCACAAGGAAGGGCCAGACTACCGCTGGGTGGAATACAAAGGAAGGATCCCATACCCCAGACCTGGCACTTGTCCCAGCGAGACCTACGACCCTTTGCACAAGTCGACCCGTGACTTTCCAGATGATGTCATCAGCTTCATGCGCAGTCACCAGCTGATGTGGGAGCCCGTGCTGCCCCTCAACAGGCGGCCTGTGTTCATGAGGACCGGCACCCCTTACCTGCTCAAGAAGGTGGTGGTGGACAGAGTGGATGCAGAGGACGGACAGTACGATGTCCTCTATCTGGGAACCGATGAGGGGAAGGTTCTGAAAGTAATCACCATCCCAAAAGACAACTGGGAAACAGAGGAGATTGTTCTGGAGGAGCTGACTATTTTTCAGGAGCCGACCCCTATCCTCAACATGGAGATCTCCACAAAACGGCAACTGCTGTATGTGAGCAGTGAGTCGGGCCTGGCGCAGGTGTCGCTGCATCGCTGTGAGTTCTATGGGAGGGTCTGTGCTGAGTGCTGCCTGGCCAGAGACCCCTATTGTGCCTGGGATGGCACCTCCTGCAGCCGATACTTCACCACCAACAAGAGGCGTGCTCGGAGACAGGACGTCAAACACGGAGACCCCAAGAGCCAGTGCCACGATCTGGGAGACGGTTTGGAGGTGGTGGAGGAGAAGATGATCTATGGGGTGGAGACCAACACAACTTTCCTGGAATGTGTCCCCAAATCCCAGCAAACCAGTGTCCGATGGATGGTACAGCACCACCCAGCTCAGCACGGCAAGGAGCTGAAAGGCGAGGCACGCTTTGTGCATCTGGAGCGCGGCATCCTCATCCACCAGCTGGAGAGGGGCGACGCAGGCCTTTACTCCTGCCTGGCTGAAGAGCTGTCCTTCTCCCACCCCATCGCCCGCTACAGCCTCCATGTCATCGAGCAGCAGCACATTGCAACTTTGCCGGCCCGGGCCGGGGAGAAGGGGCCGGGGGTGGGTGGGAAACACAGCCCCTCGGCCTTCGGGCAGATCCAGCGCCACTACAAGGACTACCTGCAGCTAATGAGCGTCACAGGCCTGAGCGCCGACGAGTATTGTGAGCAGCTGTGGTTCAGGGAGAAGCGGCGACAGAAAATGCGTAACATGAAGTGGAAGCAGGTGGTGGACCCGAGAAAGGCGAGAGTGCGCCGACACCCCAGCGCTTTCTGAGGGAGGGGGACACGTGCAGACAGGGTACCGGGCAACTTGAAACTGACATTATAACTGCTGTTGCAGGCCagctttcattctttcattctaAACAAGCAAATTTAGCATTgccaatattttgtttgtatttttttatcccCCCCATTTTGGAATCAAATCCTAATCTATCAGTGTGCTAGAGCTGGACAGATGAAGATGACATACAAGCACCCTGTGTGACAGCAATGCGAACAGCAGAGAACTCTCTGTAGGTTTATAACTGCACCCCAGGCCTGCATGTCAAGCCCAGGAAAGACTGATCCAAATGCAAACTCCCCCATCCCTTATTCCACAACTGTATATTGACCAGCCTTTGGGAGTCTTAGTCATGTAACGACAGAACTCAGATCCAAAGCTAGTGCTCtctggactatagggcccaacCTGAGCCTGAGGCCCTCAAAATTGGCTTCCCAGCTTTGCGGAACTCTTCATAGCCAAGACAGCCTGGAAGCCAGTTGCAGCCTGTACGGTCCGTCTGGATTTCCCCTTCTACATTTCAACATCCTTCCCTTCATCTCTTAGAACATTGTCTTCAGGTGTCTTGCCTGTGAGGCGCGTCATCTGAATTTGCTGTGTGCAGGGTCAAAGAGACGAGCCAAGAGCGCCTCATGCTGCTCTAATCTGCGGCCCAACTGTTAATGCATTCGAGGGACCACAGCGCTAACGGCATTCCTCTGACTGCAACTCAAAGGTTTCGacatctggaaaaaatttaattCAAGTGCCCTATTGAGTCAATGCTCTGAATACCTTTGtatgctgcccccccccctactgtgtattttaaatataacattccTCTGTACTTTTTAATAGTCAAGGTATAGAGATTGTATGTAATGAATTTCTCTGGCGCTTTGGGAATCGCAGAGAGGTGTTCATGTCCCACATTTGTAGATTCTAAAGCAAGTACTGTACTCTCTCTTCCGCAGGATGGAAATGCAAGTTACTTGCgtctgttttaactttgcctttcCAGGAAACAGTGTTAGAGACGACTGTGAAGTTTCACCAACCTTAGCCTTTTCTAACCATTGCTGAGATCTCCCAGGTTTTCCATTCCTGTTATTTAGACCCCCATACATTAACATAGTGgaactaattaattaatgggaGCAAACATTGTACGAACAGATGAAAATGTGCTCTGTCACAAAGGCTAAAACTGGCTGAATCATAAGCTAAATGTTATAATATCTAAATACCTGGTTACCAATGCAGTGCAGGTTAAAATATGCACTGTATTGCCAGAAGTAATGGGACAACGAACCTGaatcaaaaacagatttttacaatggatcccactctttacggcagtatttttcgtcattaggacgctttgcgttcttcccggttcttccaaaTGTGTCGGATGtggcaagaaatgagcatcagaaacacagacagacatgaggagagagaagtgaCACAATAACCagcacaaccaagagatactttaatgcgcaagcgctctcgtcgccgggctaaactcgatgtGCAAGCACCCTCCACCCACACTAATTTAGacggatataatttgtataaaattaaagaataataaagtttgtttgcattttaataaattggaaagcaatgcaaacagatgcacgAAGTTGCATTAGATGTTGAAGTGGTataacagtttttt

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016983 True 3860 mRNA 0.50 16 39375260 39396596

Neighbor

gene id symbol gene type direction distance location
AMCG00016980 NA coding upstream 52139 39305280 ~ 39323121 (+)
AMCG00016981 NA coding upstream 80542 39271273 ~ 39294718 (+)
AMCG00016976 slc6a6,LOC106566182,LOC105006920 coding upstream 574439 38786350 ~ 38800821 (+)
AMCG00016971 lsm3,LOC107562728,LOC107676354,LOC100705055 coding upstream 850483 38513220 ~ 38524777 (+)
AMCG00016973 NA coding upstream 883216 38479332 ~ 38492044 (+)
AMCG00016982 NA coding downstream 3161 39399757 ~ 39429289 (+)
AMCG00016984 dock3 coding downstream 272604 39669200 ~ 39788816 (+)
AMCG00016985 manf,LOC106583751,LOC102787989 coding downstream 394337 39790933 ~ 39797563 (+)
AMCG00016986 NA coding downstream 401539 39798135 ~ 39800651 (+)
AMCG00016988 NA coding downstream 869345 40265941 ~ 40280387 (+)
G17274 NA non-coding upstream 295363 39079415 ~ 39079897 (+)
G17230 NA non-coding upstream 569314 38754521 ~ 38805946 (+)
G17221 NA non-coding upstream 749237 38625526 ~ 38626023 (+)
G17214 NA non-coding upstream 838927 38536061 ~ 38536333 (+)
G17165 NA non-coding upstream 983188 38391677 ~ 38392072 (+)
G17361 NA non-coding downstream 393493 39790089 ~ 39790567 (+)
G17381 NA non-coding downstream 871829 40268425 ~ 40284772 (+)
G17419 NA non-coding downstream 1819899 41216495 ~ 41216809 (+)
G17424 NA non-coding downstream 1848706 41245302 ~ 41245519 (+)
G17482 NA non-coding downstream 2205352 41601948 ~ 41605391 (+)
AMCG00016979 NA other upstream 120770 39239073 ~ 39254490 (+)
G17193 NA other upstream 871628 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 4171028 35158597 ~ 35204232 (+)
G16550 NA other upstream 5274397 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 5275664 34093276 ~ 34099596 (+)
G17697 NA other downstream 2994701 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 4729618 44126214 ~ 44137931 (+)
G18192 NA other downstream 5258056 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 5552438 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 9975426 49372022 ~ 49382218 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_10127318_10157548 SEMA3E coding CI01000013 null 10127196 ~ 10157548 (-)