AMCG00016987 (pcbp4,LOC108436686,LOC107677040,LOC107708490,LOC107567193)


Basic Information

Item Value
gene id AMCG00016987
gene name pcbp4,LOC108436686,LOC107677040,LOC107708490,LOC107567193
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 39827240 ~ 39855114 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016987
taaagtaacatCCAACAATTATGTCCGCATTAAAATTACCGTTATACTtccaacaaaatcaaaaaaagacttatttgcaatttttattaattgaatctCTTTGTCTTGTTTCACAGGCCTGTGAACACTGAACACCAACACTTGCGTCAGGAGTTTGACTTTTGTATGAGCCACTTTCATGCGTCTCCCTGCGTCAGACTCCCAATCCAGAATGAACTGTGAGCAGGACCTTGTAGATGGGGGGATGAACGTCACCCTTACTCTCCGGCTACTCATGCATGGAAAGgaagTTGGCAGTATTATAGGAAAGAAAGGAGAAACCGTGAAAAGAATAAGAGAAGAGAGCAGCGCACGTATCAACATTTCTGAAGGGTCGTGTCCGGAAAGGATCATCACGATCACCGGCTCAACTGAGTGTGTGTTCAGAGCCTTCACCATGATCACGATAAAACTCGAAGAGgaCCTCAGTACACTGGTTGCCAACGGAACAGTCACCAGCAAGCCCCCTGTCACTCTGCGTCTCGTCATCCCTGCCAGCCAGTGCGGCTCGCTCATAGGCAAGGGAGGCTCCAAGATCAAGGAGATCAGAGAGAGCACAGGAGCGCAAGTCCAGGTAGCCGGAGACTTACTGCCCAATTCCACAGAGCGAGGCGTGACGATATCTGGGGCCCAGGAGGCCATCATACAGTGTGTCAAGCTAATCTGCACGGTCATCTTGGAGTCTCCTCCAAAGGGCGCCACTATTCCATACCGCCCCAGTCCTGCCCCAGGAGCAGTTCTCCTCTCTGGAAATCAGgTTTTCGAAGCTTCTGATTTTGGGTCACACCCACTTTTCTCAATGGCTCAGGGCGGTCTGGAGCTGCAACAAGCCTACTCCGTTCAGAACCAGTATGCCATTCCACATTCAGAGtTGGCCAAGCTCCACCAGCTGTCGATGCAGCAGGGCGCTATGGGTCCCATGGGCCAGACAGCCGCCCAAGTCCTGCCTGGAATGGAATCCAGTTCTCAGACAACATCCCAGGAGCTCCTCATTCCAAATGATCTGATCGGCTCGATCATCGGACGGCAAGGCACCAAGATTAACGAGATCAGGCAGGTGTCAGGGGCGCAGATTAAGATCGGCAGCCAGCTGGACGGGACGAGCGATCGGCACGTCACCATCACCGGCTCGCCCATCAGCATCAATCTGGCACAGTACCTCATCACCTCATGTTTAGAGACCGCAAAATCCACCGCCCAGTCCTCTTCCATCACGAGTCCCGTTGACCTCAACATGACCTTCACCCAGCCTGCCTCCCCTGCCTCGTCCTCGGCCGCAGCCCTGGCAGCGATGGGTGCCATGCCCCACGCTCCCATGCTGGGTGCCCCCTAcgccctccccctctccagcATCCTGGGAATGAAATCCGTCCCCTTCCTGGCACTCTCCGGCCCTGCTGCTGCCTCCCCCGGTGCCGCCCATGGAACCCTAGCCTCTTACACGGCCAAAATCTCCTCTGCCAATGGGATCAAGAAGCCCGAGAGACAGAAGTTCGCCCCCTATTGACCTCCCCTACCCTGGAAGCAGAAGGCCACCATTCTCTTTATTTTCCTCTGCCTGGATTTAGCTGgatagaaaaaaattaaaattaacaaaaaaattaaaataaaaaacgccCAGAGACTGGATAGCTTTTGTTTTGTAGCCTAGAAGATTAAGAGGTGTCCCTCTTTCAGCAGAGAAGATACCAAGAGGAAATAGGCAAATATTTGCCCACTCGGCGGCCTCAAAGCCATAGACTTATCCTCCTCCCCATCCACCAAACCCCACCCACCCCTCCCATCccctgcttatttatttaaaaaaaagaaaaaaagaagaaacaaaaaaattaagattattCCCTCAAAGAGTTTGTAAATGATACACTGGTCACTGCAGCTAACTGTATGTATCTGCTTTTATACAATGATGTCCTTGTATGCTCCTGTATATGACTCTCTgaaggtttcttttttaaaaatatatatatgaactgtgtaaatcaaaagtttttaaaaagacTACAGCTTGAAACCTCTCTTTGCAGTATGGGTTTCACCGCATTTATTTGAAACGTGccgttttgttcattttatttatttttactatggTTACGATGATGATTATATCGATTGCAGAAATGTCGGCAGGTGTATATACAATGGTTTCTGGCAACCTGCGATGAGGATATAAACCAAGCAGTAGTCTGCTGTGTTGAAAATGATGATGGTCAACATAGGGGATTATTTGTCGTAGCTGCAGTAGTTGCTGACAAGAggtgaggtaaaaaaaaaaaaaacagggaaaaaacaaaccattttaaatgtttttataggAAGAGTGTACTGCCACTTCTGAAATGTATccatgcattaaaatattaacattaaataaattgtaaccCCCATGTCTCAAAATGAAATTGGCAGTGTGGAAGGATACTTTTCACCAGGAAAAGATCCATATACAATAACACTGcagcaatgcaaaacaatgtcCCTCTTGTGTTGGAAAGTAGTATTGCTTTGTGACATTGCCCACACACAGAAAGTGTCTGACACACTGGTTTATGCGCCATCCTGACAGAGACTCTCGAATGACCCTGTACGTGACTGAAGAGGCTCATAATATGTTGAGAGTTAATTCCTGTACAATGACATAACATTAAAGTGTGAAAGAGGGCTGAGTGACACCCTGGTAGGTAAATGATGCTGGCCAATGGGATCTAGAATAGGATGTGTTGGTAttagttttccttttgaaatgaaCTCTCAATTTACTTAGAAGTGTAAGAGTGTCTTTCAGATGAAGTGATGCAATTTCATTTATTCTTCAAAAAAAACTGGTAAAGGTGTGGACACCtctagacatttttgttttgtcttcaacTCACACTCcatttgcatgaaaaaaaaCGACTGGCCTTTTTGTCTATGCAAAACATCAGCTCCTGGTTCACACAGTAAATCTAGGACGTGTTCACCTATATCATTGACAGCACTGCAGAACTGCTAACGGGAAAGGGCTACTCAAATCAGTATTACAGGAAGAGGTACTGGCACAGTTTTTCTTGTGCTTAACTTGCTTTGTGAACCAATGgagatttgaaaatgtcaatGCTTTCAGTCCAGCatcttttacacacacacaaacacaaacctaaacaagcaaaaccaataaaataaaagactacTACAACTAAATGTTTGCACTTGAACATGGTATTTTCCAACGAAGGCCAAAAATGTTTTCCTAATAGCATTGTTTTCGTACAAAGGCTTATCATTTGTGTCTACCTGAaatactttgtaatgttttgtgattattttttatttatttttattctgtttgatcaatgccagaaaaataaaacaatactgtatTAACCTGA

Function

symbol description
pcbp4 Predicted to enable mRNA binding activity. Predicted to be involved in negative regulation of mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nucleus. Is expressed in nervous system; otic vesicle; pleuroperitoneal region; somite; and tail bud. Orthologous to human PCBP4 (poly(rC) binding protein 4).

NR:

description
PREDICTED: poly(rC)-binding protein 4-like isoform X2

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K21444 PCBP3_4; poly(rC)-binding protein 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016987 True 3413 mRNA 0.44 13 39827240 39855114

Neighbor

gene id symbol gene type direction distance location
AMCG00016978 sec13,LOC107557974 coding downstream 589341 39218824 ~ 39237899 (-)
AMCG00016977 LOC108436697 coding downstream 933721 38822108 ~ 38893519 (-)
AMCG00016969 NA coding downstream 1313473 38506156 ~ 38513767 (-)
AMCG00016968 NA coding downstream 1455990 38360534 ~ 38371250 (-)
AMCG00016967 NA coding downstream 1607403 38182302 ~ 38219837 (-)
AMCG00016992 LOC105913228,LOC107691887,LOC107701594,LOC108431596,LOC100331190,LOC107592839 coding upstream 1033245 40888359 ~ 40888580 (-)
AMCG00016990 LOC103368898 coding upstream 1134152 40989266 ~ 40990660 (-)
AMCG00016991 LOC103386478,LOC108431596,LOC103131950,LOC102219775,LOC106954144,LOC106583731 coding upstream 1182238 41037352 ~ 41038674 (-)
AMCG00016993 LOC106583731,LOC105007334,LOC107661916 coding upstream 1251577 41106691 ~ 41108161 (-)
AMCG00016999 NA coding upstream 1673542 41528656 ~ 41530149 (-)
G17364 NA non-coding downstream 26400 39794975 ~ 39800840 (-)
G17325 NA non-coding downstream 430385 39394493 ~ 39396855 (-)
G17294 NA non-coding downstream 523617 39301446 ~ 39303623 (-)
G17277 NA non-coding downstream 712851 39114141 ~ 39114389 (-)
G17275 NA non-coding downstream 747348 39079415 ~ 39079892 (-)
G17383 NA non-coding upstream 409483 40264597 ~ 40266261 (-)
G17384 NA non-coding upstream 425424 40280538 ~ 40284823 (-)
G17414 NA non-coding upstream 1018258 40873372 ~ 40878065 (-)
G17423 NA non-coding upstream 1389812 41244926 ~ 41245225 (-)
G17505 NA non-coding upstream 1746810 41601924 ~ 41605395 (-)
AMCG00016959 NA other downstream 1768301 37875250 ~ 38058939 (-)
G17032 NA other downstream 2068769 37758157 ~ 37758471 (-)
AMCG00016938 NA other downstream 4428210 35395992 ~ 35399030 (-)
G16563 NA other downstream 5719299 34106690 ~ 34107941 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 6313661 33488725 ~ 33513579 (-)
G17421 NA other upstream 1361537 41216651 ~ 41217231 (-)
AMCG00017014 NA other upstream 2081812 41936926 ~ 41938563 (-)
G17842 NA other upstream 2953597 42808711 ~ 42864616 (-)
AMCG00017051 NA other upstream 3093877 42948991 ~ 42974433 (-)
AMCG00017061 NA other upstream 3425123 43280237 ~ 43286603 (-)

Expression


Co-expression Network