AMCG00016997 (rnf123,LOC102204603)


Basic Information

Item Value
gene id AMCG00016997
gene name rnf123,LOC102204603
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41458372 ~ 41464821 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016997
ATGCCCCTGCAGAACCCCCCAGCTGCGGACCTCCTCAAGGCGCAGAGGCTGTTGGGATATGTCAAGAACGTGCTGTCCACCAGAATCGATGTCCAGGAGGGGAAGCTGGTGGAGAAGGAATGTTCCAGTTGGCAGCTGCAGGGGGAGCCCACCGTGCTGGTGACACTGGCCCACATCTTCAACTGCTTTGCCCCCCTCATGTGTAAGGTGTACCTGGTGGAGGACGTCCTGATGAACTTCCTGCTCGGTATTCTGGAGGGGGGCGGCTCAGTGGATGAACACCCTCTCATCCAGCAGCTGTTGGACCTCTTCTGGCTGCTGATGGAGGACTACGAGGTGAATGAATGCCTGAAGCAGCTGATGATGTCACTCCTGAGGGCCTACAGATTCTCCCCCATCATCCCTGACCTGGGCTTTCAGGACAAGTGTAAATGCCTGGTCTGTTTGCAGGGGAAGGACGAGAGGGAGCCGCGAGAGGAGAGCGCTGAGGAGAGACTGAGACGCCGGGCCTATGAGCGTGGCTGCCAGCGTCTTCGCAAGAGAATTGAAGtGGTGGAGGAGCTGCAGGTGCAGATACTGAAGCTTATGCTGAACAACAAGGACAAAGGGACGGGGGAAGCCTCCCGGTACATCTTCCTGAATAAGTTCCGCAAGTTCTTGCAAGAGAATGCCAGCAACCGAGGGAATCCCACCGTGCTGTGCCCCCCGGAGTACATGGTTTGCTTCCTGCACCGCCTCATTATTGCTGTCAGGAGCTACTGGGACGAGGGCAAGAGGAAGACTCCAGGGACCATAAGCAGTGAA

Function

symbol description
rnf123 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF123, partial

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016997 True 804 mRNA 0.57 8 41458372 41464821

Neighbor

gene id symbol gene type direction distance location
AMCG00016998 rnf123 coding upstream 1170 41450255 ~ 41457202 (+)
AMCG00016994 NA coding upstream 11762 41433692 ~ 41446610 (+)
AMCG00016995 NA coding upstream 32312 41402757 ~ 41426060 (+)
AMCG00016989 NA coding upstream 997483 40443930 ~ 40460889 (+)
AMCG00016988 NA coding upstream 1177985 40265941 ~ 40280387 (+)
AMCG00016996 rnf123,LOC107661915,LOC107726274 coding downstream 11745 41476566 ~ 41496271 (+)
AMCG00017000 NA coding downstream 193768 41658589 ~ 41670377 (+)
AMCG00017011 NA coding downstream 478728 41943549 ~ 41952515 (+)
AMCG00017010 NA coding downstream 488926 41953747 ~ 41957167 (+)
AMCG00017017 slmap,slmapa coding downstream 602051 42066872 ~ 42069674 (+)
G17424 NA non-coding upstream 212853 41245302 ~ 41245519 (+)
G17419 NA non-coding upstream 241563 41216495 ~ 41216809 (+)
G17381 NA non-coding upstream 1173600 40268425 ~ 40284772 (+)
G17361 NA non-coding upstream 1667805 39790089 ~ 39790567 (+)
G17274 NA non-coding upstream 2378475 39079415 ~ 39079897 (+)
G17482 NA non-coding downstream 137127 41601948 ~ 41605391 (+)
G17491 NA non-coding downstream 206557 41671378 ~ 41673353 (+)
G17498 NA non-coding downstream 223189 41688010 ~ 41690199 (+)
G17514 NA non-coding downstream 248989 41713810 ~ 41716989 (+)
G17518 NA non-coding downstream 277529 41742350 ~ 41742773 (+)
AMCG00016979 NA other upstream 2203882 39239073 ~ 39254490 (+)
G17193 NA other upstream 2954740 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 6254140 35158597 ~ 35204232 (+)
G16550 NA other upstream 7357509 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 7358776 34093276 ~ 34099596 (+)
G17697 NA other downstream 926476 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 2661393 44126214 ~ 44137931 (+)
G18192 NA other downstream 3189831 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 3484213 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 7907201 49372022 ~ 49382218 (+)

Expression


Co-expression Network