AMCG00017007 (arhgef3)


Basic Information

Item Value
gene id AMCG00017007
gene name arhgef3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41713811 ~ 41733567 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017007
ATGAAAGGAGAAGTGCTAGGTATCTCTTGTCCAGGGGGGCTTTCAGCAGCGGCTGCCCAGTGTCACAGTGGGATGGAGATCTCAAGACTTAAGGAGCCCAGTAACAAGCGAGTGAAGCCACTGTCCCGGGTGACGTCCCTGGCAAACCTGATCCCGCCGGTGAAGGCCACTCCACTGAAGCGCATTGGGCAGACCCTACAGCGGTCCATCAGCTTCCGCAGTGAGAGCCGGCCTGAGATCTTCACCCCGCGCCCATGGACCCGCAGTGCCGCCCCGGCCAGCACCAAGCGGCGGGACAGCAAGCTGTGGAGCGAGACCTTCGACGTGCGGCTCAACCAGATGCTGACGTCCAAGGAGATCAAACGGCAGGAGgCAATCTTCGAGCTGTCCCAGGGGGAGCAGGACTTGATTGAAGATTTGAAGCTGGCAAAGAAGGCCTATCACGACCCCATGCTCAAGCTGTCAATCATGACCGAGCAGGAGCTGAACCAGATTTTCGGCACTCTGGACTCGCTCATCCCCCTGCATGAAGATCTCCTGAGCCGTCTGCGAGAGGCCAGGAAGCCAGATGGATCGACAGAGCACATGGGCCACATCCTGGTGGGCTGGCTGCCCTGTCTGAACTCCTACAATAGTTATTGCAGCAACCAGGTAGCAGCCAAGGCTCTGCTGGACCACAAGAAGCAGGATCACCGGGTCCAGGACTTCCTGCAGCGCTGTCTGGAGTCGCCCTTCAGTCGCAAGCTGGACCTGTGGAACTTTCTGGACATCCCTCGCAGCCGTCTGGTCAAATACCCCCTGCTGCTACGCGAGATCCTCAAGCACACCGCTAACGACCACCCTGACCGGCAGCACCTGGAAGAGGCGATTAACATGATCCAGGGCATTGTGGCAGAGATCAACGTGAAGACGGGCGAGTCCGAGTGCCAGTATTATAAAGAGCGGCTGCTGTACCTGGAAGAGAGCCAGAGAGACCTGCTGATTGACAGCTCCCGCGTGCTCAGCTGCCACGGAGAGCTGAAAAACAACAGAGGCGCTAAGCTGCACGTGTTCCTGTTCCAGGATGTGTTGGTGGTCACGCGTGCTGTCACACACAACGAGCAGCTGTGCTACCAGCTGTACCGCCAGCCAATCCCAGTCAAGGATCTGCAGTGGGAGGACCTGCAAGACGGAGAGGTCCGATTGGGTGGATCCATCCGCGGCGCCTTCAGCAACAACGAGAGGACCAAGAACTTCTTTCGTGTGACTTTCCGCTGCGGCTCACAGACCCAGTCGTACTCCTTCCAGGCCAGTGATACCTTCAACAAGCAGCAGTGGCTCAACTGCATCCGGCAGGCCAAGGGTGCAGCCGGGGGCGGTGACCCGGATCCCCAGTCCCCTCAGTCCCCCGTGCGGGACACCCCCAAGCCAGAACGCATGGACCAGAGTGACAGCGAGTCCTCAGACTGTAGCATGGACACCAGCGAGGCGAGCGCAGACTGCTCTCGGATGGAGGGCACAGACTGCAGCCGGCCCATACAGGTGTGAGAACTACAAACCCGGTGCTGAGTCTTACCTGTACAGTATTGGAACCCACCGCCGCAGTTTATGAAAAgcacttcttttttttcaaatgtttgtttttgttttgtttagtttttttgtttagttttttttttaaccagcaTCAGTGCGGCTTCTCTCATCTGTCGTGTTTTTCTACTAGACTGTGGTGTTGTGAGTGTGGGTCCTACCTGGGTCCCTTTCTCGGACCAGCAGGGAAGAGGGTGACAGCAGCTCTGGCTCCTCAGGATTCTTGTTTGTGGGTTATATTTTTCCCCCTGCCTTTCCGGCTGTCTCtctctggggtggggggggggaagcaggGAGCCCCTGCCGCTCTGCTAGTGAGGCCTGCAGTCTTGGGACAGAGAGATCAGCTGACACTGAGGGAGAGCATGGTGGGGGAGGGAGTGTTTGCCATCCTGCCATCGACTCACCAGGCCCCAAGGACACTGCTATCTACCACCTCACAGTACTGTTGCCCACTTACTGACAAAATCACAccaatatgtatatgtattagtgtgtatatatgtataagtatgtgtgtgtgtgtgtgtgtatgtatatatacatatacatatatattgtttatagatatatattttagaatctATAGTGTTTACATCGTATCCAGACAATGACCAGCAGAATGTTTTTAGGACAATCAGTAGAGCATTTGGGCATGGTGGGGAAAGCTGGCAGTAGGTTGATTTGTACCTGCTGGGCTGACTGTTTGGGTGGGGAGGTGCTCTATTACTGGAGGAGTGTATGGATGGAGGGGGGGGTTCAGGATGTCACAATTGGGGTTGGGATGAGGGCACACTTGGATAATTGACCATTTGCTGTGATTTCTTGTGAAGGGGAGGGGGTCTGGTTTCCTGTGCTTTTTTCTCTCTACTACCCTTGTGTGCTCAGGACGAAGGATGAACTATGAACTCGGTGCTGAGTATTGGACTTGGCCGAGGCAGCCTCATTCACAGCACTTAGCATCTCACTCCGAGTGCCTGCCTGCCATTGAAAGATTAGAGATCCAAGGCCACTTGCCCGGCCAGCCCTACGACAACCTAGGGTTACCATCACTGGGTAATGCAGAGTGGAGTCAGTCCCACAGGGGATTATAACCCAGGATGGCAAAGGTGCCAAGGGGGGCAGAAGGAAGCAATTGGATCTCAAAGTTAGTCTTCAGTGTCGACATCGCACAGTGAAAGAGAAATACTTGGAGAAACAGCAGTAAGgaaaaatcttttaaataagCTTAATAGAAGGATTTATACTTCACAGTACTGTGTATCAtgactaaaaaaaaatgaaaatgtttcctttctgGTGGAGGATTTTACTGATCAGATGAGAAGGGACTAGAACCGGAGCCCTCTGTGACTGAGGTGTGAGGAGACTTACCCAGCATGCCCTGTCCCTAGCCTGCTCTGTTCTAAGAGGAGTCTGAACACTAGATCGCACCAAGGGCTACTCAATGGGCTTtactccagactgcaagttaaCCTAAGTTGATTGGAATGAGGGAATCATAAAGAGTATATAATTTGGCCATAAAATCCTGCTTATTTACTCCGTAGCTCTTTTTCAgatcaagtttttgttttttcatccctTGGCAGGATTGGAGTGGCTTACTTTGTAGGCTGCATTGACAGAATTGGCAGACTGTAGCAGTATTGCTGTAGAGATGTAAAAGGAGCAATCAGCAGCTCCTCATGTCTGACCCCTCTGAAGCCAGAAATGGAAACTGTTACCGTTTAGGGTCTTAGGTTTGTACAGGTGGTGGGAGTGAGTGTTAACGAATCGCACGGAACAGAACATGTACAAAAATAGCCATCAGCAGGTGAAACGTCTATTGTGTAAAACTGTATAATAAATCATGTGCAGAACAGCCAGTATGATGTAGGTTTGGGTGTTTTTACATCAGGTAATCATTTGCAGTGTAATTGCCACCACATTACACTTAAAAGAGAAGCAGAAGgtaattattacaatttaattaaatactgtagCTGTTCATGCCATGTACTCTGCAGTGCAGCCGTAGTCACTGGATTTGTGGTGGACTGTCCCATGACCGCACAAAATATGACTGCTAAATTATTGCCAAAAATCtttgtgttcagttttttgtaaTCTCATGTGTACGTTTATTTTTGGAGtaatgtttgtgtctttgtttttgtataaaagTCACATGTGTTAAAGGAATCAATGTGGCATCATAATCACTATAAATGATCCAAAATAtatgccttttttctttctttttaaagaaaagtattgtTCAGATTTATCCTctagaacatttatttatagtttttacaCACGGtgaattgctttttttgtttttgttttctctcatgGTTGTTTGGTAATGTTCTTTGGAGAGGTGACTGGTGGGGGTTTGTAAGTATCAGATGGAATCGGGTGGAAGAAGCTGAAAGATAGGTTATCAGAATGTGTCTGGAAGACTGgactgtaattgttttgttttttcaaaaatattaaaaaggtaaaGGACATTTTTCTCAAGTGTTGTGAAGCTTAAAGTATGTTGAAAGATTCTGTGAGACGAGAGTTAAGAGAGGAGATAATACTGTTGTATAATGAGCTTGAAGCATTACCAAATAAATGACATGAACTGa

Function

symbol description
arhgef3 Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within myeloid cell development. Predicted to be located in cytoplasm. Orthologous to human ARHGEF3 (Rho guanine nucleotide exchange factor 3).

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 3 isoform X1

GO: NA

KEGG:

id description
K20683 ARHGEF3_8; Rho guanine nucleotide exchange factor 3/8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017007 True 4193 mRNA 0.49 10 41713811 41733567

Neighbor

gene id symbol gene type direction distance location
AMCG00017004 NA coding downstream 11715 41673755 ~ 41702096 (-)
AMCG00017001 ip6k1 coding downstream 103911 41605415 ~ 41609900 (-)
AMCG00017002 gmppb coding downstream 117408 41587123 ~ 41596403 (-)
AMCG00016999 NA coding downstream 183662 41528656 ~ 41530149 (-)
AMCG00016993 LOC106583731,LOC105007334,LOC107661916 coding downstream 605650 41106691 ~ 41108161 (-)
AMCG00017009 NA coding upstream 51 41733618 ~ 41749556 (-)
AMCG00017003 NA coding upstream 77836 41811403 ~ 41824180 (-)
AMCG00017008 NA coding upstream 116939 41850506 ~ 41853012 (-)
AMCG00017006 appl1 coding upstream 123147 41856714 ~ 41877112 (-)
AMCG00017005 NA coding upstream 144049 41877616 ~ 41885856 (-)
G17505 NA non-coding downstream 108416 41601924 ~ 41605395 (-)
G17423 NA non-coding downstream 468586 41244926 ~ 41245225 (-)
G17414 NA non-coding downstream 835746 40873372 ~ 40878065 (-)
G17384 NA non-coding downstream 1428988 40280538 ~ 40284823 (-)
G17383 NA non-coding downstream 1447550 40264597 ~ 40266261 (-)
G17755 NA non-coding upstream 810793 42544360 ~ 42549418 (-)
G17754 NA non-coding upstream 816758 42550325 ~ 42551773 (-)
G17910 NA non-coding upstream 1502238 43235805 ~ 43236036 (-)
G18015 NA non-coding upstream 1899654 43633221 ~ 43633422 (-)
G18066 NA non-coding upstream 2103610 43837177 ~ 43891907 (-)
G17421 NA other downstream 496580 41216651 ~ 41217231 (-)
AMCG00016959 NA other downstream 3654872 37875250 ~ 38058939 (-)
G17032 NA other downstream 3955340 37758157 ~ 37758471 (-)
AMCG00016938 NA other downstream 6314781 35395992 ~ 35399030 (-)
G16563 NA other downstream 7605870 34106690 ~ 34107941 (-)
AMCG00017014 NA other upstream 203359 41936926 ~ 41938563 (-)
G17842 NA other upstream 1075144 42808711 ~ 42864616 (-)
AMCG00017051 NA other upstream 1215424 42948991 ~ 42974433 (-)
AMCG00017061 NA other upstream 1546670 43280237 ~ 43286603 (-)
AMCG00017060 NA other upstream 1572130 43305697 ~ 43308626 (-)

Expression


Co-expression Network