AMCG00017010


Basic Information

Item Value
gene id AMCG00017010
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41953747 ~ 41957167 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017010
GTAGCGATTTGCCGAAATGCATGAAACGTGTCGAATCTGCGATCCATCAACGGTGCGCGTTTTACTCTGCGTTACTGTTGCCGTATCAGCTGATTCAATTTAATTCAGTGCTGCAAATTGTGCCCATGTATAGGTATTTGGCATCTAATATCAGACATTTTTCTAACTCCGTGTCGCCTGGCTTGTTCGGGATCGCCGAGTCACTGTGGGGACGAGCAAATAAACTCTGTCGGCGATCCTACGCAATCATGGATCGAGCGGTAGTGCGCTGCGTGCCCTGCGAAAGCAAGCTGACCATCTCGTTCACTCTGGACGGCAACCAGAAGCACATGCTCCGGGATCAGACGGAACAGCTGGGCAGAGCGCTGTCCAGGATCGCCAACAGCGCCGTCAAGGGCCAGGCCAAGGCGAAGAAGTCCAAGCGGAATAAACCCGAGCAGGCGGACGTGCTGGACCCCGTGGTGAAGCTGTACTACAAGGACGACTGTGTGGCCGACGACGCGCTGAACGCGGACGCCTGGCAGGACGGCGCCGTGCTGCACGTCGGAGACAGCAAGTACAGGGTGGAGAGAAACCCGCCGACCTTCACCAACCTGGAGCTGCCCAAGTTTCTGTTAGCCGGCTTCCCGGTCTGCATCAAAGTGGACATCGAGTTCGGAGAGCTGAGGTACTCCCTGTTTAAGTGGTTTAAGGAAAGCATCCCGGATGCGGAGAAAAACGGCCTGGCACAGTGCTGGGTAGAGGCGGGCAACGAACGGGTCTTCACGCCGTCAAATGTGGACATTGGTCTGAAGCTGAAGGTGCAGTGCACCCCGGGGAACAATGACAGGTTTGGGCTTTCTAGGGAATTGGTGACGGCGACCACCGTGGAGGCAGGTCCGGGTACCTGCACGTTTGACAACAGGCACATGTACACCAACAGAGTGACGGACGATTCCACTATCAGAGCAGTGTCTTACAACATTTTAGCCGACATATATGCGCAAACCGAGCTCTCCAAAACGGCCCTGTATCCATACTGCGCCCCCTACGCCCTGGAAATCGATTACAGACAGAGCCTGCTCAAGAAGGAGCTGGCCGGCTACAACGCCGACGTCGTGTGCCTCCAGGAAGTGGACAAGGGCGTCTTCTTCGACAGCCTGTCGCCGGCGCTGGACGCGTTTGACCTGGCCGGGCTCTTCAGGATAAAGGAGAAGCAACACGAGGGTTTGGCCACGTATTTCAGGAGGTCCAAGTTTACCCTGCTGAGTCGGCACGACATCATGCTGAGTGAGGCGTTGGTGTCCGACCCGCTGCACCGGGACCTGTTGGAAACGGTGTCCACTAACGCAGCCCTGAAGGAGACGCTGCTCCAGAGGTCCACGACTCTACAGGTGACTGTTCTGCAGTCTGTCAAAGATGCCTCCAGAAAACTGTGTGTTGCTAATACCCATTTGTACTGGCACCCAAAAGGCGGACATGTGCGGCTGATCCAGATGGCCATCGCCCTGCAGCACCTCAGCCAGGTGGCATCCGAGGAGTACCCTGGCATCCCCTTGCTCTTCTGTGGGGACTTCAACAGCACGCCTTCCTCGGGGATGTACCAGCTGGCCACTCAGGGTTCTGTTTCTGAGAGTCACCCGGACTGGGCGtcagaagagcaggaggaactCTGCTCCCTAGCCCTGACTAACCCCTTTCAGCTGCAGAGTGCCTGTGGGGAACCAGCCTACACCAACTATGTGGGCGGCTTCCATGGCTGCCTGGACTATATTTTCATGGAGCCTCGAGCCCTGCAGGTGGAGCAGGTGATTCCCCTGCCCAGCCATCAGGAGGTCACCACACACCAGGCTCTGCCCAGCGTCTTGCACCCCTCTGACCACATTGCGCTTGTCTGTGACCTCAAGTGGAAATGACCGCCTCCGACCAAACatcagagctggagctggaaaCTTCAAATGCAAGGTGTCTCCCAGCCCAGCCTGCTCTCCTCATCTCGGGCAGGGGCAGCAACAGTGTGGACCTCTCATTGCCCTGCCCACCTAGCCCATCCTGGAGGGGTCTGCTGTTCAGGCTGGAAAGTGTAGGTCAGTCTCTCTGCCTATTCATCCTTAGTCTTTGTGCAAGGGAGCATAACTGTTCCACATCATCTCTTGGGTATATTAGGTCCGCAGTCCTCATTAACAAGGTAAATGCACACACTGGCAGTTACCAGTTATGAAATATGCAGTAGGAGTTTCCCTGCTCAGTCTCACACGCCTCACCTGCTCCACGAAAAACATGATGTCTAGAGGAcgaccacaggataaacactaCTGCTGATAATTGTGAAGAACTTTGAGACTCTGAAATTCCTTGGTAATTATGATCATGTTTTTTTGGGaattgtcaataaataaatcttctcCTCTCTGGGCTATTAGAAACA

Function

GO: NA

KEGG:

id description
K19612 PDE12; 2',5'-phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017010 True 2407 mRNA 0.55 4 41953747 41957167

Neighbor

gene id symbol gene type direction distance location
AMCG00017011 NA coding upstream 1232 41943549 ~ 41952515 (+)
AMCG00017000 NA coding upstream 283370 41658589 ~ 41670377 (+)
AMCG00016996 rnf123,LOC107661915,LOC107726274 coding upstream 457476 41476566 ~ 41496271 (+)
AMCG00016997 rnf123,LOC102204603 coding upstream 488926 41458372 ~ 41464821 (+)
AMCG00016998 rnf123 coding upstream 496545 41450255 ~ 41457202 (+)
AMCG00017017 slmap,slmapa coding downstream 109705 42066872 ~ 42069674 (+)
AMCG00017018 NA coding downstream 137244 42094411 ~ 42100315 (+)
AMCG00017022 flnb coding downstream 152862 42110029 ~ 42110696 (+)
AMCG00017021 flnb,LOC107712990,LOC107657976,LOC107680511 coding downstream 199512 42156679 ~ 42210307 (+)
AMCG00017019 NA coding downstream 255442 42212609 ~ 42213383 (+)
G17518 NA non-coding upstream 210974 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 236758 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 263548 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 280394 41671378 ~ 41673353 (+)
G17482 NA non-coding upstream 348356 41601948 ~ 41605391 (+)
G17580 NA non-coding downstream 19228 41976395 ~ 41978666 (+)
G17882 NA non-coding downstream 1095919 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 1278653 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 1437126 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 1512903 43470070 ~ 43470846 (+)
AMCG00016979 NA other upstream 2699257 39239073 ~ 39254490 (+)
G17193 NA other upstream 3450115 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 6749515 35158597 ~ 35204232 (+)
G16550 NA other upstream 7852884 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 7854151 34093276 ~ 34099596 (+)
G17697 NA other downstream 434130 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 2169047 44126214 ~ 44137931 (+)
G18192 NA other downstream 2697485 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2991867 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 7414855 49372022 ~ 49382218 (+)

Expression


Co-expression Network