AMCG00017011


Basic Information

Item Value
gene id AMCG00017011
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41943549 ~ 41952515 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017011
TCTGGTTGTCTCCATGGCAAAACACAAGACATGTATGCTGCTTATgttaatattatatgtttttctaCATCTTTCACAGTGCTACAATCAAGTGCCTGCTGTCGTGGGTAAGAGACCACAAGTCCACTTATCCCAAACCATCAACGTTGGAAATGATGGAATGGGCATACAGAACAACAGTGCCTCAACAAGAGGGAGTCATTTGGCTACAGTTGAAATGCCTCTGAGAAGAGCACTGCAGCCTTCAGGTTGGCCATCACGCGCCCCTCCCAGATCTAGAAGAAAGCTCCTTCAGTCCTCAGGCTCTCTGCCCTACTCACAGTTGAATGTGGCAATCAATGGCAGAACCTGCATCCTCTTCAGAGCTAAGAAGTTGGCGATAAGGTTTAAAAACCACACACTGGTGGACTTAACGGAGAGGATTTTTGGTCCCAGTGCTCTAGTGGACACCAAAGGCTCCACCTGCAGTAAAGACAAAGCCATGCTCACTCTGAGATTTGGTGACGTGGAAGACCTCAAGGGACTTGTCATAAGGCTGCTGATGTCCAACATGTTTTATGAGTCAGCTGGTCAGAACTGGTTCACCCTGGACAGTGTGCACATCCATTATAACTCCACACTGGAGGCCACCTTCAATGCCACAGAGGTCTATGCTCCTGCCACCTACTCTTACCACTGCCAGCATGTCAGCAGCCTCCAGAAATATGACACACTACTGGTGCCCAGCTCTCACAGTGACAGCTCCATGCACTGGCACATCACCTTCACTGACTTTCAGATTCAAGCCTTCAATGTCCAGTCGGATCAGTTTGCCTCTGTCAGTGACTGTGCCACCTTCTTCACCCCTGCCATTCTCATGGGTCTCATCACCTCCCTCATCCTGCTGTTAGTGCTGGCCTATGCCCTGCACATGGTGGTGCACCTCAAGTCCATCGACCGCTACGAAGAGCACAAGACCACCGTCTACTTCCCCCGCAGCCCTGAAACCGAGTGTGCAGACAAGTACAGTTTGTAGGAGGCAAagccccccctcccaccctgaGAGACGATTCTGCAGAACTCGGTACATCACAGTCCAGTGGCTGTCTTGCCAAGGGATCCACAGCGCTgtgtgaaaaaaggaaacactgcTCTGACTCTCTACCCCACTGTGGCACCCAAGCTAGCAAGGCCTAGAGAGTCCAGGCAGAGATCAGCCAAGCTGAACACTAACCTCCTTGGTTTAAGTGCTCAAAAGCAGCTGACTGGGTTCATAGTGTACAGAGATGTTGAAAGATACTGGGAGGACACTGGTCTACTGTTTCCCCTTAACCATGCTTGGACTGTAGAAGCAGAGTGGAATCGTGAATCAAGCCCTGCCAGAGGTGGAGAAGAGACCAGGGAAATGATACTttcaacataatacaattatgtgGTATTTGAATTGGTCTCCGAAGTGTCATATCAAAGCAATTCCCAGAGAATAACAGCAGTTTCACCTAAATCTTCCAGCTTTACTGAACCCACAAGAAATATGTAGGACATCTGTACACGTGTCTTCATTTGGTTTGTCACTGTTATTAGTGTGGAAAATCatcattttagcatttttattaCCAGAACTGCAATGCTTTACTGTTTCAGAAGAACTTACAATGAATATCTTGATTCtgcctgtctgtttgtctgcttTGGACTTTCACATCAAAGAACCTTTTAACATgttcaattgaaagcaatttTGGATCATGGCAGCTTTTTGATGCATTAAGTTCATCGTCTATTTATATCACACCATCGATACCACTATAAGAGAAGATAATGACAAGATGTGGGTGCATAAAGTAAATTTTGCATGCCAGTGGTTTacaataatgtgtgtatatggcAATAATGACACTGGAAAAAATCATTAGCATTGTGCAATTGATTAGTCATACTAATGGAAAGAACAGGTTTTTATAACTACCAAGTGctgtaaatgaataataaactatTGTCAGACCATTGAAATATGtggtatttaataaaac

Function

GO:

id name namespace
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017011 True 2012 mRNA 0.45 7 41943549 41952515

Neighbor

gene id symbol gene type direction distance location
AMCG00017000 NA coding upstream 273172 41658589 ~ 41670377 (+)
AMCG00016996 rnf123,LOC107661915,LOC107726274 coding upstream 447278 41476566 ~ 41496271 (+)
AMCG00016997 rnf123,LOC102204603 coding upstream 478728 41458372 ~ 41464821 (+)
AMCG00016998 rnf123 coding upstream 486347 41450255 ~ 41457202 (+)
AMCG00016994 NA coding upstream 496939 41433692 ~ 41446610 (+)
AMCG00017010 NA coding downstream 1232 41953747 ~ 41957167 (+)
AMCG00017017 slmap,slmapa coding downstream 114357 42066872 ~ 42069674 (+)
AMCG00017018 NA coding downstream 141896 42094411 ~ 42100315 (+)
AMCG00017022 flnb coding downstream 157514 42110029 ~ 42110696 (+)
AMCG00017021 flnb,LOC107712990,LOC107657976,LOC107680511 coding downstream 204164 42156679 ~ 42210307 (+)
G17518 NA non-coding upstream 200776 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 226560 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 253350 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 270196 41671378 ~ 41673353 (+)
G17482 NA non-coding upstream 338158 41601948 ~ 41605391 (+)
G17580 NA non-coding downstream 23880 41976395 ~ 41978666 (+)
G17882 NA non-coding downstream 1100571 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 1283305 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 1441778 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 1517555 43470070 ~ 43470846 (+)
AMCG00016979 NA other upstream 2689059 39239073 ~ 39254490 (+)
G17193 NA other upstream 3439917 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 6739317 35158597 ~ 35204232 (+)
G16550 NA other upstream 7842686 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 7843953 34093276 ~ 34099596 (+)
G17697 NA other downstream 438782 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 2173699 44126214 ~ 44137931 (+)
G18192 NA other downstream 2702137 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2996519 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 7419507 49372022 ~ 49382218 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_05795264_05798555 ATP6AP1LB coding CI01000001 null 5795264 ~ 5799834 (+)