AMCG00017016 (dennd6a)


Basic Information

Item Value
gene id AMCG00017016
gene name dennd6a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41971193 ~ 42008349 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017016
TTACGTCGCTTTCCAGAGGTTGCAGCTGTACGTCTTGaattgtttgtgtgctttacCGGGGAAGTGGAGAGGGAGGCTGGcgaagaagaaggaaaacaagACAGTATTGCTGAAGTGCTATGGCCTTGCAGGGCCAGGAAGAGATAGGACAGCAGACCGAGGAGCCCGCAGACCGCCAGCAAGAGGGCAGCATCTCCCCGGCGGAGCAGCTGCCAGATGGGCCCGGGGAAGAAGAAGCGGACCCTCTCCTCCTGCCGTGGGACCGATTCTCGGCTTGGCTCCATTGCATCTGCGTGGTGGGCTTCGACTTGGAGCTCGGACAGGCAGTGGAGAAAACCAGTATTTGTTACCTGTCTTTCCCAGATTCCAACTCAGGGTGCCTCGGAGACACGCAGTTCTGTTTCCGTTTCCGCCAGGCGACGGGCAGGAGGATGTCCCTGCGCTGCTTCCTGGACCAGTTCGACAGAGATGCACCTGTCTACCTGAAGAGAGATCCAGGCCATTACTACGGCTATGTGTACTTCAGGCAGGTTCGGGATAAATCGCTCAAGAGGGGTTACTTTCAGAAGTCCCTGGTGCTGATCAGTAAGCTTCCCTACGTGACTTTCTTCCACTCTCTGCTCCAGCTGATGGCTCCAGAATACTTTGAGAAACAGGAGCCCTGTCTGGAGGCTGCTTGCAATGACATAGACCGCTGGCCCGCCCCATTTCCTGGGAGAACCTTAATCCTACCAATAATGGGAGTCGTTATGAAGGTTCGGATTCCTGCCTGCTATGACAAGCCTGGCACCACGCAGCTCGTACAGGCCACACAGAGTGACACCCAGGTCTCCGTTGTCCTTCCATCCGTCTATGAAGTGGAGGTCTTCAGGTGTTTCTGCCCTGTGTACTTTCACATTCAGATGCTATGGGAGCTGGTGTTGCTAGGGGAGGCCCTGGTCGTTATGGCACCCTCACCTGCAGAATCCTCAGAGACTGTGCTGGCCTTGGTCAGCTGCATCTCCCCCCTACGGTACTGCAGTGATTTCAGGCCCTACTTCACTATCCACGACAGTGAGTTCAAGGAGTACACCACTCGTACCCAGGCCCCGCCCTCTGTCATCCTGGGAGTGACTAATCCGTTCTTCGCAAAAACACTCCAGCACTGGCCGCACATCATCCGCATTGGGGACATGAAGCAATCAGGAGACATCACTAAACAAGTGAAGGTGAAGAAACTGAAGAACCTCAAGACCCTGGATTCTAAGCCAGgTGTGTATAGTGCTTACAAGCCATTCCTTAACCGAGATGAGGAGATAATCCGTCAGCTACAGAAGGGGATCCAGCAGAAACGCCCACCAGCTGCCCAAAATGCGATTCTTAGGCGGTACTTCTTAGAGCTGACCCAGAGTTTCATCATTCCCCTTagCCCTCCCCAGTTGCGTCCGTTCAGTCAGGAGGAGTTCATGAAGACTCTGGAGAAGGCTGGACCCCAGCTTACCTCACGCCTCAAGGGAGACTGGATCGGGCTGTACAGGCAGTTCCTGAAATCTTCTAACTTTGACGGCTGGTTTAGGACACGCAGGAAGGACATGACCCAGAAGCTGGAGGCTCTTCACCTGGAGGCCCTGTGTGATGAGgaTTTGCAGATTCGAATTCAGAAGCACACCGAGGTGGAAACTGTGGACCTCGTGCTGAAGTTAAAAGACAAGCTGaCACAAGCAAAGCGGGATCAGCTACCAGTCAAGGCTGGGACGCTGACCAAACTGCAGGATCACATCGAGGCCGTGATCCTGACCCTGCCTGAGGACTTGCAGGGCATCCTGCAGAAGCCAGGAACCCCCTGACACCTGGCACCCACAGGGCAGGACAGATGTCACTGGCAGTGTGGCACAGATTCAGGGGCAAACAAGGAAGGGAGAGGGCAGCTGCATAAACTAAACTACTGGGACCTGGGCCTGGTAGAGGAGTGCTCCACACTGCCTGTGAACTGCAATTTTACATTAAGTGCACTTGTAACATGAACCGAAGAGCCATGTGCAGCAAATACAAGAGAAATTTGAAATGTGCAATGCTGgcattgcaaaaaacaaaccgaaAGCCAGAAACTGTTTTATACTGCACTGCCTGCATTGGCTTGCAGTGAGGAACCTCTGTACTGCTGCACCACCTCACACCAGCCCACCCACCAGCCTGTCCATGCTGCCATCATTACCCTTCACCTCTCGACAGCCTTTCACCCATTTACAGATAAAGCACTTGTTCTTGCAGACTGCTTTCATATCAACGGGCAGTGGAAGTAGGTAGCTTAGGGGAGTCCTGTTCAGCATTAAGAAACTCTGTCCACACTACTGTCCCAGAGTTTCCTACAGGTGCTGGAGATCCTGGAAGATCCCACACTATCTTCCAGTCCTGGAAACCGTATGGAAGAATGCTAGCAGAAGTTGTTTGACAGATATACTTGGTGTAGACCAAAAGCAGGTACATGTTCATACTGTTGGTAATAGGTTACTAAATTCAAATGTGTGGCAAGTTAAACTGAAAGGGGTGTTGTGGATCAGTTGATCAATTAAAGCTGTTGGCAAGGTGACAATGTGCTATAGAACACCACTAAAATATCCAGGGATGGTGGGCAATCTGCATCCCTCAACTTCAGATGTTTAAGTATGTCTTATAAAGCCTTGGGATGTTTTTTGCACTGACATCTGAAAAATGCACTGTTACTTATCAGAAAAGAGATCTAAAAGAACACTAACCTAGAACAGTCTTTTGACTTCTCTCCTCACTCTAAGTAACCGATAAGCATCCCTGTCCAAAAGTAATAGGACAGACTAAATGCCTAAGGCCTTAGTTTCACAAATTGAATAGGATTTATCTCatatcctgttttttttctttaaagaaagaaaaataacttgtatCTATGTATGAGTTCCTTTAATGCCAAATGTCCCAGAATCCTACACAGATTCTGTAGCAAGGTAAAAGAGGTGATTGAGGATGGGCCCATATAAATGATTTCTATACCAATACTAAATGGGTTCCTAGCTTTTTAAAGTAACAAGACTGAACTTGTAATACCACAGCACTACTACTACTTTTTCTCCCCTCCTCGCTGCACTAATTGACCCTAAAGCCATCTGCTAAACATATTTCACCTCAGACCTGGCCAGTCCAGTGTTTGAAGCCATTTAAAAGACTGGGTCTTCCtaatcttttccattttaaatctttatGATGGGGGAAAGTAAAGGTATTTTAAGGTGTATGTTGGGAGGCCTGGTCTGTGAATGAACTGACCATGAATGTACCTCAGTGTCTTTTGATTTTACCTACATCCCTCACTCATTGTAAGGCATTGAGATTCACATGTAGATGAAGTACCCCTTTCAAAGCTTGGCTAGTTCAGTGGTTCAAGAAGACCTGAAAGATCCCTtctttacaattataatttaatgctGTGGTTAAAATCTTTGAGGACCAAAAGCATTAACCTTAGTACCAGAGGTGAAAAAACTCTTTGATTGCAATCATAAACATTTGGGGGGCACTGGGACCTGGGCTTTCCCCATAGAATCACAGTCCCaccagtctgtttttatttgcactGTAGGCCTCATTTGAAACCAGGCCAGTGGAAGTGAAAGGTTGTGGTACAGCTGCACTGTGCCTTCCAAACCCAAATCTGCAGGGGATTTCTATGTCAGTTACTGAAGGGATACGTTTGAAGCTTCTTGTGTTTCTGCAACTATTTTTCTAAGGCGGCTTCGTATAACTGGTCATACCACTTTGATTTCTAGCCGTTTTAACATATATTGTGCAGTAAAACTGCAGTTTACCTTTCGAGTGAGACGTACTCCAGTTGTCATAACTTTCTTGGTGCACTCTCCTGAGAAAGTGGAAGCAGCTGTGtatgttgaaattatttatttttttaagacatcTTTCAGACCTGTCAGTCTCCTTATTACAGATGCAGCTTTCACCAAGCAAACCCCATCACAGAATCAGTGTTGACTCAGAGTGTTATTTGGTTGTTAATCAACCACtactgctttaaaaagaaaaagaaaaaactgaaaagactATAACCTATTTTAACAtgcttacattttatatagaaatCTATTCTCCTACTACACTATTATATAACTGACTTACTGGTATACTACAGAagtcaaaacatatattttactatttaaaaaacGGGGGAAAAAATGTATCGCACCAAAAAGGGCATTAACAGTCACCTATTTTAATAAACTAACATAATGTTTTTGGAAGCAGCCAGATATACAACACTGACTGAAGGCCTCTGTTTAATGGTGTCTGGATTCTCATCCTGTTTACCCTTTGAATTAAAGCCATAACCACTGACGCCCTTGGTACCTTGTTTTTAACACCCGTACAAATGGACAATTTCTTACTCACTGTATCTTTAAATTTCTGCTGtcagaaaaactttttttttttaactgataaataAAGTGACATCAGTAACTTTGTTTTGACctattgtgtatttttagttttaatgctattg

Function

symbol description
dennd6a Enables guanyl-nucleotide exchange factor activity. Involved in positive regulation of cell-cell adhesion mediated by cadherin. Located in recycling endosome.

NR:

description
PREDICTED: protein DENND6A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017016 True 4522 mRNA 0.46 18 41971193 42008349

Neighbor

gene id symbol gene type direction distance location
AMCG00017015 LOC108431611,LOC107680528,LOC107747489,LOC107597170,LOC108254969,LOC107559620 coding downstream 1546 41957610 ~ 41969647 (-)
AMCG00017013 rps23,rs23,LOC106566095,LOC107680479 coding downstream 29584 41939367 ~ 41941609 (-)
AMCG00017012 dnah12 coding downstream 35485 41886980 ~ 41935708 (-)
AMCG00017005 NA coding downstream 85337 41877616 ~ 41885856 (-)
AMCG00017006 appl1 coding downstream 94081 41856714 ~ 41877112 (-)
AMCG00017030 trappc6b,LOC107572779 coding upstream 502708 42511057 ~ 42514614 (-)
AMCG00017036 NA coding upstream 658363 42666712 ~ 42670113 (-)
AMCG00017041 NA coding upstream 680150 42688499 ~ 42712888 (-)
AMCG00017040 NA coding upstream 713523 42721872 ~ 42737952 (-)
AMCG00017048 NA coding upstream 801427 42809776 ~ 42815644 (-)
G17505 NA non-coding downstream 365798 41601924 ~ 41605395 (-)
G17423 NA non-coding downstream 725968 41244926 ~ 41245225 (-)
G17414 NA non-coding downstream 1093128 40873372 ~ 40878065 (-)
G17384 NA non-coding downstream 1686370 40280538 ~ 40284823 (-)
G17383 NA non-coding downstream 1704932 40264597 ~ 40266261 (-)
G17755 NA non-coding upstream 536011 42544360 ~ 42549418 (-)
G17754 NA non-coding upstream 541976 42550325 ~ 42551773 (-)
G17910 NA non-coding upstream 1227456 43235805 ~ 43236036 (-)
G18015 NA non-coding upstream 1624872 43633221 ~ 43633422 (-)
G18066 NA non-coding upstream 1828828 43837177 ~ 43891907 (-)
AMCG00017014 NA other downstream 32630 41936926 ~ 41938563 (-)
G17421 NA other downstream 753962 41216651 ~ 41217231 (-)
AMCG00016959 NA other downstream 3912254 37875250 ~ 38058939 (-)
G17032 NA other downstream 4212722 37758157 ~ 37758471 (-)
AMCG00016938 NA other downstream 6572163 35395992 ~ 35399030 (-)
G17842 NA other upstream 800362 42808711 ~ 42864616 (-)
AMCG00017051 NA other upstream 940642 42948991 ~ 42974433 (-)
AMCG00017061 NA other upstream 1271888 43280237 ~ 43286603 (-)
AMCG00017060 NA other upstream 1297348 43305697 ~ 43308626 (-)
AMCG00017067 sumf1 other upstream 1625421 43633770 ~ 43659602 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location