AMCG00017023


Basic Information

Item Value
gene id AMCG00017023
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42553219 ~ 42561656 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017023
TGGAGGTTTTGACTCCGTGTCGGAttgtctttctgtttgtgtCACGTTACCCTTGGAGCAACGAGGAAGTAAAGACATGCGTTTGTTGTCGGATAGGAGTGCCTTGAAAAGCCGGTATTACGCTGAACTTAGGAAAGCATTGAAAGCAACTCCTGCGTTTAGCACTGAGTGAGTGGCTGTAGTGCGTCATACCTCCGGTTCCGTGTTTCTGTTCACAAATAGGGCTTGACGGTTTGGTGCGAGAAggtgaaatatacatattacacTTTTTAACTGTGTTGGATTCACTCTTTATTGAACGAACgcacttttaattatttatggcATCCCGTTTGTGGAAGTAGACGAGTTCCAGCTCGGACACAACtgtctatattatattattatattcgCTGACTCTGGACTAAATGATGTGTTGCTGTGGTAGGACAACGAGAGACACGAAACGCAACGCTTCTGGTCTGAGTTACATTCAATTAAACGACGGTTCAGTTTTAATGGACTTCACGATGTCCGACTAGCATGCATCAATGGCGAAAGTTATACATGTGCACTTACCCATTTCCGCCTCAGCTGGGTAATAAACTCTCCGtgacttaatttaattatatttctgacCGTTTCTCGTCTCgtcttttgctgtttttgtttctcgaGTCGTGGATGTTTAACTTCATAATGTCAGTGAGAATGATGTGCGAACTACTGCTTACAAGAGGTTGTACTTGATTAAGAAAAGCCTgaagatatttgtatttatttttaatcttatctaaaatatatcttattttaaatatatattcgtcataattatttatttggagCTTTAGTTGCGTGGAAGATTAAGGTGGAACACCAAACCAATTATCCTTGACGAAGACAGCTGCGAGGTGTAGTGTACAGACTTGAAAACTCAAGCGCCGTGATGTGGAGTAGGTGTAACAACAGTAGTGATGTGCATAATGCTGTGCAGAGTGATGGGACACGGGATGCATACAACCACTCAGCGCAAAATGGTGATCCGAGTCCAGACCCGGCTGTGGATACCCCGGCGTCGGATGGCCTCCAGCTCTCGGTACCCAAGGGGATCGACTTGCGCCGTCGGAGGAAGCTAGTCATTCACATGGACCTCAACAACACCATCCTGGTCTCTGATGCCGTGACCAGGCAAGGCACAGTGGCTGCATTGGACTATTTTATATCCACAGTCACCTGGGGGAAACTGAATAAGCAAGGTAAATGGGAGTGCATAAGTGAGGcaccctccctccttcctccaTGCAAGGATGCAGTGAGTTACTACTCCCAGTTCGGCCGGGTCTCTGGGTTCACGGCTACAGCCGAGGGGAAGCGCTTCAGGGCCGTACTGGAGGAGCACCTGGCCCTGCTGCAGTGGCCTGGGGAGGAGCAGGACCGAGTGCTGGCGGTAAGGGGTGAGGATGGCCGGCTGTACCACTGGATACTGCCCTCCTTCTTCCAGCTGTTGCAGGACCTGGTGGCACAGGGCAGGGAATTCACCGTCCTCTTCCGCACCTTCGGAACAGACCTGCCCCGCGTCCTACTGGCCATGAACACCGTGCTAGCAGAAGGGACGCATCCCCTCTTCCCAGACCTGCCGATTCTTGGGCTGACCTTGAATGAGACGCTGGGGAAGATCCGTTGCAGTAAGAGAGACGTGGTTCTGACCCGGGGTTTGGAGCGTGTATCTGCGCGGGACAGCGAGAGGGGCCTGTACCACTACCTCAGCTCCCTGCAGGGACTGTGCGGCTTCCAGGACCATTTTGACTGGTGGGCCCGAAACTCCTACTCACTGCAGGGAGGAAAGCCCATGTGGATCGACCCCTTTGATCCCGATGTGCAGCACATCTTCATAGATGATAATATTCGAATGATCGATGAGGATACCATTGTCCATCCAAAGGTGTTTCTAGAGCCTGGTGGCACTCAGACCCGCACGGCCTCAACCTCTGAGCTCTATGATATCAGCCTGGTTCAGACTGATCTCCTCAGGGCCATTTCAGACCACTGCTACTTCTCCAACTGCATCCAGATTTGCGAGGAGAACTATGAGAGGAACCTGCAGCAGGCAGACAGCTAGAGCTCCTGCTCTGTACTGTGGTTACCTCTCCTACTGCACACTGCCACAGCTGAGAGACGGGCCTGCACTCTGCTCAGTTTGTCACAGTGATATTTCTTAGATGTGGGAAGCTTTATAGTTGTGAACAGACTTGTATCTGGTGTATAAGTCAAAGTTCACCCAAGCACAGGCAACACGGTGAAGGGCAGAATAATCTTTTTCTGCAAGTATCATTTAGGGGAAAAGCTTTTACTTAACACTTGACCGAAGAGGACATATAAAGACATAAGTGAATGATGGAGGTTTTAAACATTTGGGGCTGGTTTGTGTTGTAAGAATCACCACTAATGACATCAGTGAGACTTGCTGTGTTACCTGATACAATCTCTTTGCagaaacagttaaaatatagataatgcacatttcattgcttccattaaatatataaatgtgtttgagaTGTTGAGAGATGCAAAGTTGTAGGAGATATACAATGAGCCTTACCTAAAGAAGTGCAGTGGAGCGTTTTAGGCCATTATATATGATTGACATTTACAAGGATTTGCTGACGGTGCACAGACAGattgtgaagtgtgtgtgtatatacacagctctggaaaaaattaagagaccatttaacattgatttctaaacttggagtggtctcttaattttttccagagctgtacatattGAAGGTTATTTCATGGCAACTGTAACATACCCAGGTCCTGTAGCAATTAAACTGCTATCTCCAATAGCAGGTTGTAAAGACCGGTCTCCATTTATTTGTACACTTGCCGTTACATAATAGTTCTTTAAATGctatttaattgtgtgtgtgtgttggttgcGGTAAATGTCTAGACTTTCTATAGCCAAAGATAGAGGCATTAAAGTGTACGAGTTATTGCACTGTGTTCATATTGTTACATGTCCATATTGTACCTCCACTTTAACATTGAGGAATATCAGGGTAgtatgtaaagaaaataagaagtCTGAACTTTAAACCACTGAACAAAGCCTGGCAGTATTCCAGGGAACCTGAGacttatgaattatgaatgatTACCTCATGGGAATgaagtttaataaaatgacTGGATACTGCACATCTTAAAGTGGGCATGAATCCTACTCTTGGCACAAATCTTTATTGCTGTGTTCCAGATCCTACCAAATGTCTCTCCTTAACCTTCACAGATGTAGTCTTCAATCACTATTATTGTTTACCTGCTGGGTCAAATTCATAGATGTAGCTACAGATTTCTGACAATATAGGAAAGGTGGATTCAGTTAATAGTTTACTTTTTTCTGTGAAGGATATTTGCGTGATAACCTCCAGTCCCTATTAACAATAGCAGCAGTGCACTATTCAACATTTAAGACTGGAGATGTTCATTATCACGGTCATAGAAATAGGCCTTTGACTGGATTTACCAAATATTTCTGTAACCTTTCACGGTGGCTCCTCgatgtttaatttaacagaataggatgcttgtttttttttaagtgaaaaatgtGCTTAATAACCTGTGACATGCCATTAATTTCTGTAGAAATTCCTTTCAGCATTCTGTGAATTTCAAGGTTGTTCATACAAAGTGATTTTCTGACTGTACGATTGACCCCAGATTCTCGCTGCAAGATGTCTTGTGCTCTTTTCTTAGTCATTCCTGCTTATGTTCCACTGTCAATAAAATCAATTGCAGCTGGATTATTAACGTCATCTTCTCCCTCCAATAActagagattttgtttttggtattcaGCTGTCGTTCATGGTtccaacaaacaataataaaaaatagttgAATCATACTTATATATGTTCCTTTAAATGCATTgccatgttttcaaatataaatgcaaGAAATCAGACCTGGTTAGACTTTTTTTATGAGGAGATGGGGCATGTTTGATATAATTAGCTACTTAAATGGTGCTGCAATCCTTCCACTGTGCTGGGGTCATGGAAAAGTGGAGAAGGGCTGTTTTCTCTTCAGTCCCCCCCCTGCCCCATTTAGTTCTAATGGGAACTAAAATCTGCCCAATGCACAGAAGAAAGTGCAAACCAATGATACACTAATTAGAGGGTAGTTTAATATATGAAAGTCATGTATTTAATCAAGTAAAGGGATCCTGTTTAAGAAATGGTTCAAATACAAGCGTGTTCCTTGGTGTTAAGTGTGTTCTCTTCAGTGAGACATATGTATAAGGTAGGTCTGATTAAAGCACAATGTGACCAAATGGGTCTGACTAAAATCATGCATTCACCCTCTTTCTGGATGACATCACTATATAATTTGGTAGTTTGTATGTTGGTATGACGCAGTAAGTGTGAACTGCACCACTCCCTTTTTATGACTGTGTTTAAGGAGCTTCTAGGTGTGTTTCTGTACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017023 True 4486 mRNA 0.43 5 42553219 42561656

Neighbor

gene id symbol gene type direction distance location
AMCG00017028 usp19 coding upstream 1454 42515426 ~ 42551765 (+)
AMCG00017029 LOC106566459,LOC106572101 coding upstream 43591 42477751 ~ 42509628 (+)
AMCG00017027 NA coding upstream 93360 42428197 ~ 42459859 (+)
AMCG00017026 NA coding upstream 176284 42352071 ~ 42376935 (+)
AMCG00017032 NA coding upstream 242012 42310053 ~ 42311207 (+)
AMCG00017037 LOC106572099,LOC106566462 coding downstream 20696 42582352 ~ 42594094 (+)
AMCG00017035 klhdc8b,LOC106572099 coding downstream 62333 42623989 ~ 42630671 (+)
AMCG00017034 klhdc8b,LOC106572099,LOC106566462 coding downstream 88198 42649854 ~ 42664428 (+)
AMCG00017038 NA coding downstream 154293 42715949 ~ 42719266 (+)
AMCG00017039 NA coding downstream 160821 42722477 ~ 42725222 (+)
G17580 NA non-coding upstream 574553 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 810446 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 836230 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 863020 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 879866 41671378 ~ 41673353 (+)
G17882 NA non-coding downstream 491430 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 674164 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 832637 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 908414 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 938514 43500170 ~ 43500476 (+)
G17697 NA other upstream 155432 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 3298729 39239073 ~ 39254490 (+)
G17193 NA other upstream 4049587 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 7348987 35158597 ~ 35204232 (+)
G16550 NA other upstream 8452356 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 1564558 44126214 ~ 44137931 (+)
G18192 NA other downstream 2092996 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2387378 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 6810366 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 6840875 49402531 ~ 49403845 (+)

Expression


Co-expression Network