AMCG00017024 (pdhb,LOC107721006,LOC107745408,LOC107593072,LOC107658396,LOC107586915)


Basic Information

Item Value
gene id AMCG00017024
gene name pdhb,LOC107721006,LOC107745408,LOC107593072,LOC107658396,LOC107586915
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42268889 ~ 42275683 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017024
CCGCTTCCTTTTCCCAGAAGAGCACGCATGATTGGCTCTCCGGGGTTCGCAACTTCCCTTTGACGTGAGCACGGCTGGCTGTCATTGGGTCGCAGTACCGAGCTAGAACGCCACTCAAATTAGAGGACAGGTCCAACATGGCGTCGCTGAGGTGTATGCTGCGATCCGGGAGGAATGCCGTCGCTGCGGTGCTCAGACGGGAGTTTCACAAGACGTCCCCAGCCGCCTTGCAGGTGACTGTCCGAGATGCCCTGAATCAAGCGATGGATGAGGAGCTGGAGAGGGACGAGCGGGTGTTTCTCCTAGGGGAGGAGGTGGCACAGTACGACGGAGCTTACAAGGTCAGCAGAGGATTGTGGAAGAAATATGGGGATAAACGGATCATTGACACTCCTATCACAGAGATGGGTTTTGCTGGTATTGCAGTGGGTGCTGCTATGGCTGGATTGAGGCCCATTTGTGAGTTCATGACCTTCAACTTCTCAATGCAAGCCATTGACCAAGTTATAAACTCTGCTGCAAAAACCTACTACATGTCTGCGGGCCTGCAGTGTGTCCCCATTGTGTTCCGTGGCCCCAATGGCGCCTCTGCTGGCGTGGCAGCCCAGCACTCCCAGTGCTTTGCAGCTTGGTATGGTCACTGCCCTGGACTGAAGGTACTCAGCCCCTGGAGCGCTGAAGATGCCAAGGGCCTGCTCAAGGCGGCCATCCGAGACGATAACCCAGTGGTGTTCCTGGAGAATGAGCTGATGTATGGTGTGCCCTTCGAGATGTCTGAAGAAGCACAGTCCAAGGACTTTCTCATTCCCATCGGAAAGGCTAAAGTTGAAAGACAAGgaaaTCACATTTCCCTGGTTTCACACTCCCGGTACGTAAGCCATTGCTTGGATGCCGCTGCTGTTTTGGCAAAAGAAGGTATTGAGTGTGAGGTCATCAACCTTCGCAGCATCAGGCCTCTGGACGTCGAGACCATTGAGAGCAGCGTGATGAAGACCAACAACCTGGTGACAGTGGAGGGGGGCTGGCCACAGTTTGGAgtcCAGCCTTCAACTATTTGGATGCTCCAGCTATCCGAGTGACCGGCGTAGACATCCCCATGCCTTATGCCAAGATTTTGGAAGATAATAGCGTACCTCAGATAAAGGACATTATATTATCAGTGAAAAAGACATTGAATGTCTAAGTACAATGGTTAATGTTTGgtctatacatttattttacttcaccTGTTGACACTGAAACTTAGTAAGGTTTTGCTCTCtaagttatttttcagttgttcaTTCATTATATTTGACTTTCaagaaaagaataagaaaaaagtcTTGCAAAATGTCATTCTGAAAATGTCCTAATAAACCCTTTCATGGTGTATGCTTTGTATAGATCCAACCAATACTCTTATTCTGCTGTTACATGTTAGGTTTGGAACCCAAAtggttgttttaatattaagatCCACCATACctgtttatatttgtactatattgttttgttttgggttttccTTAATCTATTTAAACGCACAGGGTAAGGTGGTAAAAACTGATATTAATTATgagcaatgtgtgtgtgggggggggggggagaagtgtacaaacaaattaaacatgatcTAAGCCCCAGAGATGTTTTGACTGTGATTCTTAAACCTTTTAACTTTAGtcttcaaatgaaaatggccCAGTCatagagtttttgttttctgtatttactATAGGGCTCTGTTGTTAATAAAGCCAATAGTACTCCTGTACAGTTAATACAGCTCAGTGTTTCTGTACTGTTAATGAAGCCCATTGAGAGATCTCTTTGCTCTACAGTAATATTTATGCGTC

Function

symbol description
pdhb Enables pyruvate dehydrogenase activity. Acts upstream of or within pigmentation. Predicted to be part of mitochondrial pyruvate dehydrogenase complex. Is expressed in alar plate midbrain region; musculature system; optic tectum; optic vesicle; and pronephric duct. Human ortholog(s) of this gene implicated in pyruvate decarboxylase deficiency. Orthologous to human PDHB (pyruvate dehydrogenase E1 subunit beta).

NR:

description
PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial

GO:

id name namespace
GO:0006086 acetyl-CoA biosynthetic process from pyruvate biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity molecular_function

KEGG:

id description
K00162 PDHB, pdhB; pyruvate dehydrogenase E1 component beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017024 True 1838 mRNA 0.46 10 42268889 42275683

Neighbor

gene id symbol gene type direction distance location
AMCG00017025 NA coding upstream 1176 42246354 ~ 42267713 (+)
AMCG00017031 NA coding upstream 23860 42243601 ~ 42245029 (+)
AMCG00017020 NA coding upstream 29602 42222768 ~ 42239287 (+)
AMCG00017019 NA coding upstream 55506 42212609 ~ 42213383 (+)
AMCG00017021 flnb,LOC107712990,LOC107657976,LOC107680511 coding upstream 58582 42156679 ~ 42210307 (+)
AMCG00017033 kctd6b,kctd6,LOC107570288,LOC108436290,LOC107671957 coding downstream 14063 42289746 ~ 42290831 (+)
AMCG00017032 NA coding downstream 34370 42310053 ~ 42311207 (+)
AMCG00017026 NA coding downstream 76388 42352071 ~ 42376935 (+)
AMCG00017027 NA coding downstream 152514 42428197 ~ 42459859 (+)
AMCG00017029 LOC106566459,LOC106572101 coding downstream 202068 42477751 ~ 42509628 (+)
G17580 NA non-coding upstream 290223 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 526116 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 551900 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 578690 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 595536 41671378 ~ 41673353 (+)
G17882 NA non-coding downstream 777403 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 960137 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 1118610 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 1194387 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 1224487 43500170 ~ 43500476 (+)
AMCG00016979 NA other upstream 3014399 39239073 ~ 39254490 (+)
G17193 NA other upstream 3765257 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 7064657 35158597 ~ 35204232 (+)
G16550 NA other upstream 8168026 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 8169293 34093276 ~ 34099596 (+)
G17697 NA other downstream 115614 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 1850531 44126214 ~ 44137931 (+)
G18192 NA other downstream 2378969 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2673351 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 7096339 49372022 ~ 49382218 (+)

Expression


Co-expression Network