AMCG00017025


Basic Information

Item Value
gene id AMCG00017025
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42246354 ~ 42267713 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017025
CAGACGCTGTGTCGCTTGTGCTGTTGCGAAACCGTGTAAAGCCCTCCCTGCGGCTCCACACGCCCGGCCCGAGGAAACGAAACTACGGCGGGGCGAGCTGTTCCCGACGGACACTAGGACCGCGCAGGAGACGCGCCCCCTCGCACACTGACAAGCGGTGTCTGGACGGGGCTCCGCTCTTGTCAGTTGGTAAGCGCTCTTCCTGTATGAAAACCATCACTGAATAACTTCTCCTCGGCCGCCGCTGCTGTTCCTCCCGCCCCGTCCCTCCTCGGGCGCCTGGCATGGCGTTCATGGAGAAGCCGTCTGCGGGGAAGATCCTGCTGGACGATACTGTGCCGCTGACCGCCGTCATCGAGGCGAGCCAGACCCTGCAGTCCCACACGGAGTACATTATCCGTGTCCAGAGGGGCGTTTCCCAAGAAAACAGCTGGCAGGTCTCTGGCCTCAATCTGCCTCTTCCACCCAAGAAACTGATTGGGAACATGGACAGAGAGTTCATTGCAGAGAGGCAGAAGGGACTCCAGACCTACCTGAACTTCataacaacacagcacatcctGTCTAGCTGTGAGCTGGTCAAGAAGTTTCTGGACACCAACAATTACTCCGCTAGCTACACAGaAATAGCCTTACAGCAGGTTTCCATGTTCTTCAGGTCTGATCCGAAGTGGGAGGTTGTGGAACCATTGAAAGATATAGgttgGAGGATAAGGAAGaggtattttttaatcaaaaacaaGGATCAGCCCAAGGAACGACAGGTCTTAAGTTGGGCTGACCTAGGTCCTGACAAATTCCTGTCTGACAAAGACCTCCAGTCAGCAATGAAGCTTCTGCCCACTGTGTCAAATCCCTACATCTGCCCAGTTACCTTTGCTACAGCCAGTGAGTCCTCTGCACTGGTAATCCGGGTGTTCAGTGAGAAAGGCACGCTGAGGGATCACATCTGTAAGGCAAAACCGAAAGAGCCTTTCCTGAAGAAGTATTGTAATCCCAAGAAGATCCAGGGCCTAGAACTCCAGCAAATCCGCACATATGGAAGGCAGATATTGGAGGTCCTTAAATTTCTTCATGAAAAAGGATTCCCGTATGGTCACCTTCATGCCTCAAACGTCCTGTTAGATGGAGATACCTGCAAGCTGCTGGACATCGAGAACTCATTACTCGGTCTTCCCTGCTACTACAGGCCCCATATAACACAATTCAGGAAAATCAATacgaCAGAGAGCATTGACGTTTACTCCTTTGGACATTTACTGTATGAAATGACCTATGGACGCCCTCCAGATTCTTTCCCGGTTGACCACTTTCCTCCAGCTCCCTCCACCTCAGTAGTGTCTGTGTTGCAATCCATCCTCTCCACTGAAGCCTGTAAAGCTGGAATGCCAACCGTTGCCCAACTATTGCAGACTCCACTGTTCAGTGATGTCTTGCTGTTCAACTCGGAGAAACCCCAGTTCAAGATATCCACTAAATTAAAAGATGCCTTGAAAAATGCCAAAGAATGTCTGGAAAGACGACTGCAAGAGGAACAGAAAACGAAATCCAGACAGTCAGCATACGAAAATGAGGAGGATCTCTCTTCAAAGTGCAACAACTCCAATAATTCTGGCTCAGGAGCAAGCTCCCCTCCAACATCACCCTCTTCTCCTACTCCACCTCCCACTGCAGGAGTGCCACCAgcacccccacctcctcctccgcctgctcctccgcctcctccacTCCTGACTGAGCCACGCCCGTCCCAGTCCTCCCCGCTGCCTGTGAGTGATCCGGGCCGTGGAGCCTTACTCAGTTCCATTCAGAACTTCTCCAAAGGAAGGCTGAAGAAAGCCGAAACCAACGACTGCAGAACACCCCACGTGTGACAGCCACGCTTGCAGCTCACAGCTCGTGCTCCTTCTCAGCGTGCTGCTATCCTTTCCAGTGATTCTCCTTTGTGTCAaccagacactttttttttttccttcttcctttgTGTACCTTTTTCTGTccatggagagaaaaaaaactctaaTTCTGaagtgattgtttttgtttttgttttttttttgttacttgaATATCCTCACGCCAGCaccagtgtgtgagtgtggcaGTCAGGACTGGCCTGAGGTGAAATACATGTGCTAAGGGACATAAGCCCAATTACTGTACTTGCTTGGTTGTTCTTTGGggaatatattgtgtatttggcATGACTCACCTTCTGAGAGACTGCCTCAGACTTTAGCTTCTTCTGTTGAACCTCATCCATGGATATAGCTGGAATGTGTGTCTGCGGTCAAAATAACATTGAATTGTATCAGCCCTTGACCACTTTAGGCCCTGACTGCATTACCTAAGAAGTCACAGTCATCAGTGACCAAtgttgctaaaaaaaaatgacatttcctCCCCACACAGTCTTCACTCCCCCCTGccaaaactttaaaaaacatttccattgctTACGAAGCACTTTATTtactcccctccccccaaaatgtttctaaaatgaAGAACAACAAATACTGCAGATGTAATGGTTTGTCTGGGCTACcacaacacaaatgtgtttttttttctagtcGGGTATTGTGCCAGACTTTTGTTGTTGcctagagaaaaaaaactgttttacctGTAACCGGGATAAATACTGGCTCCCTTAAGAGAAATGTTAGAAAATGAGCTTAAGAGCCTGCTATATGTTGGCAGGCTATCAGGCCCATCATTATGATCCACTGATCTTAGTCTTAGTCTTATTCAACACCATTGAGTTTTGTTCCAGCCATCTTCAAAACCTCTGTCTTCACACCGCTAAAGGGTGTTTTTTTCAGACTGAGAACCAGCAAGGAAATACCTTATTTGTGAACATTGTAAAAATTCTATTTGATGCAGCACTTGTGCTTTACATATGGGATTTATTTTGATTctgaaattgcttttaaaaccaCCACAAAAACGAGCAGACACAAAAAAGGCCAAATAAGTGAATGTTCAGCCCTGCCTGTTTTCATCCTTTAGTCTTCAGCTGTATTTAGAGATGTTGCTGCGGCTGTATTAAATAACCATGTGATGGACTGTTTTTTTGTagcactttattattgttagaTTTAGTAATACCAAACAGGAATTGTAAAGGCAAACATGCTGAGAAGCTTACAGTGTGCCAAATTGCACCAGGAATCTCCCAGTGACTAGAGGGGTACCAGACTGACACTCGGGTCTTgcataagaaaaatatacagttgttTAATGCAGACACATACTATCGATTCCCAATAGATTTTTCTCAACCACAGTTTCAGAGAAGGGCTGGAGGTATATACTCACTTGTTTCTGCTTTTCAGAATTGGactgttttatcatttattGTAGCACagttgtattcatttattcaatGCTTGGGTATACTAGTTGTGCTCTTGAATTTAAGTGAGTGAGGGCAGTGGTACTGGGCAGATATTTGGCACATAAATTcatagtttgtttttccctccTTCTCTTGATGGTAAATTCAGACATTGGAGTGCTTTAGGTCTTGAGAGACTTCTCAGTTTCTCTCCTGTTATGCCAATGGTAAACATATACCGAAACATTCAGAGTAAGCCAATGTAGTTTTAAAGCCAgacacagatttaattaaagctGTGTCCACACAATTTGTTTTATCCACATTAGGTTCTGAAACGCTAAACCCTGGATGTTGCATTCTCTGACTGATCTTGGCTactcttctgtgtgtgtgtggtttttagCATGTTCTCCAGctgttttaatgttgtgtttctTGACTGCATTTCGCAAGAGTAAATATGAATACTTGAACACTGGTTTCCGAAGAGAGTTTGATTTGGCTCACAAACCGCAagaacattaatatattaaaaagcttCATGCAGTATGTGTATGTTTAGTGCCCTGCCTCACCATTGATGAAAAGGAATAAATTATGTTCTGGGGAGCTCATTTTTATAGGCTGTAATATAACCAGTAAGTGAGTAAGATTATAAGATGGAGAGCTAAGCATCAAAAAAGCTCAATGTTGCTTCAGTATGTCTGCTATACACATCATTGGCTTTGGTGTAGTGTGagaaacaattatacatttcttttattatttgcatatgaCTGCGCTGACAGCCATTGCTATTTTTGCACTTAAAAACATCACCCAGAAATTggtacagaaaacacaaaaacactgaatgtgaaacaaaatgtcttaCACACACAAAGCGCTGCCCGTTGCTGTTAACTACAAGAAAACAGATTTGCCAGCATCAGCAAAAgccttaaaataaacacaaaattagAACTGCACACATTAAAATTGATGTTCCAAACATGCTACCATATATTCTGTCACTTTTTAAATGGAACTTTTGACATGCTTTACTGTTTGGCAAACATGACAAGTAAATTTAACCTTCAGTAGATTTTCCTGCAGTCCAAATCCTGGCTCTTACTATTGTTTGAGCAATTGTCGGGACTGTTTGGAGATTTGTAGTCATTGTTTGCCTTTCAGTAAACTAAGTTAAGAGTAAACAAAATagtttctgaaaagaaaagtgatGTATtccttcttctcttttttctgtttgttacaagtgcttaaaattattttatctgtagTCAGAAGTGCAGAACCATTAGTACCTATAATTATACAGAGATTATCAGtgtgatgtgtgtatatatgtgtataaaaaaaaaaactttcatgtAACCTGTGATAAAATCTGTCagactattttattaaaataatggatGAACCTTCTGTGCATCTGCCTTGTTTTCTGTATCCAAGCCTGGAAAAGGACGACTGCTGGAACATTCAATACAGCAATCAGCGACTACATACTTGCTTTTTCcaatattaactgtatatttgtgGTAGTAAAGAACACAATCCAAAGCTTCATTGCATCCCTTCTAAGATTGTACCACTACATTGAATGCAGC

Function

GO: NA

KEGG:

id description
K17543 PXK; PX domain-containing protein kinase-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017025 True 4956 mRNA 0.43 16 42246354 42267713

Neighbor

gene id symbol gene type direction distance location
AMCG00017031 NA coding upstream 1325 42243601 ~ 42245029 (+)
AMCG00017020 NA coding upstream 7067 42222768 ~ 42239287 (+)
AMCG00017019 NA coding upstream 32971 42212609 ~ 42213383 (+)
AMCG00017021 flnb,LOC107712990,LOC107657976,LOC107680511 coding upstream 36047 42156679 ~ 42210307 (+)
AMCG00017022 flnb coding upstream 135658 42110029 ~ 42110696 (+)
AMCG00017024 pdhb,LOC107721006,LOC107745408,LOC107593072,LOC107658396,LOC107586915 coding downstream 1176 42268889 ~ 42275683 (+)
AMCG00017033 kctd6b,kctd6,LOC107570288,LOC108436290,LOC107671957 coding downstream 22033 42289746 ~ 42290831 (+)
AMCG00017032 NA coding downstream 42340 42310053 ~ 42311207 (+)
AMCG00017026 NA coding downstream 84358 42352071 ~ 42376935 (+)
AMCG00017027 NA coding downstream 160484 42428197 ~ 42459859 (+)
G17580 NA non-coding upstream 267688 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 503581 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 529365 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 556155 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 573001 41671378 ~ 41673353 (+)
G17882 NA non-coding downstream 785373 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 968107 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 1126580 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 1202357 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 1232457 43500170 ~ 43500476 (+)
AMCG00016979 NA other upstream 2991864 39239073 ~ 39254490 (+)
G17193 NA other upstream 3742722 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 7042122 35158597 ~ 35204232 (+)
G16550 NA other upstream 8145491 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 8146758 34093276 ~ 34099596 (+)
G17697 NA other downstream 123584 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 1858501 44126214 ~ 44137931 (+)
G18192 NA other downstream 2386939 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2681321 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 7104309 49372022 ~ 49382218 (+)

Expression


Co-expression Network