AMCG00017026


Basic Information

Item Value
gene id AMCG00017026
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42352071 ~ 42376935 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017026
CTTGGAGACCCTTGCTACCCAGCTGGATTCTGATTTCTGGACCTATGAATTCATAATGCCGACAGAGGTGCTTTATTTCCagctggcagacagacacaatcTAGAATACCTCATTCTGCAGAAACATGGCTAGCTACAGGGGTAATAATTTACCAAGGTATGGGGAAGTGAGAAAAAGCCTGTTGTGAGCCACAGCCTGTTGGAAAAGTTTCACTTATAGAAGACAAATGGTACTGGATTGACTGGCAAGTAAAACTTCACCTGCAGACACCTTTAGGAAAATATTTGGGAAAGGCCTGTTTTCACACAGACGGCTTAATGGCGCAGTACCTCCACAAACAGCAAGCAGTGGACCTCCCTCAAGAGGATGATTCTGTGTTCCAGACGCATGCCATCAAAGCAACCAGCCAGGATGGCAGGCTGGCTTTTCTCTGTGTGCTACCGATAAAGAATGCCAAGAGTGATGCCAACGAGGTGGTCATGGTGGAGCTCCCTGCCCATGCTAATGTGCACCAACTCAGACTCCAAATCTTCATGCAGGCACAGGAGAAAGGTCCTTACCAAGACCTCAGAGGAATTCTCGACCCAGAGTCCTACCAGCTCCTTTACAGGAAGGGTGAGGACCTGTATGAGATTTATGATGACTATCAGACCCTCAGGGCCTTAGATGTAGTGAGGCACTGGTGCTCACAAGGCATAAAGATGGATAAGATTTTTGTGAAGCCCACATCCAAAGGCACAGAGAAAAGCAAAAGTTTAGAAAAAGACCTAGCCTTCTTGATTGGACAGGACCTCAATGCCGCTGTTGTGGACCGCCTGGATGAGTTGAGCTTTGCCCGCAGGAAATTTGCCTCTCCTCGTAGGGCAGAAATCCGAAACCGTGACCCCAGTGACTATGCCACAGAACCTTGGATTGCTTCAGCTGCCCTTTCAAAAGACCAGCAAGTGACGCTCAACAATGGGCTTCCCATCACTCTTCATTACAAAGGGATTAGTTTCGCAGTCAGAGTAGATGCCAAGAAACCGCCATCTGCTGTAATTGAAATATTCCAGCAGATGATGTGTGATAAAGGTCTCTCTGTGGAGGACACAGCCTCTACCTTGACACTAAAAGTCTGTGGGAGAGAAGAATTCTTAACAGGAGACTGGCCACTGTTGGATTTTCTTTGGGTCCGCCAATGTcttaaaactaaacaagaaatcCATCTGTCTATCTTCTCTCTTTTGTCAATCACATCTGACGAGGTGAGAATGGAGGACTGGCCACTGGTTGATAGCTTCACTGGGCTTTCCAATACTCATGAGGAACTCATGCTAGCCAACAAAGATGTCAATGATATTGTAATGATTTCCCTCTGGGATTGCGATCGGAAATTCAGAGTTAAACTTCTTGGGTTTGACATTCCTCAGCTTCCCAGTAAATCTCCCCAGTACGTCTATGTAGAAGCTTCCATCCTCCATGGGAAGAATGTGATGTCCTCAGTCTGCTCTGAGACCAAAGCTTTTGCAGATGAGGTGCTGTGGAACGTATGGTTAGAGTTTGACATGCAGCTTAAAAGCCTGCCTAGAGCATCAAGATTGGGGTTAACGGTCAATGGTATAACTGCTGAAGCAAACACCATGAAGGATCCCAAACCGCACCCATATGGAGGGAAGATGGCGGACTGTCAAAGGGGCAAGGGCAAGGCATTATACTTTGCAAACCTCTTGCTAATTGACCATAGGTCTCTCCTCAGCCAAGGGCAACACACTCTCCACATGTGGCCCATCCCTGAACAAGTAGAGGAAATGTTCACCTACGAAGCCGATAAGCTGTCCTCCACGACAAACCCGGATTTACCTAACTCCATGGCTATCACTTTCATCTTGGACAGGTACAGTTTTCCTGTTGTCCTACCAGACAGCCGGGCCCGCCCTCCTGCTGCCTTGCTACCGGACTCTCTGTGTCTTAGCAGTGAAGATGTCTCTTCAGGATCTCCAGGGGTGTCAGACAAGGATGTCCTCAGGAGGGTTAAGGAAGAGAGTATGCAGTATGGTTCCAATTTGCCGCAATTCCTCAGCACTATTAACTGGTGTGATCCTGACACTGTACAGGATATCCACTGGCTTCTTCGCAGCTGGAACCCCCAGAACCTGGATATCTCCATTGCTCTGGAGCTGCTCAGTTTTAACTTTGCTGATGACGAAGTCAGAAGGTTGGCAATTAAGAGACTGGAAAAACTGTCAAATGATGAGCTTCTAAAGTACCTGCTTCAGCTGGTACAGagcAAACGAATTGGACACTTCTTCTTCTGGTATGTGCGCAGTGAAATCAGGGGCTCCCCGTATTTCCGGGACCGTTTTGCCGTAATTCTGGAGGCCTACCTGCTGGGCTGTGGCCAGTCCATGCTGGACAGCCTTCTCAAGCAGGTGCAGGTGGTGGACTGCTTGCACAGAGTGGCCACTGACATCAAGAAGATCTTTCCAGAGAAAAGTGATTTGCCCCCAAATGCTGCGTGCACACTACAAGAAATGCTGCAAAACTACTCTCTTCCGCAAGACTTCCAGGTCCCCTATGACCCTCGCATTGTAGCAGGAACGATAATTCTGGAGAACTGTAAGGTGATGGCCTCCAAGAAGAAGCCCCTATGGCTGGAGTTCAGTTGCTGTGTCTCCGAGGGCCCCCCTGGCCCACCAGTGGGCATCATCTTCAAACACGGAGATGACTTACGCCAGGACATGCTGGTCATTCAGAAATCCTTGGATCTGAACCTGGTCCCATATGGATGCATCTCCACTGGATACAATATAGGCATGATTGAGATTGTGAGGGATGCCACGACGATTGCAGCTGTTCAGAGGAGCAAAGGGGGGACAAATGGAGCATTCAAGAATGACGCCCTGCTCGAGTGGCTCAAAGGGAAGTGCAAACTGGAGGAAATGTACTATCAAGCCATGGAGAGATTTGTCACTTCCTGTGCAGGATACTGTGTGGCTACCTATGTACTGGGAATAGGAGATCGCCATAACGACAACATTATGATCACAGAGCAAGGGAACCTCTTTCACATTGATTTTGGCCACATCCTTGGGAACACGAAGCGATTTCTGGGAGTGAACAGGGAGCGAGTGCCCTTTGTCCTGACACCAGACTTCCTGTACATCATGGGCAGAGTCAACAAGAAGTCCAGCCTCTACTTCAAGAGGTTCAAGGAGACGTGTATCCAGGCCTACCTGGAACTGCGCTGTCACTCTGGCCTGCTGATCACCCTCTTCTCCCTCATGACACTCACGGGCATCCCTGAGCTCAGCTGCTCCGAGGACATCCTCTACCTGAAGGAGGCCCTGCAGGTGGAGCGGGACGAGGGCTCCGCTCGGGAGCACTTCCTCCAGCAGATCAACATCTGCGAGCAGCTGGGCTGGACGGTCCAGGCCAACTGGTGGATTCACCTGCTGGTCGGCATCAAACAGACCTGAGGGGCTGGAGTCTCTCCCTTAGGGCAAGCAGCAGCACCACGGGCTTGTATGTACCTTGTTCCTCAGCCAGGCAACACTGTCTGTAGTGTTTGTAGTGGGTCTGTGATGGGCAGCCCTTCCAAACCCTTGCACTGTTGGACAGGGCCAAAACCTTTCCTTTATAATAACCAGTCAGGTTATTGGCAGGGATTGGCATTGTGTCcgtgttaaaacaaaatcaggtccattactaatttattcaaaataacgTACGACTTACAGGCTGTtgagaaatatacattttacctATGAAACCTAATTTTGCAATTGCTACGTTAGCTACGTTCACATTgtgaacgtttttttttttattattagttagcgctgctgcctcatgGGTCCTGGGTTTGATTCAAAGCTGgggggtctgtctgtgtgtagttTGCACATTTTCCCCATCTCTGCAtgcctttaaattaaatacacacttCGTGTACAGGCTAATTTTCCCCCAAGCcatgtgtaattaatttaaaactaattattaattaaactttaattgcatgtttttttatattatttgtttatgcaaGTTGGTACATTTATATGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017026 True 4047 mRNA 0.48 11 42352071 42376935

Neighbor

gene id symbol gene type direction distance location
AMCG00017032 NA coding upstream 40864 42310053 ~ 42311207 (+)
AMCG00017033 kctd6b,kctd6,LOC107570288,LOC108436290,LOC107671957 coding upstream 61240 42289746 ~ 42290831 (+)
AMCG00017024 pdhb,LOC107721006,LOC107745408,LOC107593072,LOC107658396,LOC107586915 coding upstream 76388 42268889 ~ 42275683 (+)
AMCG00017025 NA coding upstream 84358 42246354 ~ 42267713 (+)
AMCG00017031 NA coding upstream 107042 42243601 ~ 42245029 (+)
AMCG00017027 NA coding downstream 51262 42428197 ~ 42459859 (+)
AMCG00017029 LOC106566459,LOC106572101 coding downstream 100816 42477751 ~ 42509628 (+)
AMCG00017028 usp19 coding downstream 138491 42515426 ~ 42551765 (+)
AMCG00017023 NA coding downstream 176284 42553219 ~ 42561656 (+)
AMCG00017037 LOC106572099,LOC106566462 coding downstream 205417 42582352 ~ 42594094 (+)
G17580 NA non-coding upstream 373405 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 609298 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 635082 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 661872 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 678718 41671378 ~ 41673353 (+)
G17882 NA non-coding downstream 676151 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 858885 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 1017358 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 1093135 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 1123235 43500170 ~ 43500476 (+)
AMCG00016979 NA other upstream 3097581 39239073 ~ 39254490 (+)
G17193 NA other upstream 3848439 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 7147839 35158597 ~ 35204232 (+)
G16550 NA other upstream 8251208 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 8252475 34093276 ~ 34099596 (+)
G17697 NA other downstream 14362 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 1749279 44126214 ~ 44137931 (+)
G18192 NA other downstream 2277717 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2572099 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 6995087 49372022 ~ 49382218 (+)

Expression


Co-expression Network