AMCG00017027


Basic Information

Item Value
gene id AMCG00017027
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42428197 ~ 42459859 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017027
ACTGGGAATAACTCCCTCCTCCCCCAATTATTCTCTGCAGCTCTCAGTGTAGTGGCACAGGAGCAGCCATCCGGACCTCACGGATGTACAGAGGGAAGCTGTTACCCAGCAACTGGCAACCTCCTAATTGGCCGAGCTAAAGACCTGACCGCTACCTCCACCTGTGGCCTGCAGATCCCAGAGAACTTCTGCATCGTCAGCCACCTGCAGGAATTGGACAAGTGTTTCCAGTGTGACTCGCGGAGGCCATACGATCCCATCTGGGAGAAGAACAGCCATCGTGTGGAGAATGTCATCTACCTAATGGACCAGAATGGAGAGTACACCTGGTGGCAGTCCGCCAATGGTGAAGAGAATGTCAGCATCCGTCTGAACCTGGAGGCGGAGTTTCACTTCACTCACCTCATCATGAAGTTTAAGACCTTCCGTCCGGCAGCCATGCTGATCGAGAGGTCCGCGGATTTTGGGCGCACGTGGAAACCCTACCGCTACTTCTCCTACAACTGCACCAAAATGTTCCCCGGTGTGCCAGCCCGGGCCTTGCAAAGGATTGACGACATCATCTGTGAGGAGCGGTACTCTGACATTGAGCCCTCCACCAAGGGCGAGgtcatttttaaagtgcttGACCCAGCTATTTTTGTCAGTGACCCTTACAGCCTGGAAATACaagAGCTTCTTCGCATCACCAATCTCCGAATCAACTTCACCAAGCTACACACACTGGGGGACAACCTGCTGGACCGACGGACCGAGGTGCTGGAGAAGTACTACTACTCTCTGTTCGAGCTGGTGGTGCGGGGCAGCTGCTTCTGCTACGGCCACGCTTCGGAGTGCGCGCCTATCCCAGGGATCAGCCGCTCGGAGCCGGGCATGATCCATGGCAGGTGTGTTTGCAAGCACAACACAGAGGGCTTGAACTGCGAGAGCTGTAAAGACTTTTTCAATGACCTTCCCTGGAGGCCGGCCGAGGCGGACAACCCACATACCTGTAAAGGTAATGGCCAATGTGAAATCACCAGTGAGGAATGCAGATGCAATGGCCATTCCAGTAGGTGTCACTTCGACATGGCAGTGTACCTGGCCACGGGGAATGCAAGTGGGGGCGTTTGTGACGACTGTCTGCACAACACCATGGGCCGAAACTGCGAGCTGTGCAAACCCTTCTACTACCAGGATCCAGTGCGTGACATCAGAGACCCGGCTGCCTGCGTTCCATGTGACTGTGACCCAGTGGGCTCTCTGGATGGCGGAGTGTGTGACAGCCACACAGACCTGGACATGGGCATGATAGCTGGGCAGTGCCACTGCAAGCAGAATGTCAAGGGTACCCGCTGTGACTGCTGCAAGGAGAGCTTCTATGGGCTCAGCAAGAATGACCCCCTGGGCTGCCAGCCATGCAGCTGTGATCCTCGTGGGATTATCATGGCAGCAGCACCATGTGACCAAATCAGCGGGGACTGCTCTTGTAAGAGATACGTCACTGGCCGCTACTGCAACCAATGCCTGCCAGAGTACTGGGGGCTCAGTAATGACATTGCAGGCTGCAGGCCCTGTGACTGTGATTTTGGTGGAGCTTATAGTAACAGGTGTGTCATGGAGAACGGGCAATGTGACTGTCGGCCGCACATCATTGGGCGGCAGTGTGCAGAAGTGCAGCCTGGGTACTTCTGTGCCCCTCTGGATTTCTACACATATGAAGGGGAGGATGCCGTGCCACATTCGCCTGAAGACCCTGACCTTCCTGGAAGGCCCCGACCCAAGGCTGAGGTCGACTGTGTGGAGCACCTAAACAACCAGCTGAGGAGGCACCGCCGCCACCGTCGGATTGCCAGCGCCCAGCAGCAGAGGGCAGCACTGAGGAGGATCCGCCAGCTACAGCAGACGCCTGATGTGAAGACCGTGCACAGGGAGAGGGCTCCCGGGCAGATGGTGACGTGGACAGGCCCCGGCTTTGCAAGGGTGAAGGACGGAGCAGGCCTGGTGTTCACCGTTGGCAACATCCCATTCGCAATGGACTATGACATCATGATCCGATACGAGCCAGAGTCAACAGAAGACTGGGAAGCCATTGTTAGCATTACGTCTCTGGTATTGCCCACAAGTCCCCGCTGTGGGAACGTGCTGCCCTCTGAGCAGATGTACACAGTGACGCTCCCTCACCAAACAAGGTACATAAAGATGCCCAGGCCATTCTGCTTTGAACCCAACAACCGTTATGTTGTAGCTATCCGCTTCCAGCGCTATGGAGTCTCTCACCGACACCTGACTGCATTCATACTAATCGATTCTCTGGTGCTGATTCCACAGTATACAGAGCTGCCCGGTTTCCTCGGCAATGACCCCGTGTCGGTGCACCACCGCAAGGAGATGGAGCACTACATGTGTTTGGACTCCTTCATGATGGTGCCCATGCCCATGTTGGCGGAGATGTGCGTCAAACTCATCTGCAGCATATCTGCTATCATGCACGACGGCGCACTGCCCTGTCAGTGTGACCCCCAGGGCTCTCTCAGCACGGTGTGTGACAAGGTGGGGGGTTACTGCCAATGTAAGTCCAACGTGGTTGGCCAGCACTGTGACCACTGTGCTCCTGGAACATATGGCTTTGGACCTTACGGCTGCAGTGCCTGTGACTGTCACTCTCAGGGCTCAGTCAGTAACCTGTGTGACCCTGTCTCGGGCCAGTGCCAGTGTCAGCATGGGGCCACCGGTCGCCAGTGTGCCAATTGCCAGCCAGGGCAGTGGGGCTTTCCCAGCTGCCGGCCATGCCAGTGTAACGGGCACTCAGAGACCTGTGACCCCCAGACAGGAGCCTGTGACAGCTGTAGGGACTACACGGCCGGGGCACTCTGTGAGAGGTGCATGAATGGTTTCTATGGAAACCCTGTTTTGGGGTCCGGAGAACACTGTCGCCCTTGCCCTTGCCCTGGAAACCCAGGAAGTGATCACTCCAATGGGGACTCCTGTTACTCTGATCCTGTGTCCAATCAGATCATCTGCCACTGCAGAACAGGATATACAGGCCCTCGCTGTGACCACTGCGCCCCTGGTTATTTCGGTGACCCAGTGCGAGCTGGTGGAGAGTGCAGGCCTTGCCAGTGCAACAACAACATTGATACCCTGGACCCTGGGTCATGTGACCCACAGACCGGCCAGTGTCTGAACTGTCTCTACAACACTGATGGGCCGACGTGTGCGGAGTGTAAGCCTGGATACTATGGCAACGCCCTCGTTCAGGACTGCAGGCGGTGCACCTGTGTGACTGCGGGCACCCTGTCATCTCTCTGCACCGCAGAGGTGTGTCACTGTGACAAGAACACAGGAGCCTGCCCGTGCCGTGCCCACGTCATCGGGCAGAACTGTGACCGGTGTGCACCTCTGCACTGGAACTTCGGCCGGGAGCCAGGCTGTGAGCCATGCAGCTGCCACCCCCAACACGGCATTGGTGAAGACTGCAACATGATTTCTGGACAGTGTCGCTGCCGGCCAGGCTTTGGGGGCAGAGTGTGCTCAGAGTGCCAGGAGACCTACTGGGGTGACCCAAGCACAGAATGTAAAGAGTGTAACTGTGACCCGTTCGGCTCAGAAACGCCCCAGTGTGACCGGGAGACTGGGCACTGTGTGTGTAAGGAGGGAGCGATGGGCCAGCAGTGCAATCAGTGTGCCCGGGGCTTCTCTGGGAACTTCCCTAAGTGTGTGCCCTGCCACCCCTGCTTCGACCAGTGGGATGATGTAGTGTGCCGCCTGCGACGAGAGCTGGACACGGTCCAGATGCAGGTGAAGAAGATCCAGATGGCAGGGCTCCCCTCTGACTTTAACGACACGCGCATCCAGGACCTGGAGAAAAAGCTGGCTGACATTCAGAGCCTCATCAACGGCAGTTCCAGCCTGAGGATCTTCTCACTGCTGAGCCAGAACGCCGATGACCTGAGGACGGAGATCACTTTGACAGACGGGAGGCTGATGGAGTTAGAGGGCGACCTGAACAGCACGATGCGGAGAGATGGGAAGCTGCAGGACAACCTGGACATACTGGAGGCGGAGCTCCGGGACCTCAACAACACTGTGGCTGAGCGTCGCCGTCAACTAGGAAACATCATCAGCGCAGGCCTCAGCGATGCATATAACAATATCACTAAGTCCTACATGGAGTTCCTGGATGCAGACAGGAGATGCAATGCCTCGGTGTCCGGTGCTAACAGTCCAGTGGTGCAGTCCAAGGAAACTGTGCAAAAGACAGAGGACCTTCTGAAGGATAGGGAGGACAAGTTCCAACGCACCATGGCAGCTCAGAAGAAATCACTGAAAGAGCTGCAGAACAAATCCAGAGATATGGACAAGAAGATCCACCACCTGAGCCAGAAGGAGGGCAACTGCGCAGACAGTCCATGTGGGGGAGCTGGTTGCCGTGATGAGCAGGGGCAGCTGCAGTGTGGGGGGGCGGGCTGTAACGGGACAGTTGGGACCTCCATGAGAGCTCTGCAGCTGGCCAATGATGTTGCTGCCAACATTTCAGCTGCCAATGAGGAGCTGCAGAACGTCGCACAGAAGCTAAAGGACATTAAGATGCTGACGCAGGATGTGAAAAGCCAGGCACAGGGGGCTTTGAAGAAAGCTCTGAAGAATAAAGAGGTTTTTGCAAACACCAATCAGCAGCTCAAAGACTTCATCCAGAAGATCAGAGACTTCTTAATGGAGGATGGCGCTGATGCCGAGAGCATCGAGAAGGTGGCCCAGCAGGTGCTGGCTATCTCCCTGCCCGTCAATGGTAGCATGTTGGCCCGCCTGGTGCAGGAGATCCAGGACAGCATCGCCGACCTCACCAATGTGGAGAGCGTCTTCAACAGCACCTCCCAGCAGCTCCGCATCGCTGAAGAGCTCCTGAAGGATGCTGTCAGCGCCAAGGCCCGAGCAGAAGCAGTGAAGGACACTGTAGATGAGACGAAGACCGCTCTTAATAACGCCCAGCAGGCGGCAGACACTGCAGAGAAAGCCCTGAAGAAGGCCCAGAAGAACATCAACGGCGTGGGCGACACCACTGCCATGGTGGAGGAAAAGCTGCAACTCATCGAGGACAAACAGATGGATGCCATGATGCGACTGGCCAACCTGTCGGCAGAGGTGGAGTCTGTGCGGCGGAAGACGGAGCTGAACAGGGTCATGGCACAGGAAGCCAAGGCTCAGTCGGAGAACGCCACCCGCGCGGCACGAGGCCTGGACCAGGTCTGCCGCTGCTCCTGGTCAGTGTGTCGATATCTCGAAAAGCGGTTTGTGAACAATGAGAAGCGAATGCAGGAGCAGAGGGACGAGCTGGCGGACCTGGAAAAGAATGTCACTGACATCAGAGAAATTATACGTAACAATGTGACACAGTACAACACCTGCACGTGATAAGTTGCTCCTCAATTCTCACACTTTATTAGACCCCAAGCACtgactgttttttaaaatagatGCTCCTGTTTCCAAAGCTGTAACTGATCAGGTTTTAGAGGAGTTTTtcctcttgtttttgtgttgttgttgctgcttttttgggtgtgtgtggggtgggggggcattttcTAGAAGTCTGCGGAGATCctttcagtatttattaaacCATTCAAGATTGCACATCTTGAGCCTAGATGAAACCTTTATGCctataaataaagtgaacagcCCACTCCTGCTCTCCAGAAGCCATTCAAATCAATAAGGAATTGTagcttctgctctctgtccccAGAAATCTGTAGATTGGATTCATATTGTGGGCTTTGCAAGATCAATGTTTTCTCCTTTGTCCTATAATGGCATATTTTTATACAGAGCTAATTATTACTTGTGTATCTCACTTATATAAAAAAGGCACAACTTGTAATTAGGGGTCCAAAAGTATACAAACTGTTTTCTTCCCTTCAAAACATATTGTTGATTATTGAATTCTGCTGACTAGCGTGTTCTATTAAGTAATATCAAAGATGAGGATGGAAAATTATAGGTAATAGGGGCTTGTGTGAAGTTAATGGTCAAATCAATCTAGTTGTACTTCAATAAATGTTCAAAATAGAACAATGCCAAGTGTTGCTATGGCGTAccatagttatttttaaaagatccCTTGATACTTCtatgaaaaatagaaaataagttTGTATGTTATTGGTTTCACATTAATACATAAGAAGAAATAAGTgtttaaacatataaaacaaatagtctaAATTATCcagtttaatcaaattaatccaGGTATTTGTAACTTGATTATTTTTCAGTAGTAGTAAGCCTGTTCTCAGAccagatgtatatatttttaaaatattgtcagACAGGATTGTGAGACTCAGCTATTACAATCTGCAACTAATAGTGGTTCCTATTTTTATTGAGGGCCTTTCTGCAATAACTGACTTTCATAATTGCTTCTGCTCATTCCAACAACAGGCAAAGAAAAGGCTTGGCTTATTTAACATGTAATACATGTTTCTATGTGGGTATCTGGTCTCTCAATAAATCCTGCTCAACATGATGGACTGCCCTGGCGACTGTGAAGTCCGTGTCGTCATTTTGTTCACAAGGAAGCTCAACTGTAATAATATCAGGAAGTTCTGCAGGGCTGATTAACATACCCAAGTATATCTGAACCCTCATACCTATTTGATTAACGTTTGCcttatgaaaaatgtaagcCGCGCTAGCCACATATGTTAAATCGCAGTACTGTAATTCAATTAACCAATATTACAAGCCTTAATAGAGTATTATGATATCCTTATGGTGCTAAATGAACCATGCAGTACCTGGTCcatgcagtttaaaaatgttttttccactCTCATACAAACCATGTGCTGTTAGGCTGAAGATAATGCTAGTGTTCTGGTACTGGGATAGAGAGTCAGTTCACACTCAGAGATTCGGGACACCTAACTCCTATGGAGCAAAACAACGGACAAGTTAAGCTTATATTTTGGAGAATGGGTCATAATAGGAAGGTCAGATACTTAAATTTTCTCCTGATAAACATGGGATCAGACTGTGTAAGCCTTGTGGCAGATAAACCGGACAGGACTTTAGTTTGCATTGTTATCCAAAGAACCCCTCACTGAAGAGCTCTTGTTAAGAGATGTGAAAGGACATAGGCTGAGACAGACTCGGAGACAGGAAGGCTCTGTattaagataaaatataaataccaacacaaaacaatcttGCTTTTTAATCTTGTTATATGTATCCATTGCATAAACACATTGTATCTCTATTTGTCTGTTATTTACAGATACACCTGTGgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017027 True 7287 mRNA 0.51 33 42428197 42459859

Neighbor

gene id symbol gene type direction distance location
AMCG00017026 NA coding upstream 51262 42352071 ~ 42376935 (+)
AMCG00017032 NA coding upstream 116990 42310053 ~ 42311207 (+)
AMCG00017033 kctd6b,kctd6,LOC107570288,LOC108436290,LOC107671957 coding upstream 137366 42289746 ~ 42290831 (+)
AMCG00017024 pdhb,LOC107721006,LOC107745408,LOC107593072,LOC107658396,LOC107586915 coding upstream 152514 42268889 ~ 42275683 (+)
AMCG00017025 NA coding upstream 160484 42246354 ~ 42267713 (+)
AMCG00017029 LOC106566459,LOC106572101 coding downstream 17892 42477751 ~ 42509628 (+)
AMCG00017028 usp19 coding downstream 55567 42515426 ~ 42551765 (+)
AMCG00017023 NA coding downstream 93360 42553219 ~ 42561656 (+)
AMCG00017037 LOC106572099,LOC106566462 coding downstream 122493 42582352 ~ 42594094 (+)
AMCG00017035 klhdc8b,LOC106572099 coding downstream 164130 42623989 ~ 42630671 (+)
G17580 NA non-coding upstream 449531 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 685424 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 711208 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 737998 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 754844 41671378 ~ 41673353 (+)
G17882 NA non-coding downstream 593227 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 775961 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 934434 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 1010211 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 1040311 43500170 ~ 43500476 (+)
G17697 NA other upstream 30410 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 3173707 39239073 ~ 39254490 (+)
G17193 NA other upstream 3924565 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 7223965 35158597 ~ 35204232 (+)
G16550 NA other upstream 8327334 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 1666355 44126214 ~ 44137931 (+)
G18192 NA other downstream 2194793 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2489175 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 6912163 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 6942672 49402531 ~ 49403845 (+)

Expression


Co-expression Network