AMCG00017028 (usp19)


Basic Information

Item Value
gene id AMCG00017028
gene name usp19
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42515426 ~ 42551765 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017028
ATGAAAGAAGAAGAGTTGGAGGACAGGGACTTTATCCGCGATAAACACCTTCCAAAACCGGAGACTTCACCGGAGTGTCATCTGGAGGTTGTACGTGATGGGCCCAGGCTAGAAGTTTCTAGACATACCGTCGCCAAAATAGCCGGGCCAGGTAGAAAGCGCCACACCCCTGAGCCAGAACCCAGCAGCGAAGCCGGTGGGCAATACGTGAGTGCCAAGTGGCTCAAGATGGCCAGCACCGGCGAGGCCACCGGCCGCCGCAGACCAACCCGTGGGATAGAGGACAGCACCAGCAGGAAGAAGCAGAAAGACAAGGCCAACCAAGAAAGCAAGGAAGCCAAGCGGTCAGGTAGCACAGAAACCAAGAAAGACCTATCACAGTCTCTGGAGTCACACGATGATACAGAATTTGATGATGGGCGTCAGTGGAGCTGTGTCCTGCACACCGAGATTGAGAGCTCctgcagtaaagtgcagtacaAGGAGAAGGGCAACTTCCTGCAGCTGGTCATGCAGAAGAAGATCCCTTTCAACATCTGGCCGTCTCTGATGcgAAACAAGAAGGAAAAGGATCCCATTAACATTCAGACAGAGAATGGGAAAGAGCAGGCTGGGAAGTTGGAGAAACTGGAGGAAGAAGGGGTGAAGGCACCCGTAGAGTCAACTGAGCAGAAACGGGCAAAACCAGATCGGGGGATAAAACGTGCAATAAAGCCCAAACCAGCTGGAAAGACTGAGCGGGGCACAAAGGGTACAGAGACTTCAAAGCACAATTGGAAGGCAGAGTTACCAACTGAACCCAGTGCAAAACGTGTGATCCGCACTACGTCTAAAGCTGCTAAAGACACGGGGCATGGTACAGGGAGGGTCTCCCCCGCAAAAGGCATGGGAAGCACCAAAGTAGAGACTGGCCAGGATACAGTAGGTCCGCTCAGCTGCAACGGCAGGAGTACAGACCAGAAGAGTGTCCGAGGCTCTCCAGCGCCTGCGCCCCAGGCAGAGGTGGTAGAAGAAGGTAGAGGCCAGTCTTTGGTCACTGAAACCAGTGCAGGTGTTCAGACCCCCCCCCAGGACATGACTCCCCCCACAGAACCCTCCAGGAATGGCGAACCTCAGGAGTTGCACAGCACAGAAGGGACTGTCGAGCCCATAgttgagaaagagagacaatGCCAGGGAGAACTGGACTCTCAGGTCGAGAAAAACGTTCCTGAATTAGAGGTGGCTGGGTCTGGCCATTTTGGTACTGGGGAGCCTGCCTCACCAGCCCTCTCTAAAGAGGCCTCTCCTTGTGCAAAGGGTATGGAGGAAAAGAGTGATGAGACAAAAGAGGAGAGCTTGGAAATGCAGCCAGAAGTCTTGGAGCCCATGGTGAACTTGAAGTTTGTGAAGAACGACTCTTATGAGAAAGGGAACGACTTCATGGTGGTCAATGTGTACATGAAAGGGATCTGCAGGGAGAGCTCAAAGGTGCTGTTCAGGGAACAAGACTTCACACTCATCTTCCAGACCAGTGATGCAAATTTTCTGCAACTACAGTCGGGCTGTGGACCAAACACTGTCTTTAAATGGCAGGTCAAACTCAGGAACCTTATCCACCCTGACCAGAGCACCTATGCCTTCACCCCATCCCGGATCGACATCACTCTGAAGAAGAGGCACAGTCAGCGCTGGGGGGGCCTCGAGGCTCCAGCAACACAAGGTGCAGTGGGTGGCGCCAAGGTTGCTGTGCCCTCTGGGCTTGCTTCTCTAGATAAGAGCCAGCCTGGGAGTAGCCAGCATACCCTGCCCAACAAAGAGGAACCCAGGACgacagagaaggagaaggcACGCGGAGACGACGGTGGCCTGGACACGGTGGCAGCCAGAACAGTGTCTGAGCACATGCCTATTAAGCAAGAGCCCCTTGTCACCTCACCCAAGCCCACATGCATGGTGCCCCCGATGACCCATGCTTCTGCAGGCAGTGAGCACCccgatgaggaggaggagaagaaggtgTGTTTACCTGGCTTCACTGGCCTAGTCAACCTGGGCAACACCTGCTTCATGAACAGTGTCATCCAGTCTCTGTCCAACACCCGGGAGTTGAGGGACTACTTCCACGATCGAGGCTTTGAGTCTGAGATCAACTGCAATAACCCCCTGGGCACTGGCGGGCGCCTTGCCATTGGCTTTGCCGTATTGCTACGGGCACTGTGGAAAGGCACTCACCATGCCTTCCAGCCCTCCAAACTCAAGGCGATTGTGGCGAGCAAGGCCAGCCAATTCACAGGCTATGCGCAGCACGATGCCCAGGAGTTCATGGCTTTCTTATTGGACGGGCTTCACGAGGACCTGAACAGGATCCAGAACAAACCCTACACAGAGACTGTAGACTCGGATGGCAGGCAGGATGAGGTGGTGGCAGAGGAGGCCTGGCAGAGGCACAAGATGCGGAACGATTCCTTTGTTGTGGACCTGTTCCAGGGACAGTACAAATCCAAGCTGGTGTCTATAACATTTGACCCATTCCTGTACCTGCCAGTCCCATTGCCTCAGAAACAGAAGGTCCtaactgtgttttattttgctaagGAACCCCATAAGAAGCCAATCAAGTTCCTGGTGAGCGTCAGCAAGGAAAACTCCAGCACGACTGAAGTCTTGGAGTCCATTTCTAGGAGTGTACGAGTCAAACCGGAGAATCTGCGTCTCACTGAGGTCATTAAAAGTCGTTTTCACCGAATCTTCATGTCCTCGAGCTCGCTGGATGCCGTTTCACCCTCAAACACTCTCTTCTGTTTTGAAGTGCTGTCTAAGGAGCTTGCCAAGGAGAAAGTACTGGTGCTGCAGGTCCAACAGAGACCCCAGGTTCCCAGTGTGCCCATCGCTAAGTGTGCTGCCTGCCAGAAAGCACCTCAGTCAGAGGATGAGAAGGTGAAACGCTGCACTCGCTGCTACCGTGTGGGCTACTGCAACCCaACTTGTCAGAAGAATCATTGGGCTGATCACAAACATCTGTGCCGGCCGAACACGGAGAACATTGGCTACCCCTTCCTGATCAGCGTTACGGAGTCCCGGCTCACATACAGCCGGCTCTCACAGCTGCTGGAGGGCTACTCGAGCGATGACTCTGGCTTCTCCGAGCACAAGGCTGAGTCCCACGGTCCCTCAAGTGAGAAGGAGACATTCTGCGAGAAGGTGGTGAAGCCTGAAGCTGTAGTTACAGGCTATCAGCAGCCTAGTGAGTCCCAGGCCCGCTCTGCCTCACAGTTTTACATTGCTGTGCTCGACTCTGAAAACAAAGAGCAGAAGCTAGAGGACAAAGATGATGCGGTGCTGCAGATCGCTGAGGACTCCTCCATCATCCTGGTTTGGAAGAACAACGAGCGGCAGAAGGAGTACGTCCTGATCAAGTCCAAGGAGCTGGAGTCTGTGGAGGACCCAGGGTCAGTCAGCGAGGCTGCCAGGGCTGGGCACTTCACCCTAGAGCAGTGCCTCAACCTCTTCACCAAGCCAGAGGTGCTAGCCCCCGAGGAGGCCTGGTACTGTCCGAAGTGCAAGCAGCACAGGGAGGCATCCAAACAGCTGATGCTGTGGCGGCTGCCCAACGTGCTGATCATCCAGCTCAAGCGCTTCTCCTTTCGCAGCTTCATCTGGAGGGACAAGATCAATGATATGGTGGACTTCCCTGTCAGAAACCTGGACCTTAGTAAGTTCTGCATCGGGCAGAAGGATGACAGCCAGCCTCCCATCTATGATTTGTACGCTGTGATTAATCATTATGGGGGTATGATTGGAGGACATTACACTGCGTATGCCAGACTGCCCAATGACAAGAACAGCCAGCGCAGTGACGTCGGCTGGCGCCTGTTTGATGACAGCACAGTCACCACCGTGGAGGAGAGCCAGGTGGTGACACGCTATGCCTACGTCCTGTTCTACCGCCGCCAAAACTCCCCCGTAGAGAGACCCTCGCGAATGCCCAGCCCCCATGGCGCAGAGTCCCCGGCAGCTGCAGGAGCCACAGCCAGCCAGaccTCTAGCCAGGCACTGTTTGGGACAGATCTGGACCCTGAAGGACCCCCACAGCTGACCCCAGAAGTTAACTCTGATCTGTTCCCTCACTCTGGAGACTGCGACACCCCATCGTACAGCAACATGGAAGAAGTGGATTAAATTGGGCAGCCCCTCACTGGACACGAACTGTGGAGAGCCAACCACGATACTaggagatttttttaaagaattttaaGATGACTTACTGATTTAAGTGAGTTGACGGGACACGGTTTGCTGTCTGCCGATCATAGCATAAGGTGATGATGGGCATTTAGGTGCAcacttgacacacacacatctttcatTTTGTCAGCAGTGCCATCAGTCCGTTACACTGGtgagaagatgatgatgatgatgatgattaaaataCCCCCCTGATGGTGCTGCAGTCCTGCACTGGGCACCAAGTAGATCTGGATGAAGTATGGTTGCCTGTCTGGCCCCTCTGCATTGATGGACTCTCCAGGTGCATTGGATTCTCACTCCATCCCCTTCCTTCCCCACAGAGTAGGGTACTGCCGGTTCCCCCTCACcagttaaaaacacacacacgtgggGAGCTGCCTCTGTGCTGAAATGTCTGTCTTTTTAAGGGCTTCCCTTGCAGTGTCGACAGAGGGCATAGGCAGAATTGTCATATTGGATCCATATTGGCTCATTCAGTTGAGTTGAGGATGCTGAATGGTACAGCTGCAATTCTCAAAGCAAGGGTGACTGATGGATGCTGTATTTCGCAGTAGGAACCACAAAGACCTTTTCTGAAGTTGGATTTCTTTATGgttttttttttgtaatttacccCACACACGgtaaatttgtttatttttcttcaaccTGAGAAACTGATGTTCACTTCATATACAGTTGGGTCAGCCCTGTGTATACTCTTTTGCAGAACCTGATCTTAAACTCTTATCACTTAATCATCTGCATGGTAACACTGTAGCCCAAGTGtggaaaaagttaaaaaaaaaaaaaaaattgcttttataTTCTTTTCTTTACCTAGttaaggtttgttttgtttttctttcatttgtggGTGGAATGtctaagtattttatttcattcttgttttttgtattgccactgcatatatgtgtgtgtgtgtgggggacaTGGTTATATGGATGCTGCTGTGAATAAAGTATAAAtggttaatataaataaatccttttttgagaaactgaaaaaagttgTTTGTATACACAACAAAACTCTGATTCAGTTGtaactttaaataaagtttCCTGGA

Function

symbol description
usp19 Predicted to enable metal ion binding activity and thiol-dependent deubiquitinase. Acts upstream of or within central nervous system morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human USP19 (ubiquitin specific peptidase 19).

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 isoform X6

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K11847 USP19; ubiquitin carboxyl-terminal hydrolase 19

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017028 True 5302 mRNA 0.51 27 42515426 42551765

Neighbor

gene id symbol gene type direction distance location
AMCG00017029 LOC106566459,LOC106572101 coding upstream 5798 42477751 ~ 42509628 (+)
AMCG00017027 NA coding upstream 55567 42428197 ~ 42459859 (+)
AMCG00017026 NA coding upstream 138491 42352071 ~ 42376935 (+)
AMCG00017032 NA coding upstream 204219 42310053 ~ 42311207 (+)
AMCG00017033 kctd6b,kctd6,LOC107570288,LOC108436290,LOC107671957 coding upstream 224595 42289746 ~ 42290831 (+)
AMCG00017023 NA coding downstream 1454 42553219 ~ 42561656 (+)
AMCG00017037 LOC106572099,LOC106566462 coding downstream 30587 42582352 ~ 42594094 (+)
AMCG00017035 klhdc8b,LOC106572099 coding downstream 72224 42623989 ~ 42630671 (+)
AMCG00017034 klhdc8b,LOC106572099,LOC106566462 coding downstream 98089 42649854 ~ 42664428 (+)
AMCG00017038 NA coding downstream 164184 42715949 ~ 42719266 (+)
G17580 NA non-coding upstream 536760 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 772653 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 798437 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 825227 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 842073 41671378 ~ 41673353 (+)
G17882 NA non-coding downstream 501321 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 684055 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 842528 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 918305 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 948405 43500170 ~ 43500476 (+)
G17697 NA other upstream 117639 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 3260936 39239073 ~ 39254490 (+)
G17193 NA other upstream 4011794 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 7311194 35158597 ~ 35204232 (+)
G16550 NA other upstream 8414563 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 1574449 44126214 ~ 44137931 (+)
G18192 NA other downstream 2102887 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2397269 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 6820257 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 6850766 49402531 ~ 49403845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022303 usp19 coding NC_007134.7 CM002907.2 20145300 ~ 20177527 (-)
grasscarp (Ctenopharyngodon idella) CI01000001_06146900_06161111 USP19 coding CI01000001 null 6146563 ~ 6161111 (-)