AMCG00017029 (LOC106566459,LOC106572101)


Basic Information

Item Value
gene id AMCG00017029
gene name LOC106566459,LOC106572101
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42477751 ~ 42509628 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017029
CTGGCAGGCTGTCTTGCCCAGGACCCAGACCAGGCTCACGGCTGCACCCACGGCAGCTGCTATCCAGCCACAGGGGACCTGCTAGTGGGCCGAGAGAAGAACCTGAAGGCCTCATCGACCTGCGGCCTGCGCAGGAAAGAGCCCTACTGCATCGAAGAGAAGAAGTGTTTCCAGTGTGACTCTCGGCGTCCCTACGACACGGTCTACAACACCATCAGCCACCGCATCGAAAACGTCATCACCACCTTCAAGCCACACCGCAAGAAATCCTGGTGGCAGTCAGAGAACGGGAAGCCGGATGTCAGTATCCAGGTGAACCTGGAGGCAGAATTCCACTTCACTCACCTCATCATGACCTTTAAGACGTTCCGGCCGGCCGCCATGCTGATTGAGCGCTCCGCGGACTTTGGCCGTTCCTGGCAGGTGTACCGCTATTTTGCCTACGACTGTGCCAGCAGCTTCCCTGGTGTCTCCCAGGGTCCCCTACGCAAGGTGGATGACGTCATATGCGAGTCACGCTACTCCGACATAGAGCCCTCTACTGAGGGAGAGGTGATTTACAGAGTATTAGACCCAGCCATCCAGATTGAAGACCCATACAGCCCCAACATTCAGAACCAGCTGAAGATCACCAACCTGCGCGTCAACTTTACCAAGCTGCACACGCTGGGCGACAACCTGCTGGACTCACGTGTGGAGATCAAGGAGAAATATTACTACGCCATGTACGAGCTTGTGGTCCGCGGCAACTGCTTCTGTTACGGCCACGCCTCTGAGTGCGCCCCGATATCCGGCATCAGGGACGACATCGAAGGCATGGTGCACGGCAGGTGTGTCTGCAACCACAACACGAAGGGTCTGAACTGTGAGCAGTGTGAGGATTTCTACAACGATCAGCCCTGGAGGCCAGCCGAGGGCAGGAACACCAATGCCTGCAAAAAATGCAACTGCAACAGTCACTCCAGCCTGTGCCACTTCGACATGGCGGTGTACCTGGCCATGGGCAACGTGAGTGGGGGTGTCTGTGATGACTGTCTCCACAACACCATGGGCCGCAACTGTGAGATGTGTAAACCCTTCTACTACCAGGACCCCGCAAGGGATATCCGAGACCCAGGCGTTTGTGTGGCCTGTGACTGCGACCCCGACGGCTCTCTGAATGGGGGGATCTGCGACGGGCATGACGACCCAACCCTGGGCATGATTGCCGGCCAGTGCCGCTGCAAAGACCACGTGGAGGGGCCTCGCTGTGACAAGTGCAAGTCTGGCTTCTTCGGCCTGAGCGCAGACAACACCCAGGGCTGCCAGCCCTGCCAGTGTGACCCCCAAGGCACCGTGTCCGAGAGCCCCCAGTGTGACCCCATCAGCGGAGACTGTTTCTGCAAGCGCCTGGTCACCGGCCGCAGATGTAATCAATGCCTGCCGGAGCACTGGGCGCTCAGTCACGATCTCCATGGTTGCCGGGCGTGTGACTGCGACGTGGGCGGGGCAACCGACAACCACTGCTCCATGGAGACAGGCCAGTGTCGCTGTCGCAGTCACATGATGGGGCGGCAGTGCCATCAGGTGGAGTCAGGGTACTACTTCATGGCTCTGGACCACTACACCTATGAGGCTGAGCTGTCACGCCTGGGCCAGggCTGCTCCGTGGTGGACAGGGAGCCCCAGCCCGGCCGCCCCCCCACCTGGACCGGCACAGGTTTCGCCCGTGTTCCCGAGGGTGGCACCCTGGAGTTCCACATCAGCAACATCCCCTTCTCCATGGAGTATGATGTCCTGATCCGCTACGAGCCCCAGCTGCCGGCGGAGTGGGAGGAGGTGCGAGTGACAGTGGTGCGGCCCGGCCCCATCCCCACCAGCAGCCCCTGTGGGAACACCATCCCCGCGGACGACCTGCTGTCTGTGTCCTTGCCACCCGGCGCAAGGTACGTGGTGCTGCCCCAGCCTGTATGCCTGGAGAGACGGGTGAGCTACACCCTGCGCCTGGAGTTCAGCCACTACCGCTCCCGAGAGAAAGTCCCCAACGCCAATGTCCTTGTGGACTCGATCGTCCTCCTGCCTCGTTACTCCTCTCTAGAGATCTTCATTTCCGGTGACCCCGTGTCCATCAGCCGCAAGGAGAGCTTCGAGCGCTACCGCTGCCACGACAACAGCAAAGCCGTAGTCAAGCCTCAGCCCAATGACGTCTGTGCCAAACTCCTCGCCAGCATGTCCGCCATCATCCATGACGGAGCGCTGCCCTGCCAGTGTGACCCTCAGGGCTCAGTCAGTTCAGAGTGTGACTCCAGGGGAGGGCAGTGCCGCTGCAAGCCCAACGTGATTGGCCGTCGCTGTGACCAGTGTGCTCCAGGGACCTATGGATTCGGCACAGCAGGCTGCAAAACATGTGAGTGCAGTGCAGACGGCTCACGTAGTCGGCTGTGTGAGCAGTACAGTGGTCAGTGCCTCTGCCGCCCAGGAGCCTTCGGCCTGCGCTGCGACCGCTGCCAGCCCGGATATTGGGGCTTCCCCAACTGCCGGCAGTGCCAGTGCAACGGCCACAGCGAGGACTGCGACCAGAGGAGCGGCAGCTGCCTGGCTTGCCGAGACAACACCGCGGGGGACAAGTGTGACAGATGTGCCAACGGTTACTATGGCAACCCTGTTTTGGGAACAGGGGAGCAGTGTCGGCCATGCCCCTGTCCCGACGGCCCTGCCAGCGGACGACACTTTGCCACTTCCTGTTACCAGGACAACCGCAACCGGCAGGTGGTCTGCAACTGCAACCAGGGATACACAGGGTCCCATTGCGATGAGTGTGCCCCTGGTTTCTATGGTAACCCCACACAGCCTGGAGGCCGGTGCCAGCCCTGCCAGTGCAGCAACAACATTGACATCACTGACCCCGAGTCCTGCAACCGCCGCACTGGGGAGTGTAGGAAGTGCCTCTACAACACAGAGGGCCGCAACTGCGCTGTCTGCAGGGCCGGATACTATGGAGATGCAACACGCCGCAACTGCCGGAAGTGTACCTGCAATTTCCTGGGCACAGAGCGCAGTCAGTGCTCCTCGCGGGAGGAGTGTGCGTGTGACCGGAGCTCGGGGCAGTGCCAGTGTCTGCCTAATGTCGTCGGCCAAACCTGCGACCACTGTGCCATCAACTTCTGGAACCTGGGTAGCGGGAGGGGCTGCTCGGCCTGCAACTGTGACCCCAACAACGCCATCACCCCCACCTGCAACGAGTTCACTGGCCAGTGTCAGTGTCGCAGTGGCTTTGGAGGAAAGACCTGTCAGGACTGCCAGGAGAACTACTGGGGAGACCCCAACATACAGTGTAGAGCCTGTGACTGTGACCCCCGTGGCATCGAGACATCGCAGTGCAACCGGGTGACAGGGCACTGTGTGTGCCAGCAGGGTGTGTCGGGGGTGCGCTGTGACCAGTGTGCCCGCGGCTTCTCAGGTGAGTTCCCCGACTGCCAGCCTTGCCACCAGTGCTTCGGTGACTGGGACCGTGTCGTACAGGACCTGGCCACCCGCACGCGAGCCCTCACCAAGCGCGCACGCGAGATCCAGCACACCGGGCTGACGGGTGTCTACAAGAAGAATTTTGAAGAGCTGGAGAAGAAGCTGGCGCAGGCACAAGTGATCGTCAATGCCCGCAATGCCACCGCAGAGGCCATCACCAATCTCATGGCTCTCATCAAGGACCTCAGGACCAGGATTGGTGACACCACTGACACCCTGAACCGACTGGAGGGGGATCTGACCAGTGTGCAGGACAGCAACTTCAAGGCTAGCAATGAGCTGAGCACCCTGGAGAGGGAGGTGCGGGAGCTCAATCTTTCTTCAGGAGAGCTGGGCCGCCAACTGGATGTGCTGAAGAACTCCAACTTCCTGGGTGCCTACGACAGCATCCGCAGCTCCTACAATAAATCCCGAAATGCTGAACATCGCGCCAACCAATCCACCACTGCTGTGCCCAGCACTGTGCGACAGTCGGCAGATACCCGCCAGAAGACAGAGCGCCTGATGGCTGAGAAGAAGGATGACTTCAACCGCAAAAACGCTGCTAATAAGCGTGCCTTGATGGACCTGAGTGCCAAGGCCAACACTCTGGACATGAAGAAGATCAACGAGAAGGTGTGTGGGGCCCCTGGTGATGCCCCCTGTGGAGAGAGCCCATGCGGAGGAGCAGGTTGCCGTGATGATGAAGGGAACAAGCACTGCGGAGGTCTAAACTGCAATGGTGCCGTGGCAACTGCCGACAACGCTCTAGAGAGGGCCAAGCATGCTGAGAAGGAGCTGAGCAAGGCCATGGGTGAGGTGGAGGAACTCTTCCAGAAGGTGGCAGAAGCCAAGATGAAAGCGGACGAGGCGAAGGTGCGTGCGCAGGTGGCCCTGGACAAGGCTAATGACACCAAAACTAAGGTGGAGCGCTCCAACAAGGACCTGCGCGACCTCATCAAACAGATTAGAGACTTCCTCATGCAGGAAGGGGCCGACCCGGACAGTATTGAGATGGTGGCCAGCAGGGTTCTGGAGCTTTCCATCCCCGCCTCCCCCCACCAGATCCGTCACCTTGCCGAGGAGATCAAGGACCGGGTGAATAGCTTGTCAAATGTGGATGCCATTCTGGAGCAGACCAACGACGACGTGCGCAAGGCCGAGCAGCTCCTGCAGGAGGCCAAGAAGGCCAGGAATCGAGCAGAAAGTGTGAAGAACACAGCGGAGACAGTGAAGCGTGCCCTGGACGATGCCCGCCGGGCACAGGTGGCTGCTGAGAAGGCAATACAGCGTGCCAAGGAAGACATTGGCCAGACGGAGAACCGCCTGACTCAGATCCAGTCTGAGACAGATACCAGTGAAAAGAGCTTGAATGATGCCATGGACCGGTTGGGCACCCTGGGCAGGCAGATCGATGCCCTGAAGATTAAGCGTGCCAACAACAGTGTGGTGGCATCCAGGGCTGAGGAAAAGGCAACCATGGCACGCGATAAGGCCAACGAAGCCAAGCAGATTTTAGACAGCGAGCTGACTGACAAATACAAGAGCGTACAGGACCTGGTGGACATAAAGGCCAAGAAGGTGCAGGAGGCAAAGAAGAAGGCAGAGAGGCTGCGGGACAAGGCCAAGCAGCTGCTGACTGACGCCCAGAGCAAACTGCGCAAGCTGGGCGATCTGGAGAAAGATTACGAGAACAATCAGAGAACACTGGAGAGCAAAGCCAAGCAGCTGGATGGGCTGGAGGACAAGATGAGGTCTATCCTTGATGCCATCAACCAACAAATCCAGATCTACAACACCTGCCAGTAATAGGCGGGCACTTCCACTGCACCTAATGCGCCAACCAAAGAGGACTGCAATCACTGAGTGAAACGAACACTGCTGTACCTGTAAATGGCGCCCTCTAGTGGTACCCAGCTTAACCTTCATATGGAATAACTGCGGATGCTTATAGCACTAATATAGGAGACACCTTTCATTAATTCTGACATTTCAGGTATACTTTCATGAAGTCATTAGtaatgctgtacattttcataatgaaatatgaaactGGGCATTACAGGCACTGAATCATTCACACATTTACCTATCAACAGTTCCAGGATACAATGAAAATCTCCCCCCTGACTACTAGATACATGATTTTGCATACATTCAGCTTATGAGACAATTCTagctgagattttttttttttttaagatttcataCAGTCaggctttttaaattgttcaatcATAATACATAGAAGAGCCTCTAATATAATCCATAACTGAATGGgttctttgttattttataagTTAGTATAGGGTtgatatttattcataataagttgaatatctatatatatcccTAATATTTCACATGTGGCATTATAAAGTCAAATAAGCAATTGGTCCTTGCTTCAATGGATCCCTAAATGCCTTGAGAgctatatcaaatatatatctttattctAATTAATGAGAATTTCTAAAgattcattttcctttctaaaCGTGGAGCAAATGCTGGGTTTATGCCAGTAAAGAAACCAGTTATTTTGTGGTTTGTAgatccgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagttgTCTGATATTCCCTCCATTTGGTATATTTTCAGGATCTTTACAAAACCTCTTTCCTTTAAGGACTTTCAAccatagaaaaaaataacaaacaaaaaaacaacagagctGCCTTTTAAGTTATGGAAGCCTAATATTCTGTCACTGTGCCCTGTGCTATTTACCATGTAAAGTATATGGATGTCCAACTGGTCTGCAATAATGTCTGAACATATTGaagaatttaaatgtgtgtttctgttttacatcccccctacacacacacacatacatacaaggAACATGCCCAGGTGTTTTCTTCTAAAAGACTTGCATGTAAAGTGCTATGGgtataagaaaaacaaagtccaAAGATTCCCTGGTTAATTTGAGATCAGAAACAAGGCTGGTCATCAGAGCCACAGGCCTCTCAATGCTTTATGAAAGATCATTGGATGGAACtgtaagctttttaaaattattttgtatcaccTTTTATTCTGTTGCTCATTGTCTCTTGGTTTGAGAGAAAGATAATGGTTTTCCAGTTTGAATCTGGTTTCACCTTCCTCATCAGAAAATAGTTTAGCACTCGTTTTCTCCCTTTATAGAGAAAGAGTGGAATATGTATGTTAGTTTTGACAGGAATATTGGACTTACCTGTGTGAATCGCATATTGTATGATGTATTCACCCTCATTGGGTGACGTGTCCTGGCTACAGTCAATTACATGAGCCTGCTTCGTTTACCTTCTCCCTTACAGCCTGACCGAAGAGACTACATTTTTTACTTCGTGTCATTActgctctcatttgtaaactgctCTTCTGAAGCGTGGCCTCTATAAGGGCGAGAATGAAAACCTGTGCTTGCAGTCCTCAGTGTAATATGGACTCCGCATTCGTTCACTGTGACCTCATTGACAAACACATGCCGATGGGAGGCTCCACCTGTTCAGTGAAATAAACAGTTGTACATTTGCATGGTGCTGTGTTTCATGCCTTCGAGTGTCAGCAAAGCAGAGGTGCCCCCTGCCCTGATCTAGAAATATCAACTGCGTAAGGGAATGAGGTCTGAGATGCCTCAGATGAGAAAGGATCAGCTTTTAATCACAGAGATTGCTTTGTTGTTACATCCAGTTGGGAAACAAAGCACTTGGGGCTACAGAAAAGGTGATATGAgatattgaattattaatattttttaatttgttgtaagAAGATAATGGCTATCCTTTGCATCTGTAGATACTGACACCAGTATTGAATCCAACTTCACCTAGACTACATGCAGGAGTGCACAAGCA

Function

NR:

description
PREDICTED: laminin subunit beta-2-like

GO: NA

KEGG:

id description
K06243 LAMB2; laminin, beta 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017029 True 7359 mRNA 0.53 32 42477751 42509628

Neighbor

gene id symbol gene type direction distance location
AMCG00017027 NA coding upstream 17892 42428197 ~ 42459859 (+)
AMCG00017026 NA coding upstream 100816 42352071 ~ 42376935 (+)
AMCG00017032 NA coding upstream 166544 42310053 ~ 42311207 (+)
AMCG00017033 kctd6b,kctd6,LOC107570288,LOC108436290,LOC107671957 coding upstream 186920 42289746 ~ 42290831 (+)
AMCG00017024 pdhb,LOC107721006,LOC107745408,LOC107593072,LOC107658396,LOC107586915 coding upstream 202068 42268889 ~ 42275683 (+)
AMCG00017028 usp19 coding downstream 5798 42515426 ~ 42551765 (+)
AMCG00017023 NA coding downstream 43591 42553219 ~ 42561656 (+)
AMCG00017037 LOC106572099,LOC106566462 coding downstream 72724 42582352 ~ 42594094 (+)
AMCG00017035 klhdc8b,LOC106572099 coding downstream 114361 42623989 ~ 42630671 (+)
AMCG00017034 klhdc8b,LOC106572099,LOC106566462 coding downstream 140226 42649854 ~ 42664428 (+)
G17580 NA non-coding upstream 499085 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 734978 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 760762 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 787552 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 804398 41671378 ~ 41673353 (+)
G17882 NA non-coding downstream 543458 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 726192 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 884665 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 960442 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 990542 43500170 ~ 43500476 (+)
G17697 NA other upstream 79964 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 3223261 39239073 ~ 39254490 (+)
G17193 NA other upstream 3974119 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 7273519 35158597 ~ 35204232 (+)
G16550 NA other upstream 8376888 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 1616586 44126214 ~ 44137931 (+)
G18192 NA other downstream 2145024 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2439406 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 6862394 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 6892903 49402531 ~ 49403845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_06167374_06195286 LAMB2 coding CI01000001 null 6166681 ~ 6196226 (-)